The temperate-tropical gradient of planktonic Protozoa and Rotifera

Many flagellates, ciliates and rhizopods appear to be cosmopolitan, at least when considered at the morphospecies level. There are indications of tropical endemics among the ciliates and the rhizopods, but the percentage of endemics appears to be low. Among the rotifers there is a well marked latitudinal gradient, but the picture is complicated by the occurrence of warm water species during hot summers in temperate regions. A further complication has been introduced by the artificial development of heated water associated with power stations. The characteristic rotifer associations of the tropics are governed largely by temperature and salinity. A study of the altitudinal distribution of rotifers in Africa reveals an interplay between latitude and altitude in determining the similarities of the associations to those found in the temperate Old World.     

Sulfate inhibition of molybdate assimilation by planktonic algae and bacteria: some implications for the aquatic nitrogen cycle

Molybdenum is required for both dinitrogen fixation and nitrate assimilation. In oxic waters the primary form of molybdenum is the molybdate anion. Using radioactive [⁹⁹Mol Na₂MoO₄, we have shown that the transport of molybdate by a natural assemblage of freshwater phytoplankton is light-dependent and follows typical saturation kinetics. The molybdate anion is strikingly similar to sulfate and we present data to show that sulfate is a competitive inhibitor of molybdate assimilation by planktonic algae and bacteria. The ability of freshwater phytoplankton to transport molybdate is inhibited at sulfate concentrations as low as 5% of those in seawater and at sulfate: molybdate ratios as low as 50 to 100 times lower than those found in seawater, Similarly, the growth of both a freshwater bacterium and a saltwater diatom was inhibited at sulfate: molybdate ratios lower than those in seawater.The ratio of sulfate to molybdate is 10 to 100 times greater in seawater than in fresh water. This unfavorable sulfate: molybdate ratio may make molybdate less biologically available in the sea. The sulfate: molybdate ratio may explain, in part, the low rates of nitrogen fixation in N-limited salt waters.     

九龙江西溪漳州段浮游植物组成与环境因子的关系

分别在2010年的丰、平、枯3个时期,从浮游植物种类组成、生物量(叶绿素a含量)及其粒级结构等指标对九龙江漳州段浮游植物组成进行了调查,同时分析了其与环境因子间的关系,评估了该河段的水质质量。结果表明:研究区域微微型浮游植物占总生物量比例与温度存在显著的正相关性(P<0.05),小型浮游植物占总生物量比例与总氮成显著的负相关(P<0.05)。共鉴定出浮游植物7门59种,且在各时期均有差异;丰水期与枯水期相比,蓝藻比例上升(P<0.05),甲藻比例下降(P<0.05);研究水域Shannon-Wiener指数在1.0～3.0,为中度污染。典型对应分析表明,温度和营养盐是影响九龙江西溪漳州段浮游植物群落变化的主要环境因子。     

Nutrient concentrations and planktonic diatom-flagellate relations in the Oosterschelde (SW Netherlands) during and after the construction of a storm-surge barrier

Nutrients The inflow of Rhine water into the Oosterschelde was strongly reduced from 1987 onwards. This caused the winter concentrations of silicate and nitrate to decrease in the Eastern compartment, while those in the deeper Western compartment, more dependent on North Sea concentrations, hardly changed. The result was a levelling of the former East-West gradients for these nutrients. In East, summer concentrations of nitrate reached limiting levels in the post-barrier period and molar nitrate/ammonium ratios became < 1, indicating that any release of nitrogen must be important to stimulate phytoplankton growth in this area. Silicate summer concentrations in East, on the other hand, were higher in the new situation. In West, differences in summer nutrient concentrations between the old and new situation were smaller than in East, due to the still continuing exchange with the North Sea. Phytoplankton diatoms and flagellates In East during summer, N-depletion and longer residence times caused the phytoplankton to become strongly dependent on nutrient regeneration processes and increased zooplankton grazing. Average diatom biomass declined, but flagellate biomass rose during summer. Spring conditions for phytoplankton development in this area improved due to the increased water transparency, nutrients being present in excess, and this resulted in a higher new production of diatoms than before.In West, summer biomass of diatoms decreased, probably due to increased consumption by mussels under conditions of longer residence times; nutrients were not limiting, due to important benthic mineralization processes and exchange with the North Sea. The previously existing West-East biomass gradients disappeared, or sometimes reversed.Experimental (mesocosm studies) as well as field data, reported in the literature, give evidence for the given explanations.     

Reanalysis of Models and an Improved Model of Biomass Size Spectra

Our reanalysis aimed at understanding the regularity in empirical biomass size spectra (BSS) suggests that the construction of BSS depends of the size interval and size scales used and different definitions of BSS in literature are therefore very different. Existing empirical models of BSS can be fitted perfectly to the observed data, but the biological basis of the fitted parameters is not explained and comparison and interpretation of the findings is therefore difficult. Parameters of mechanistic models of BSS have a biological background and are interpretable. Discrete mechanistic models based on Lindeman's trophic chain theory assume a constant ratio of size (or body mass) in two adjacent trophic levels. However, this biomass ratio is not comparable with that in two adjacent (logarithmic) size intervals in the measured biomass size spectra. The continuous model by Thiebaux and Dickie (1992) is based on the discrete model by Boudreau et al. (1991). We show how the validity of the transformation of a discrete form into a continous form depends on the size ranges of prey and predator population. The model by Platt and Denman (1977) does not represent a continuous formulation due to the use of normalized biomass defined in logarithmic size intervals. We suggest to eliminate the use of trophic levels and normalized biomass. On the basis of the reanalysis we formulate and improved continuous model based on the model by Silvert and Platt (1978). The model is based on Eulerian strategy which appears more adequate for the problem than the previously used Lagrangian strategy. The model appears to be able to demonstrate the regularity in observed BSS.     

A computer-aided measuring system for the characterization of yeast populations combining 2D-image analysis, electronic particle counter, and flow cytometry

An integrated measuring system was developed that directly compares the shape of size distributions of Saccharomyces cerevisiae populations obtained from either microscopic measurements, electronic particle counter, or flow cytometer. Because of its asymmetric mode of growth, a yeast population consists of two different subpopulations, parents and daughters. Although electronic particle counter and flow cytometer represent fast methods to assess the growth state of the population as a whole, the determination of important cell cycle parameters like the fraction of daughters or budded cells requires microscopic observation. We therefore adapted a semiautomatic and interactive 2D-image processing program for rapid and accurate determination of volume distributions of the different sub-populations. The program combines the capacity of image processing and volume calculation by contour-rotation, with the potential of visual evaluation of the cells. High-contrast images from electron micrographs are well suited for image analysis, but the necessary air drying caused the cells to shrink to 35% of their hydrated volume. As an alternative, hydrated cells overstained with the fluorochrome calcofluor and visualized by fluorescence light microscopy were used. Cell volumes calculated from length, and diameter measurements with the assumption of an ellipsoid cell shape were underestimated as compared to volumes derived from 2D-image analysis and contour rotation, because of a deviating cell shape, especially in the older parent cells with more than one bud scar. The bimodal volume distribution obtained from microscopic measurements was identical to the protein distribution measured with the flow cytometer using cells stained with dansylchloride, but differed significantly from the size distribution measured with the electronic particle counter. Compared with the flow cytometer, 2-D image analysis can thus provide accurate distributions with important additional information on, for instance, the distributions of subpopulations like parents, daughters, or budded cells.     

森林林下植被生物量收获的样方选择和模型

在控制误差内寻求样方的最小面积和最少样方数量是植被生态学野外研究的重要问题。在综合考虑取样的边界效应和时间、劳力消耗的基础上,研究了在控制误差内测定森林林下植被生物量时应选择的最佳样方大小和数量,并找出最佳的自变量拟合了估算林下植被生物量的预测方程。结果表明,利用Wiegert的方法测定研究区林下植被生物量取样方案,得出0．25m。的小样方为最佳取样面积。但小样方受边界效应的影响很大,会产生过高的生物量估计。通过分析了边界效应的影响和生物量相对平均值的变化,得出2m×1m是本研究的最佳样方面积,而10个2m×1m的样方能把标准误差控制在生物量平均值的10％以内。灌木生物量回归方程所选取的3个自变量D^2H、CH和P日中,CH与灌木生物量的相关性和以CH为自变量的线性回归方程的拟合度较其他2个变量好。而以PH为自变量的灌木生物量预测方程在实际操作中能提高研究的简便性和效率。以PH为自变量的林下草本层单位面积生物量的预测方程分别为Wv=11．65＋4．25（PH）和wD=24．23＋6．85（PH）。     

New lipid formulation of amphotericin B: spectral and microscopic analysis

UV-visible and dichroic spectrum analysis and electron microscopy have been used to characterize a new amphotericin B (AmB) lipid formulation prepared by a solvent displacement process. The composition was dimyristoylphosphatidylcholine (DMPC) and dimyristoylphosphatidylglycerol (DMPG) in molar ratio DMPC/DMPG/AmB 7:3:5, a similar composition to that of Abelcet®. Although the latter has a “ribbon-like” structure, our process gave a thin disc-like structure. Analysis of circular dichroism (CD) and UV-visible spectra of formulations containing different percentages of AmB revealed that a minimum of AmB self-association was observed with 7:3:5 molar ratio. Varying the lipid ratio (DMPC/DMPG) while maintaining the fixed ratio of AmB yielded similar results when DMPC was in excess (DMPC/DMPG from 10:0 to 6:4). However, when the ratio was between 5:5 to 3:7, AmB self-aggregation increased. For compositions rich in DMPG (2:8 and 0:10), inversion of the CD spectrum was observed. The influence of the lipid composition on the morphology of the complex was also evident in electron microscopy. DMPC/DMPG/AmB (10:0:5) gave large unfracturable lamellae. The presence of DMPG shortened the lamellae, which often appeared as disc-like structures. AmB content, the presence of DMPG and the preparation process all contribute to generating these original structures with particular CD spectra.     

Complementary impact of copepods and cladocerans on phytoplankton

The differences in the impact of two major groups of herbivorous zooplankton (Cladocera and Copepoda) on summer phytoplankton in a mesotrophic lake were studied. Field experiments were performed in which phytoplankton were exposed to different densities of two major types of herbivorous zooplankton, cladocerans and copepods. Contrary to expectation, neither of the two zooplankton groups significantly reduced phytoplankton biomass. However, there were strong and contrasting impacts on phytoplankton size structure and on individual taxa. Cladocerans suppressed small phytoplankton, while copepods suppressed large phytoplankton. The unaffected size classes compensated for the loss of those affected by enhanced growth. After contamination of the copepod mesocosms with the cladoceran Daphnia , the combined impact of both zooplankton groups caused a decline in total phytoplankton biomass.     

Warming alters the size spectrum and shifts the distribution of biomass in freshwater ecosystems

Organism size is one of the key determinants of community structure, and its relationship with abundance can describe how biomass is partitioned among the biota within an ecosystem. An outdoor freshwater mesocosm experiment was used to determine how warming of～4 °C would affect the size, biomass and taxonomic structure of planktonic communities. Warming increased the steepness of the community size spectrum by increasing the prevalence of small organisms, primarily within the phytoplankton assemblage and it also reduced the mean and maximum size of phytoplankton by approximately one order of magnitude. The observed shifts in phytoplankton size structure were reflected in changes in phytoplankton community composition, though zooplankton taxonomic composition was unaffected by warming. Furthermore, warming reduced community biomass and total phytoplankton biomass, although zooplankton biomass was unaffected. This resulted in an increase in the zooplankton to phytoplankton biomass ratio in the warmed mesocosms, which could be explained by faster turnover within the phytoplankton assemblages. Overall, warming shifted the distribution of phytoplankton size towards smaller individuals with rapid turnover and low standing biomass, resulting in a reorganization of the biomass structure of the food webs. These results indicate future environmental warming may have profound effects on the structure and functioning of aquatic communities and ecosystems.     

Inhibition analysis of inhibitors derived from lignocellulose pretreatment on the metabolic activity of Zymomonas mobilis biofilm and planktonic cells and the proteomic responses

Lignocellulose pretreatment produces various toxic inhibitors that affect microbial growth, metabolism, and fermentation. Zymomonas mobilis is an ethanologenic microbe that has been demonstrated to have potential to be used in lignocellulose biorefineries for bioethanol production. Z. mobilis biofilm has previously exhibited high potential to enhance ethanol production by presenting a higher viable cell number and higher metabolic activity than planktonic cells or free cells when exposed to lignocellulosic hydrolysate containing toxic inhibitors. However, there has not yet been a systematic study on the tolerance level of Z. mobilis biofilm compared to planktonic cells against model toxic inhibitors derived from lignocellulosic material. We took the first insight into the concentration of toxic compound (formic acid, acetic acid, furfural, and 5‐HMF) required to reduce the metabolic activity of Z. mobilis biofilm and planktonic cells by 25% (IC₂₅), 50% (IC₅₀), 75% (IC₇₅), and 100% (IC₁₀₀). Z. mobilis strains ZM4 and TISTR 551 biofilm were two‐ to three fold more resistant to model toxic inhibitors than planktonic cells. Synergetic effects were found in the presence of formic acid, acetic acid, furfural, and 5‐HMF. The IC₂₅ of Z. mobilis ZM4 biofilm and TISTR 551 biofilm were 57 mm formic acid, 155 mm acetic acid, 37.5 mm furfural and 6.4 mm 5‐HMF, and 225 mm formic acid, 291 mm acetic acid, 51 mm furfural and 41 mm 5‐HMF, respectively. There was no significant difference found between proteomic analysis of the stress response to toxic inhibitors of Z. mobilis biofilm and planktonic cells on ZM4. However, TISTR 551 biofilms exhibited two proteins (molecular chaperone DnaK and 50S ribosomal protein L2) that were up‐regulated in the presence of toxic inhibitors. TISTR 551 planktonic cells possessed two types of protein in the group of 30S ribosomal proteins and motility proteins that were up‐regulated.     

Multi-scale analysis of responses of stream macrobenthos to forestry activities and environmental context

1. Forestry activities can greatly modify the structure and function of invertebrate communities in streams, but the ability to detect effects of forestry may depend on the spatial scale considered, the choice of response metric and the environmental context. In this study, a multi‐scale, multi‐metric approach was used to compare the usefulness of proximate and larger‐scale measurements of forestry activity for understanding the impacts of forestry on stream macrobenthos. 2. Site‐specific responses of macrobenthic communities to forestry activities measured at four spatial scales (sub‐basin and 8‐, 2‐ and 0.5‐km radii upstream of study sites) were examined for 90 riffle sites distributed among 22 tributary streams (Strahler order 1–5) of the Cascapedia River basin, Quebec, Canada. 3. Multiple regression models and canonical correspondence analysis were used to relate six biological metrics (taxonomic richness, numerical density, biomass density, normalised biomass spectrum, individual body mass and community structure) to variables quantifying logging 1–19 years prior to the study and road density. Environmental predictors (variables quantifying local habitat or landscape features) were included in all analyses to statistically account for environmental context and increase the likelihood of detecting potentially subtle forestry impacts. 4. Forestry activities measured at the larger (sub‐basin and 8 km) scales were linked to decline in taxonomic richness, increase in numerical and biomass densities and shift in size structure of benthic macroinvertebrates, indicating that analyses encompassing larger areas, up to the full basin, may allow for more sensitive detection of effects than those of more limited span. 5. These responses primarily reflected marked increases in the abundance of chironomids and decline in the number of trichopteran taxa with increasing areal coverage of recent (≤2–4 years) cuts, suggesting that larger, longer‐lived and possibly more specialised taxa were more vulnerable to forestry impacts than smaller, multivoltine, generalist invertebrates. After partialling out the influence of other variables, rapid decline in richness occurred even when <1% of the basin had been clear cut in the year prior to the study. 6. Effects of forestry were detected after statistically accounting for natural environmental variability, which may have otherwise concealed those effects. The combined use of multiple biological metrics, partialling out of environmental effects and measurement of impacts at multiple spatial scales may be a broadly applicable approach for enhancing sensitivity and facilitating interpretation in studies of anthropogenic effects on macroinvertebrate communities.     

Flow cytometric and microscopic analysis of the effect of tannic acid on plant nuclei and estimation of DNA content

• Background and Aims Flow cytometry (FCM) is extensivelyused to estimate DNA ploidy and genome size in plants. In orderto determine nuclear DNA content, nuclei in suspension are stainedby a DNA-specific fluorochrome and fluorescence emission isquantified. Recent studies have shown that cytosolic compoundsmay interfere with binding of fluorochromes to DNA, leadingto flawed data. Tannic acid, a common phenolic compound, maybe responsible for some of the stoichiometric errors, especiallyin woody plants. In this study, the effect of tannic acid onestimation of nuclear DNA content was evaluated in Pisum sativumand Zea mays, which were chosen as model species. • Methods Nuclear suspensions were prepared from P. sativumleaf tissue using four different lysis buffers (Galbraith's,LB01, Otto's and Tris.MgCl₂). The suspensions were treated withtannic acid (TA) at 13 different initial concentrations rangingfrom 0·25 to 3·50 mg mL^–1. After propidiumiodide (PI) staining, samples were analysed using FCM. In additionto the measurement of nuclei fluorescence, light scatter propertieswere assessed. Subsequently, a single TA concentration was chosenfor each buffer and the effect of incubation time was assessed.Similar analyses were performed on liquid suspensions of P.sativum and Z. mays nuclei that were isolated, treated and analysedsimultaneously. FCM analyses were accompanied by microscopicobservations of nuclei suspensions. • Key Results TA affected PI fluorescence and light scatterproperties of plant nuclei, regardless of the isolation bufferused. The least pronounced effects of TA were observed in Tris.MgCl₂buffer. Samples obtained using Galbraith's and LB01 bufferswere the most affected by this compound. A newly described ‘tannicacid effect’ occurred immediately after the addition ofthe compound. With the exception of Otto's buffer, nuclei ofP. sativum and Z. mays were affected differently, with pea nucleiexhibiting a greater decrease in fluorescence intensity. • Conclusions A negative effect of a secondary metabolite,TA, on estimation of nuclear DNA content is described and recommendationsfor minimizing the effect of cytosolic compounds are presented.Alteration in light scattering properties of isolated nucleican be used as an indicator of the presence of TA, which maycause stoichiometric errors in nuclei staining using a DNA intercalator,PI.     

Temperature × light interaction and tolerance of high water temperature in the planktonic freshwater flagellates Cryptomonas (Cryptophyceae) and Dinobryon (Chrysophyceae)

Using microcosm experiments, we investigated the interactive effects of temperature and light on specific growth rates of three species each of the phytoplanktonic genera Cryptomonas and Dinobryon. Several species of these genera play important roles in the food web of lakes and seem to be sensitive to high water temperature. We measured growth rates at three to four photon flux densities ranging from 10 to 240 μmol photon · m^?2 · s^?1 and at 4–5 temperatures ranging from 10°C to 28°C. The temperature × light interaction was generally strong, species specific, and also genus specific. Five of the six species studied tolerated 25°C when light availability was high; however, low light reduced tolerance of high temperatures. Growth rates of all six species were unaffected by temperature in the 10°C–15°C range at light levels ≤50 μmol photon · m^?2 · s^?1. At high light, growth rates of Cryptomonas spp. increased with temperature until the temperature optimum was reached and then declined. The Dinobryon species were less sensitive than Cryptomonas spp. to photon flux densities of 40 μmol photon · m^?2 · s^?1 and 200 μmol photon · m^?2 · s^?1 over the entire temperature range but did not grow under a combination of very low light (10 μmol photon · m^?2 · s^?1) and high temperature (≥20°C). Among the three Cryptomonas species, cell volume declined with temperature and the maximum temperature tolerated was negatively related to cell size. Since Cryptomonas is important food for microzooplankton, these trends may affect the pelagic carbon flow if lake warming continues.