Analysis of the delocalized Raman modes of conformationally disordered polypeptides.

Bands associated with delocalized vibrational modes were identified in the isotropic Raman spectra of a series of polyglycine oligomers in aqueous solution as zwitterions and as cations. The dependence of these bands on conformational disorder and chain length was determined. The observed dependence is closely mimicked in spectra calculated for a series of corresponding model polypeptides. The simulated spectra were calculated in a skeletal approximation for ensembles of conformationally disordered chains. As the chain length of the conformationally disordered polypeptides increases, the observed isotropic spectra rapidly approach the spectrum of the infinitely long disordered chain. Convergence is nearly complete at the tripeptide for both the zwitterion and the cation. The stimulated spectra behave in essentially the same way. Convergence to the spectrum of the infinitely long chain is much more rapid for the conformationally disordered polyglycines than for the ordered polyglycines because of the mode localization that results from disorder. In the low-frequency region the bands in the calculated spectra have frequencies that are systematically dependent on chain length. These bands are related to the longitudinal acoustic modes of the ordered chain.     

Electromyogram median frequency, spectral compression and muscle fibre conduction velocity during sustained sub-maximal contraction of the brachioradialis muscle.

Changes in the median frequency of the power spectrum of the surface electromyogram (EMG) are commonly used to detect muscle fatigue. Previous research has indicated that changes in the median frequency are related to decreases in muscle fibre conduction velocity (MFCV) during sustained fatiguing contractions. However, in experimental studies the median frequency has been consistently observed to decrease by a relatively greater amount than MFCV. In this paper, a new estimate of EMG frequency compression, the Spectral Compression Estimate (SCE), is compared with the median frequency of the EMG power spectrum, the median frequency of the EMG amplitude spectrum and MFCV measured during sustained, isometric, fatiguing contractions of the brachioradialis muscle at 30, 50 and 80% maximum voluntary contraction (MVC). The SCE is found to provide a better estimate of the observed changes in MFCV than the median frequency of either the EMG power spectrum or EMG amplitude spectrum.     

A new analysis for membrane noise. The integral spectrum.

A new method of random data analysis has been developed with special implications for membrane noise. The integral spectrometer uses overlapping broad-band filters of simple design, whose bandwidth increases linearly with center frequency. A random two-state process, which has a Lorentzian-shaped spectral density, results in an integral spectrum whose maximum value occurs at the mean frequency of the events, and which is symmetric about that frequency on a semilog plot. 1/f noise is flat and does not distort the symmetry on the frequency axis. The integral spectrum exchanges resolution on the frequency axis for accuracy in the amplitude. The expected statistical error in amplitude has been calculated for three types of membrane noise assuming finite data. The integral spectrum compares favorably with conventional spectral densities and may be a reasonable alternative for random data analysis.     

Evidence from 23Na NMR studies for the existence of sodium-channels in the brush border membrane of the renal proximal tubule

A fast Na+-exchange is shown to be present in isolated renal brush border membranes. The lower limit of the rate constant for this process, calculated from the 23Na-NMR spectrum is 580 sec-1. The actual exchange rate may be higher. A fast 7Li exchange is also shown to be present in the isolated membrane vesicles. The characteristic overshoot of the Na+ dependent D-glucose cotransport and Na+/H+ antiport can be demonstrated. The fact that neither treatment with papain, nor lowering of the temperature to 5 degrees C affected the 23Na-NMR spectra obtained in the renal brush border membrane vesicles is consistent with the possibility that the fast Na+-exchange occurs through a channel mechanism.     

FT-IR,FT-Raman spectra and DFT vibrational analysis of 2-aminobiphenyl

In this work, the Fourier transform infrared (FT-IR) and Fourier transform Raman (FT-Raman) spectra of 2-aminobiphenyl (2ABP) were recorded in the solid phase. The optimised geometry, frequency and intensity of the vibrational bands of 2ABP were obtained by the density functional theory (BLYP and B3LYP) methods with complete relaxation in the potential energy surface using 6-31G(d) basis set. The harmonic vibrational frequencies were calculated and the scaled values have been compared with experimental FT-IR and FT-Raman spectra. The observed and the calculated frequencies are found to be in good agreement. The experimental spectra also coincide satisfactorily with those of theoretically constructed spectrograms.     

Electrophysiological Studies of the Antrum Muscle Fibers of the Guinea Pig Stomach

The membrane potentials of single smooth muscle fibers of various regions of the stomach were measured, and do not differ from those measured in intestinal muscle. Spontaneous slow waves with superimposed spikes could be recorded from the longitudinal and circular muscle of the antrum. The development of tension was preceded by spikes but often tension appeared only when the slow waves were generated. Contracture in high K solution developed at a critical membrane potential of -42 mv. MnCl₂ blocked the spike generation, then lowered the amplitude of the slow wave. On the other hand, withdrawal of Na⁺, or addition of atropine and tetrodotoxin inhibited the generation of most of the slow waves but a spike could still be elicited by electrical stimulation. Prostigmine enhanced and prolonged the slow wave; acetylcholine depolarized the membrane without change in the frequency of the slow waves. Chronaxie for the spike generation in the longitudinal muscle of the antrum was 30 msec and conduction velocity was 1.2 cm/sec. The time constant of the foot of the propagated spike was 28 msec. The space constants measured from the longitudinal and circular muscles of the antrum were 1.1 mm and 1.4 mm, respectively.     

Dynamic reconstruction of the fish locomotor wave

Theoretical modeling substantiates the bionic solution of an optimal wave propulsor for water transport, which must have the amplitude and phase characteristics of the fish bending locomotor waves. Use is made of a computer model of multilink chain bending waves where arbitrary distributions can be set for amplitudes and phases of separate segments. With the linear increase in the amplitude of segmental oscillations, a numerical experiment determines the optimal phasing whereby each segment provides a maximal longitudinal component of the motive force. Two versions of hydrodynamic interaction of the segments with water are compared, implying (i) linear and (ii) quadratic drag: the optimal phasing of the transverse and longitudinal oscillations proves to be (i) orthogonal and (ii) nearly orthogonal. The computed bending wave shapes corresponding to dynamic optimization are consistent with the experimental data.     

植物叶片的相位解析光声光谱和光声相位谱

用相位解析法获得的未损伤植物叶片叶肉组织的光声光谱,与叶片的光声相位谱进行了比较．发现植物叶片的光声相位谱与叶绿体光吸收带之间呈现互补关系．叶片表皮的光声相位谱存在持有的波谷结构．不同调制频率的光声相位谱有较大的差异．这些现象表明光声相位谱与光声光谱一样,也可对未损伤的层状生物样品作深度剖面分析．     

Stability of the heart rate power spectrum over time in the conscious dog

The purpose of this experiment was to test the stability of the heart rate (HR) power spectrum over time in conscious dogs. HR was recorded for 1 h for each of six animals on 2 days. A Fast Fourier transform was used to derive the HR power spectrum for the 12 contiguous 5-min epochs comprising the 1-h recordings. Changes in frequency and amplitude of the various spectral peaks were quantitatively examined. We confirm the presence of two major concentrations of power centered around 0.02 (low frequency peak) and 0.32 Hz (high frequency peak). However, we observed variations in these spectral peaks, especially their amplitudes, both within each hour and from day 1 to day 2. The amplitudes of these two spectral peaks tended to vary reciprocally. HR power spectra based on 5 min of recorded data were also derived from an additional eight animals in both the lying and standing positions; the power spectra from these short recordings were sufficiently sensitive to detect redistributions in power due to changes in posture in all eight dogs. We conclude that: 1) data should be recorded for relatively long periods (e.g., 1 h) to characterize the HR power spectrum; 2) some variability in frequency and amplitude will persist across spectra even when based on longer data bases; 3) care should be taken to ensure that the subject's behavioral state is stable within the recording period; 4) shorter (e.g., 5 min) data bases are not suitable except for detecting relatively robust changes in the HR power spectrum.     

Nonlinear Right-Hand Polarized Wave in Plasma in the Electron Cyclotron Resonance Region

The propagation of a nonlinear right-hand polarized wave along an external magnetic field in subcritical plasma in the electron cyclotron resonance region is studied using numerical simulations. It is shown that a small-amplitude plasma wave excited in low-density plasma is unstable against modulation instability with a modulation period equal to the wavelength of the excited wave. The modulation amplitude in this case increases with decreasing detuning from the resonance frequency. The simulations have shown that, for large-amplitude waves of the laser frequency range propagating in plasma in a superstrong magnetic field, the maximum amplitude of the excited longitudinal electric field increases with the increasing external magnetic field and can reach 30% of the initial amplitude of the electric field in the laser wave. In this case, the energy of plasma electrons begins to substantially increase already at magnetic fields significantly lower than the resonance value. The laser energy transferred to plasma electrons in a strong external magnetic field is found to increase severalfold compared to that in isotropic plasma. It is shown that this mechanism of laser radiation absorption depends only slightly on the electron temperature.     

Probing the primary donor environment in the histidineM200-->leucine and histidineL173-->leucine heterodimer mutants of Rhodobacter capsulatus by light-induced Fourier transform infrared difference spectroscopy.

Light-induced P+QB-/PQB FTIR difference spectra of reaction centers (RCs) have been obtained from chromatophores lacking light-harvesting B800-850 antenna for Rhodobacter capsulatus wild type (WT) and for the two mutants HisM200-->Leu and HisL173-->Leu. The primary donor (P) in both mutants consists of a bacteriochlorophyll-bacteriopheophytin heterodimer. The most prominent difference between the WT and the mutant spectra is in the 1600-1200-cm-1 region. The WT spectrum displays large positive bands at approximately 1290, 1500-1430, and 1580-1530 cm-1. These three bands are either small or altogether absent in the heterodimer spectra. In addition, both heterodimer spectra compare well with the electrochemically generated BChla+/BChla spectrum [M?ntele, W.G., Wollenweber, A. M., Nabedryk, E., & Breton, J. (1988) Proc. Natl. Acad. Sci. U.S.A. 85, 8468-8472]. These observations indicate that the positive charge is localized on the monomeric BChl in the heterodimers. The overall shape of the ester and keto C = O signals in the BChla+/BChla spectrum is maintained in the in situ spectra although significant differences are observed in the frequency, width, and splitting of the bands. The shape of the signal at 1757/1744 cm-1 in HisL173-->Leu is comparable to the 1751/1737-cm-1 signal of BChla+/BChla in tetrahydrofuran, indicating a free 10a ester C = O of PM in HisL173-->Leu. The reduced amplitude of the negative 1740-cm-1 feature in both HisM200-->Leu and WT spectra suggests a hydrogen-bonded 10a ester C = O for PL.(ABSTRACT TRUNCATED AT 250 WORDS)     

Origin and properties of fluorescence emission from the extrinsic 33 kDa manganese stabilizing protein of higher plant water oxidizing complex

The fluorescence properties of the isolated extrinsic 33 kDa subunit acting as 'manganese stabilizing protein' (MSP) of the water oxidizing complex in photosynthesis was analyzed in buffer solution. Measurements of the emission spectra as a function of excitation wavelength, pH and temperature led to the following results: (a) under all experimental conditions the spectra monitored were found to be the composite of two contributions referred to as '306 nm band' and 'long-wavelength band', (b) the excitation spectra of these two bands closely resemble those of tyrosine and tryptophan in solution, respectively, (c) the spectral shape of the '306 nm band' is virtually independent on pH but its amplitude drastically decreases in the alkaline with a pK of 11.7, (d) the amplitude of the 'long-wavelength' emission band at alkaline pH slightly increases when the pH rises from 7.2 to about 11.3 followed by a sharp decline at higher pH, and (e) the shape of the overall spectrum at pH 7.2 is only slightly changed upon heating to 90 degrees C whereas the amplitude significantly declines. Based on these findings the two distinct fluorescence bands are ascribed to tyrosine(s) ('306 nm band') and the only tryptophan residue W241 of MSP from higher plants ('long-wavelength band') as emitters which are both embedded into a rather hydrophobic environment.     

Vibrational neutron spectroscopy of collagen and model polypeptides.

A pulsed source neutron spectrometer has been used to measure vibrational spectra (20-4000 cm-1) of dry and hydrated type I collagen fibers, and of two model polypeptides, polyproline II and (prolyl-prolyl-glycine)10, at temperatures of 30 and 120 K. the collagen spectra provide the first high resolution neutron views of the proton-dominated modes of a protein over a wide energy range from the low frequency phonon region to the rich spectrum of localized high frequency modes. Several bands show a level of fine structure approaching that of optical data. The principal features of the spectra are assigned. A difference spectrum is obtained for protein associated water, which displays an acoustic peak similar to pure ice and a librational band shifted to lower frequency by the influence of the protein. Hydrogen-weighted densities of states are extracted for collagen and the model polypeptides, and compared with published calculations. Proton mean-square displacements are calculated from Debye-Waller factors measured in parallel quasi-elastic neutron-scattering experiments. Combined with the collagen density of states function, these yield an effective mass of 14.5 a.m.u. for the low frequency harmonic oscillators, indicating that the extended atom approximation, which simplifies analyses of low frequency protein dynamics, is appropriate.     

Vibrational spectroscopy of biopolymers under mechanical stress: processing cellulose spectra using bandshift difference integrals

Mechanical stretching of covalent bonds, for example when a fibrous polymer is loaded in tension, results in their stretching vibrational bands in the infrared or Raman spectrum being shifted to lower frequency. Conversely stretching a hydrogen bond shifts the stretching vibrational mode of the donor covalent X-H bond to higher frequency. These band shifts are small and difficult to detect in complex regions of the spectrum where differently affected bands overlap. This paper describes a method of integrating the difference spectra (spectrum under tensile strain minus spectrum at zero tensile strain) to recover the shape of the bands that are shifted and the spectral variation in bandshift. The application of this method to two sets of vibrational spectra of cellulose under tension is described. In one example, C-O-C stretching bands of highly crystalline tunicate cellulose were observed to shift to lower frequency under axial strain. In the other example, a group of overlapping O-D stretching bands in partially deuterated cellulose showed varied bandshifts under axial strain, some bandshifts being positive as expected due to extension of axially oriented hydrogen bonds while others were negative. The possibility of constructing spectral plots of bandshift has the potential to clarify the interpretation of overlapped, shifting bands in the vibrational spectra of polymers under tension.     

Simulation of saturation transfer electron paramagnetic resonance spectra for rotational motion with restricted angular amplitude.

We have simulated both conventional (V1) and saturation transfer (V'2) electron paramagnetic resonance spectra for the case of Brownian rotational diffusion restricted in angular amplitude. Numerical solutions of the diffusion-coupled Bloch equations were obtained for an axially symmetric 14N nitroxide spin label with its principal axis rotating within a Gaussian angular distribution of full width delta theta at half maximum. Spectra were first calculated for a macroscopically oriented system with cylindrical symmetry (e.g., a bundle of muscle fibers or a stack of membrane bilayers), with the Gaussian angular distribution centered at theta 0 with respect to the magnetic field. These spectra were then summed over theta 0 to obtain the spectrum of a randomly oriented sample (e.g., a dispersion of myofibrils or membrane vesicles). The angular amplitude delta theta was varied from 0 degrees, corresponding to isotropic motion (order parameter = 0). For each value of delta theta, the rotational correlation time, tau r, was varied from 10(-7) to 10(-2) s, spanning the range from maximal to minimal saturation transfer. We provide plots that illustrate the dependence of spectral parameters on delta theta and tau r. For an oriented system, the effects of changing delta theta and tau r are easily distinguishable, and both parameters can be determined unambiguously by comparing simulated and experimental spectra. For a macroscopically disordered system, the simulated spectra are still quite sensitive to delta theta, but a decrease in tau r produces changes similar to those from an increase in delta theta. If delta theta can be determined independently, then the results of the present study can be used to determine tau r from experimental spectra. Similarly, if tau r is known, then delta theta can be determined.     

Fourier transform infrared studies of ribonuclease in H2O and 2H2O solutions

Fourier transform infrared transmission spectra have been obtained of the enzyme ribonuclease in both H₂O and ²H₂O. The resolution of the spectra have been enhanced by Fourier self-deconvolution procedures. The infrared spectrum of ribonuclease changes during exchange of the enzyme's amide hydrogens for deuterium and the exchange has been followed in the amide I and amide II spectral regions. The amide I band shifts towards lower wavenumbers during both the fast and slow phases of hydrogen exchange and the interpretation of these shifts has aided the band assignments. In particular these studies have allowed an assignment to be made for the high frequency component of the β-strand absorption that differs from that proposed previously. This paper represents the first example of the use of deconvoluted Fourier transform infrared spectra in conjunction with hydrogen-deuterium exchange in order to aid in the assignment of a proteins's infrared bands.     

Investigation of stretching vibrations of glycosidic linkages in disaccharides and polysaccharides with use of IR spectra deconvolution

The results are presented for the deconvolution of IR spectra of disaccharides and polysaccharides with alpha and beta configurations of the 1 --> 4 glycosidic linkage (maltose, cellobiose, amylose, and cellulose), as well as of their corresponding monosaccharides (alpha- and beta-D-glucose) in the 1200-920 cm(-1) frequency range. It is established that a characteristic of di- and polysaccharides with 1 --> 4 glycosidic linkage is the appearance of new absorption bands in the 1175-1140 cm(-1) spectral range, as opposed to the IR spectra of monosaccharides. This can be a spectroscopic manifestation of the glycosidic linkage formation. In the 1000-970 cm(-1) frequency range, absorption bands, which are not observed in the monomer spectrum, are separated as a result of the deconvolution of the IR spectra of cellobiose and cellulose. The number of bands in this range remains unchanged for maltose and amylose, as compared to the monomer spectra. It is shown that the application of the method of deconvolution leads to a considerable enhancement in the resolution of the absorption bands in the IR spectra of mono-, di-, and polysaccharides.     

Curvature-electric effect in black lipid membranes

Upon periodical bending of a BLM, by means of oscillating hydrostatic pressure with sound frequency, the generation of an a.c. electric current with the same frequency can be observed under short circuit conditions. Previously, this phenomenon was attributed by us to a displacement current due to the oscillating flexoelectric polarization. The latter is proportional to the membrane curvature and depends on the lipid dipole moment and surface charge.The theory of this effect is outlined here. Earlier results concerning dipolar and quadrupolar contributions to the total current are presented and new expressions about charge contributions are derived for the two basic regimes of free and blocked lateral lipid exchange.Further, a systematic study of the frequency dependence of the amplitude and phase of the curvature-electric signal from a bacterial phosphatidylethanolamine/n-decane BLM is reported. Constant membrane curvature at each vibration frequency was assured by a calibration of the capacitance current observed with a small transmembrane voltage.The frequency dependence of the curvature-electric current amplitude was characterized by two regions: low frequency plateau and high frequency slope, the boundary between them being about 160 Hz. Such behaviour suggested a switching of the mechanism of membrane polarization from free to blocked lateral lipid exchange. Frequency dependence of the phase shift was characterized by low frequency and high frequency plateaus and a gradual transition between them. From phase measurements on initially curved membranes the sign of the membrane flexo-coefficient was found to be negative.The influence of some modifiers of the surface charge and surface dipole, as well as of the membrane conductivity, upon the value of the effect was studied. Surface charge was separately measured by the internal field compensation method under an ionic strength gradient. The membrane flexoelectric coefficient was evaluated and compared to the theoretical predictions. A conclusion was drawn that under the present experimental conditions the main contribution to the effect comes from the curvatureinduced shift of the surface charge equilibrium.Presented at the Tenth International Liquid Crystal Conference, 15–21 July 1984, York, UK