The Living Planet Index: using species population time series to track trends in biodiversity

The Living Planet Index was developed to measure the changing state of the world's biodiversity over time. It uses time-series data to calculate average rates of change in a large number of populations of terrestrial, freshwater and marine vertebrate species. The dataset contains about 3000 population time series for over 1100 species. Two methods of calculating the index are outlined: the chain method and a method based on linear modelling of log-transformed data. The dataset is analysed to compare the relative representation of biogeographic realms, ecoregional biomes, threat status and taxonomic groups among species contributing to the index. The two methods show very similar results: terrestrial species declined on average by 25% from 1970 to 2000. Birds and mammals are over-represented in comparison with other vertebrate classes, and temperate species are over-represented compared with tropical species, but there is little difference in representation between threatened and non-threatened species. Some of the problems arising from over-representation are reduced by the way in which the index is calculated. It may be possible to reduce this further by post-stratification and weighting, but new information would first need to be collected for data-poor classes, realms and biomes.     

Analysing freshwater fish biodiversity records and respective conservation areas in Spain

The number of threatened freshwater fish species in Spain is among the highest recorded in Europe and includes a high percentage of endemic taxa. Investigated were the distribution of Spanish freshwater fish to identify priority areas for conservation and assess the extent to which freshwater fish are included in the existing network of protected areas. Considered were those threatened species recorded in the Spanish National inventories. From these data, several biodiversity indices were calculated and analysed. The results reveal important discrepancies between the national and international assessments of conservation status, whereby the current Spanish national catalogue needs updating to reconcile these inconsistencies. Several important areas for the conservation of freshwater fish lie outside protected areas. The results encourage the establishment of protected areas specifically for freshwater environments. An extensive database of Spanish freshwater fish species is needed to redefine priority areas and to maintain freshwater biodiversity.     

New conservation status for data-deficient endemic mammals of East Africa

Knowing the exact status of several species is unimaginable since the data available is not adequate to determine their category, they are classified as Data Deficient (DD) by the IUCN. Lack of sufficient information impedes the assessment of conservation status for DD species and could lead to missing conservation opportunities for rare mammals under multiple threats. It seems appropriate that available knowledge of each species should be recorded now because the next few decades will see even more human-induced changes. The main objective is to suggest a strategic framework and establishing categories to help overcome the uncertainty regarding the conservation status of endemic mammals of East Africa. Preliminary extinction risk categories were determined based on the IUCN Red List Criterion B particularly of criteria B1 which uses the extent of occurrence. We use quantile regression to model a relationship between the time since species discovery (50 years as a reference) and log-transformed range-size of mammal species (1–20,000 km² area for a threatened category). Mammals that were described more than 50 years ago and have an EOO of less than 20,000 km² are categorized under threatened status. We found a significant positive relationship between time since species discovery and geographic range size of the non-DD mammal species for all quantile levels (p < 0.05) allowed the use of time since species discovery and geographic range size to infer the proper red list category of species. Only 16 endemic mammals currently listed as Data Deficient, should continue to be listed as so (group A). The remaining species should be re-listed as threatened (17 species) and as non-threatened (25 species, groups C and D). Our finding reduced the number of DD species of mammals of East Africa from 32.04% to 8.83%. As of the investigation of the present study, 12 (70.6%) mammals suggested for threatened categories are small-sized shrews and bats. DD species introduce greater uncertainty in estimates of overall extinction risk to the endemics, and by no means are they such species that can be considered low priorities for research. DD mammals may still face high extinction risks and may be more frequently threatened than successfully evaluated mammals. These findings may hopefully contribute to a more efficient allocation of conservation funds and more efficient development of conservation plans using data available for almost all mammalian species.     

An overview of biodiversity and conservation status of steppes of the Anatolian Biogeographical Region

The Anatolian Biogeographical Region is unique in the Palearctic realm, with high plant and butterfly species richness and populations of globally threatened birds, mammals and herptiles (amphibians and reptiles). It is a place of diverse land-use practices, dating back to the earliest farming practices in the world. Among 10,930 species of vascular plants, birds, butterflies, mammals and herptiles distributed in Turkey, we identified 1130 living predominantly in steppic environments and being classified either as threatened, near-threatened or data deficient at the national level, if not globally. A total of 28 effective protected areas were present in the region, covering 1.5 % of the 391,597 km² land area. Only 16.2 % of the threatened and near-threatened species (n = 809) were distributed within the protected area network, ranging from 94.1 % for birds to as low as 12.9 % for vascular plants. The total area of steppe and steppe forest vegetation has been reduced by at least 44 % of its former extent due to diverse habitat destructive activities. The most significant threats arise from unsustainable agricultural activities including overgrazing, conversion to croplands and afforestation. To maintain steppe diversity, we propose a “to-do list”, including mainstreaming biodiversity, effective implementation of Turkey’s Rangeland Act, conducting effective environmental impact assessments, establishing an effective site network for steppe biodiversity conservation and filling gaps in scientific knowledge.     

Differences in two species-at-risk classification schemes for North American mammals

Several classification systems are used to rank species’ extinction risk. Assessments from two of these, IUCN and NatureServe, are often used to inform prioritisation of conservation resources and management strategies. However, despite their widespread use, they have rarely been compared. No research has assessed rank concordance specifically for mammals, while factors increasing the chance of mismatches between systems have not been investigated. In this study, consistency of IUCN/NatureServe extinction risk categorisation is compared for 409 classified extant American and Canadian mammals. Taxonomic bias in between-system mismatches is then analysed, and common ecological factors associated with mismatches are also identified. There was a significant positive correlation between IUCN and NatureServe ranks, although this was not strong (r_s = 0.504). Agreement was good for non-threatened categories: 97% of species classified as non-threatened by one system were classified likewise by the other. However, there was considerable discord in threatened categories, with 40% of species classified as threatened by one system and non-threatened by the other. In 89% of such cases, this was due to higher ranking by NatureServe, suggesting that this system is more conservative. Mismatches were identified for 102 of the 373 species with exact rankings on both systems (27%), and these were biased taxonomically with significantly more mismatches for Cetacea and fewer for Rodentia. Mismatches were more common for species with longer gestation periods, fewer offspring per year, and longer life expectancies (all traits associated with K-strategist species), as well as for species in higher trophic levels. Many mismatched species also had fragmented ranges and/or uncertain data. Recognition that IUCN and NatureServe ranks are not synonymous is essential. Assessments should be viewed as complementary and dual results should be used to inform species management. The need for more detailed population demographic data to improve extinction risk calculations should also be addressed.     

Applying red lists to the evaluation of agricultural habitat: regular occurrence of threatened birds,vascular plants,and bryophytes in field margins of Poland

Using the assessments of conservation status of flora and fauna, we discuss declining species in semi-natural field margins and stress the importance of these vanishing habitats. Seventy field margins in the diverse farmland of SW Poland were investigated with regard to their vascular plants, bryophytes and breeding birds. We checked the occurrence of threatened and conservation concern species, i.e. those listed in local, national or European threatened species lists, and birds with an unfavorable conservation status in Europe. Of a total of 673 species, 18 classified as threatened were recorded: 12 vascular plants (2.2 % of the total number of species), five bryophytes (5.6 %), and one bird species (2.0 %). Threatened plants occurred in 18.6 % of study plots, bryophytes in 20.0 % and birds in 12.9 %. Eleven bird species, noted in 95.7 % of study plots, had an unfavorable conservation status in Europe. Increasing volumes of trees and shrubs significantly increased the overall richness in each taxa. In percentage terms the occurrence of focal species in all three taxa tended to be higher in shrubby than in herbaceous and tree-lined margins. Our data demonstrate that field margins in Central European arable farmland regularly support rare and threatened species, and therefore deserve greater conservation efforts. Red lists along with alternative listing approaches can be employed to evaluate the biodiversity of fine-scale habitats, but their applicability depends on the taxonomic group and geographical scale of the lists, reflecting different conservation priorities.     

Do threatened hosts have fewer parasites? A comparative study in primates

1. Parasites and infectious diseases have become a major concern in conservation biology, in part because they can trigger or accelerate species or population declines. Focusing on primates as a well-studied host clade, we tested whether the species richness and prevalence of parasites differed between threatened and non-threatened host species. 2. We collated data on 386 species of parasites (including viruses, bacteria, protozoa, helminths and arthropods) reported to infect wild populations of 36 threatened and 81 non-threatened primate species. Analyses controlled for uneven sampling effort and host phylogeny. 3. Results showed that total parasite species richness was lower among threatened primates, supporting the prediction that small, isolated host populations harbour fewer parasite species. This trend was consistent across three major parasite groups found in primates (helminths, protozoa and viruses). Counter to our predictions, patterns of parasite species richness were independent of parasite transmission mode and the degree of host specificity. 4. We also examined the prevalence of selected parasite genera among primate sister-taxa that differed in their ranked threat categories, but found no significant differences in prevalence between threatened and non-threatened hosts. 5. This study is the first to demonstrate differences in parasite richness relative to host threat status. Results indicate that human activities and host characteristics that increase the extinction risk of wild animal species may lead simultaneously to the loss of parasites. Lower average parasite richness in threatened host taxa also points to the need for a better understanding of the cascading effects of host biodiversity loss for affiliated parasite species.     

Spatial and temporal scales relevant for conservation of dead-wood associated species: current status and perspectives

Dead wood is a key substrate for forest biodiversity, hosting a rich and often threatened biodiversity of wood-living species. However, the relationship between the occurrence of dead wood and associated species is modified by several environmental factors. Here we review the present state of knowledge on how dead wood on different spatial and temporal scales affects saproxylic biodiversity. We searched for peer-reviewed studies on saproxylic species that compared dead wood distribution on at least two spatial or temporal scales. We scanned close to 300 articles, of which 34 fit our criteria. 20 studies were directed towards the current amount of dead wood at different scale levels and how this relates to the abundance or occurrence of saproxylic species, embracing scales from 10 m to 10 km. 14 studies compared time-lagged effects of dead wood, covering time-lags from 25 years to more than 200 years. The reviewed articles focused mainly on European forest and addressed invertebrates (mostly beetles), alone or in combination with fungi (27 articles), fungi (six articles), or lichens (one article). Although the significance of dead wood for forest biodiversity is firmly established, the reviewed studies show that we still have limited knowledge of the relationship between saproxylic biodiversity and spatial and temporal scales. Based on the reviewed studies, we conclude that there is large variation in response to spatial and temporal dead wood patterns between different taxa and sub-groups. Still, several of the reviewed papers indicate that time-lagged effects deserve more attention, especially on a landscape scale and for specialized or red-listed species. Further work is required before firm management recommendations can be suggested.     

Incorporating climate change into recovery planning for threatened vertebrate species in southwestern Australia

Recovery plans are the main tool used for restoration of threatened species in Australia, and identification of key threatening processes is an important feature of them. The aim of this study was to identify how climate change can be incorporated into the recovery planning process using a case study of threatened vertebrates in a global biodiversity hotspot, southwestern Australia. Analysis of 79 recovery planning documents for threatened vertebrate species in the region found that prior to the year 2004, climate change was not included as a threatening process. Post 2004, 32 of 54 (59.3%) documents included climate change as a threatening process. Using bioclimatic modelling, 43 of these species were ranked in terms of their potential exposure to climate change, and a gradient of management intervention aimed at mitigating their exposure to climate change was proposed. This intervention gradient ranged from active management actions aimed at species potentially at risk of extinction due to climate change, through to preservation of habitat in species predicted to lose between 0 and 25% of their current population size. It was proposed that as a priority, the recovery documentation of the 20 species predicted to be most at risk and thus needing a high level of management intervention should identify climate change as a key threatening process, and that more comprehensive analyses of climate change vulnerability be undertaken for these species. Such an approach aimed at prioritising climate change mitigation in threatened species would be useful for other regions where it has been predicted that climate change could have a negative impact on biodiversity.     

Extinction trends of threatened invertebrates in peninsular Spain

Using information from two recently published atlases of threatened invertebrate species in peninsular Spain, we examined the climatic, land use and geographic characteristics of the 100 km² UTM cells with most likelihood of suffering extinctions (extinction cells), as well as the attributes of the species prone to population extinctions. Extinction cells have had significantly (1) lower precipitation values, (2) higher temperatures, (3) higher percentages of anthropic land uses or (4) higher rates of anthropization during the last 20 years than the remaining cells. Nevertheless, probable extinctions may occur under a wide range of climatic and anthropization change rates and these variables can only explain a low proportion (~5 %) of variability in the occurrence or number of extinction cells. Aquatic species seem to suffer higher local extinction rates than terrestrial species. Interestingly, many invertebrate species with approximately 25 or less occurrence cells are on a clear trajectory towards extinction. These results outline the difficulties and uncertainties in relating probable population extinctions with climatic and land use changes in the case of invertebrate data. However, they also suggest that a third of the considered Spanish threatened species could have lost some of their populations, and that current conservation efforts are insufficient to reverse this tendency.     

Bycatch species composition over time by tuna purse-seine fishery in the eastern tropical Atlantic Ocean

Within the Ecosystem-based fisheries management framework, we evaluated the changes over time in bycatch species of the European tuna purse-seine fishery operating in the eastern Atlantic Ocean. Bycatch data was collected during two scientific observer programs conducted in the late 1990s and in the late 2000s. Over these two time periods, we compared the temporal trends in bycatch species composition, the probability of occurrence of functional groups per fishing set, the spatio-temporal species richness and the potential impact on several species listed in the red list of the International Union for Conservation of Nature (IUCN). The analyses were performed separately on the two main fishing modes of the fleet, i.e. sets on free-swimming school sets and on fish aggregating devices (FADs). Owing data quality constraints, we did not estimate bycatch rates. Ours results showed that the species composition of sharks caught on FADs decreased over time. The total species richness was higher for FAD sets than for free-swimming school sets (87 vs. 61 species respectively), such difference is common between fishing modes worldwide. For the species catalogued as threatened by the IUCN, in free-swimming schools, 25.5 % of the species caught during first period increased to 30.4 % during second period, while for FAD-fishing the increase was from 28.8 % during first period to 34.9 % in second period. Ours findings suggest that tropical tuna purse-seine fisheries should include ecosystem-based governance of bycatch. Effective tuna management will require a combination of technological improvements for mitigating incidental catch of vulnerable species, best use of byproduct species, regulations in fishing practices and in spatial distribution of fishing effort, and international agreements that, together, can monitor and manage bycatch, reducing the negative fishing effects on the epipelagic ecosystem biodiversity.     

Seed dispersal strategies and the threat of defaunation in a Congo forest

Seed dispersal mode of plants and primary interactions with animals are studied in the evergreen Afrotropical forest of LuiKotale, at the south-western part of Salonga National Park (DR Congo). We first analysed seed dispersal strategies for (a) the plant species inventoried over a decade at the study site and (b) the tree community in 12 × 1 ha census plots. Our analyses of dispersal syndromes for 735 identified plant species show that 85 % produce fleshy fruits and rely on animals for primary seed dispersal. Trees depending on animals for primary dispersal dominate the tree community (95 %), while wind-dispersed and autochorous trees are rare in mixed tropical forests. A list of frugivorous vertebrate species of the ecosystem was established. Among the fruit-eating vertebrate species identified in the ecosystem, forest elephants and bonobos are threatened with extinction (IUCN, The IUCN red list of threatened species, 2012). Although most of the species listed previously are internationally and regionally protected, all the species we observed dispersing seeds are hunted, fished or trapped by humans in the area. With the exception of bush pigs, seed predators, mainly small-sized animals, are generally not targeted by hunters. As a consequence, we expect human pressure on key animal species to impact the plant community. We suggest defaunation to be considered as major conservation problem. Thus, not only for the sake of animal species but also for that of plant species conservation, anti-poaching measures should have priority in both “protected” and unprotected areas. Defaunation could bring a new impoverished era for plants in tropical forests.     

Assessing Risks to Non-Target Species during Poison Baiting Programs for Feral Cats

Poison baiting is used frequently to reduce the impacts of pest species of mammals on agricultural and biodiversity interests. However, baiting may not be appropriate if non-target species are at risk of poisoning. Here we use a desktop decision tree approach to assess the risks to non-target vertebrate species in Australia that arise from using poison baits developed to control feral house cats (Felis catus). These baits are presented in the form of sausages with toxicant implanted in the bait medium within an acid-soluble polymer capsule (hard shell delivery vehicle, or HSDV) that disintegrates after ingestion. Using criteria based on body size, diet and feeding behaviour, we assessed 221 of Australia''s 3,769 native vertebrate species as likely to consume cat-baits, with 47 of these likely to ingest implanted HSDVs too. Carnivorous marsupials were judged most likely to consume both the baits and HSDVs, with some large-bodied and ground-active birds and reptiles also consuming them. If criteria were relaxed, a further 269 species were assessed as possibly able to consume baits and 343 as possibly able to consume HSDVs; most of these consumers were birds. One threatened species, the Tasmanian devil (Sarcophilus harrisii) was judged as definitely able to consume baits with implanted HSDVs, whereas five threatened species of birds and 21 species of threatened mammals were rated as possible consumers. Amphibia were not considered to be at risk. We conclude that most species of native Australian vertebrates would not consume surface-laid baits during feral cat control programs, and that significantly fewer would be exposed to poisoning if HSDVs were employed. However, risks to susceptible species should be quantified in field or pen trials prior to the implementation of a control program, and minimized further by applying baits at times and in places where non-target species have little access.     

The role of fire in terrestrial vertebrate richness patterns

Productivity is strongly associated with terrestrial species richness patterns, although the mechanisms underpinning such patterns have long been debated. Despite considerable consumption of primary productivity by fire, its influence on global diversity has received relatively little study. Here we examine the sensitivity of terrestrial vertebrate biodiversity (amphibians, birds and mammals) to fire, while accounting for other drivers. We analyse global data on terrestrial vertebrate richness, net primary productivity, fire occurrence (fraction of productivity consumed) and additional influences unrelated to productivity (i.e., historical phylogenetic and area effects) on species richness. For birds, fire is associated with higher diversity, rivalling the effects of productivity on richness, and for mammals, fire's positive association with diversity is even stronger than productivity; for amphibians, in contrast, there are few clear associations. Our findings suggest an underappreciated role for fire in the generation of animal species richness and the conservation of global biodiversity.     

Patterns of Vertebrate Diversity and Protection in Brazil

Most conservation decisions take place at national or finer spatial scales. Providing useful information at such decision-making scales is essential for guiding the practice of conservation. Brazil is one of the world’s megadiverse countries, and consequently decisions about conservation in the country have a disproportionate impact on the survival of global biodiversity. For three groups of terrestrial vertebrates (birds, mammals, and amphibians), we examined geographic patterns of diversity and protection in Brazil, including that of endemic, small-ranged, and threatened species. To understand potential limitations of the data, we also explored how spatial bias in collection localities may influence the perceived patterns of diversity. The highest overall species richness is in the Amazon and Atlantic Forests, while the Atlantic Forest dominates in terms of country endemics and small-ranged species. Globally threatened species do not present a consistent pattern. Patterns for birds were similar to overall species richness, with higher concentrations of threatened species in the Atlantic Forest, while mammals show a more generalized pattern across the country and a high concentration in the Amazon. Few amphibians are listed as threatened, mostly in the Atlantic Forest. Data deficient mammals occur across the country, concentrating in the Amazon and southeast Atlantic Forest, and there are no data deficient birds in Brazil. In contrast, nearly a third of amphibians are data deficient, widespread across the country, but with a high concentration in the far southeast. Spatial biases in species locality data, however, possibly influence the perceived patterns of biodiversity. Regions with low sampling density need more biological studies, as do the many data deficient species. All biomes except the Amazon have less than 3% of their area under full protection. Reassuringly though, rates of protection do correlate with higher biodiversity, including higher levels of threatened and small-ranged species. Our results indicate a need for expanded formal protection in Brazil, especially in the Atlantic forest, and with an emphasis on fully protected areas.     

Floodplain lake fish assemblages in the Amazon River: directions in conservation biology

The Neotropical region is renowned for its high biodiversity, and the Amazon River basin contains the highest number of fish species of any river system in the world. In recent years, habitat fragmentation and exploitation of biotic resources have threatened biological integrity and provoked to need for sustainable management and conservation of the Amazon River system. We studied 36 floodplain lakes along 2000 km of the Amazon River. The fish assemblages associated with flood forests are moderately diverse, with low species dominance and reduced populations. To detect nestedness of fish assemblage composition in floodplain lakes, a nested subset analysis was performed on species presence–absence. The incidence matrix (species × lakes) was maximally packed using the Nestedness Temperature Calculator software. The results of ranking lakes and species allow us to establish targets for conservation. Such strategy for sustainable management should be focused on maintaining the Amazonian biodiversity.     

The biodiversity of the United Kingdom’s Overseas Territories: a stock take of species occurrence and assessment of key knowledge gaps

Limited financial resources for conservation and growing environmental problems make it vital to base conservation on sound scientific evidence. Small islands hold a disproportionately large amount of the worlds threatened biodiversity but it is among the least well-documented. This paper reports on the most extensive collation and synthesis of biodiversity data to date for the 14 United Kingdom Overseas Territories (UKOTs). A process of literature review and consultation produced 65,259 species records, including 32,216 native species of which 1549 were endemic to a single UKOT. The extent of knowledge of species occurrence varied both between islands and taxonomic groups. It was higher for vertebrates and vascular plants than small bodied invertebrates and non-vascular and for non-Caribbean compared to Caribbean islands, a difference that largely reflects knowledge of invertebrates. Global Red List assessments exist for 2606 species and document 111 of endemic species, 75 % of those assessed, and 291, 12 % of non-endemics, as globally threatened. Using the data to estimate true species richness suggests a further 70,000 native species, including 1800 single island endemics, remain to be documented suggesting the UKOTs as a whole may support over 100,000 native species including 3300 single island endemics.     

Spatially Explicit Trends in the Global Conservation Status of Vertebrates

The world''s governments have committed to preventing the extinction of threatened species and improving their conservation status by 2020. However, biodiversity is not evenly distributed across space, and neither are the drivers of its decline, and so different regions face very different challenges. Here, we quantify the contribution of regions and countries towards recent global trends in vertebrate conservation status (as measured by the Red List Index), to guide action towards the 2020 target. We found that>50% of the global deterioration in the conservation status of birds, mammals and amphibians is concentrated in <1% of the surface area, 39/1098 ecoregions (4%) and eight/195 countries (4%) – Australia, China, Colombia, Ecuador, Indonesia, Malaysia, Mexico, and the United States. These countries hold a third of global diversity in these vertebrate groups, partially explaining why they concentrate most of the losses. Yet, other megadiverse countries – most notably Brazil (responsible for 10% of species but just 1% of deterioration), plus India and Madagascar – performed better in conserving their share of global vertebrate diversity. Very few countries, mostly island nations (e.g. Cook Islands, Fiji, Mauritius, Seychelles, and Tonga), have achieved net improvements. Per capita wealth does not explain these patterns, with two of the richest countries – United States and Australia – fairing conspicuously poorly. Different countries were affected by different combinations of threats. Reducing global rates of biodiversity loss will require investment in the regions and countries with the highest responsibility for the world''s biodiversity, focusing on conserving those species and areas most in peril and on reducing the drivers with the highest impacts.     

Targeting Global Protected Area Expansion for Imperiled Biodiversity

Governments have agreed to expand the global protected area network from 13% to 17% of the world''s land surface by 2020 (Aichi target 11) and to prevent the further loss of known threatened species (Aichi target 12). These targets are interdependent, as protected areas can stem biodiversity loss when strategically located and effectively managed. However, the global protected area estate is currently biased toward locations that are cheap to protect and away from important areas for biodiversity. Here we use data on the distribution of protected areas and threatened terrestrial birds, mammals, and amphibians to assess current and possible future coverage of these species under the convention. We discover that 17% of the 4,118 threatened vertebrates are not found in a single protected area and that fully 85% are not adequately covered (i.e., to a level consistent with their likely persistence). Using systematic conservation planning, we show that expanding protected areas to reach 17% coverage by protecting the cheapest land, even if ecoregionally representative, would increase the number of threatened vertebrates covered by only 6%. However, the nonlinear relationship between the cost of acquiring land and species coverage means that fivefold more threatened vertebrates could be adequately covered for only 1.5 times the cost of the cheapest solution, if cost efficiency and threatened vertebrates are both incorporated into protected area decision making. These results are robust to known errors in the vertebrate range maps. The Convention on Biological Diversity targets may stimulate major expansion of the global protected area estate. If this expansion is to secure a future for imperiled species, new protected areas must be sited more strategically than is presently the case.