Taxonomic and Distributional Databases of Fishes in Taiwan

The fishes of Taiwan comprise total 2450 species in 250 families, about 1/10 of the world's fishes. Curatorial and distributional data of Taiwanese fish have been integrated into a database that can be accessed interactively on the Internet at http://fishdb.sinica.edu.tw. The database includes the following items: basic information and specimen photo of each species, distributional database, bibliographic database, curatorial database, inquiring system for Chinese fish names of the world fishes, and new version of erratum of Fishes of Taiwan. The above regional database of Taiwanese fishes provides hyperlinks to fish data for each species in the global fish data, FishBase, of ICLARM (http://www.fishbase.org). Through the collaboration with FishBase and other global networks for taxonomic purposes, like Species 2000, BioNet, or GBIF (Global Biodiversity Information Facilities), users in the world can also obtain updated data provided by Taiwan. We hope our experience with database establishment can be used as a model to help other countries to develop their own regional fish databases or even to build up databases of other groups of organisms. There should be one good approach for all people in the world for sharing complete and updated biodiversity information via the Internet.     

Production of F1 interspecies hybrid offspring with cryopreserved sperm from a live-bearing fish, the swordtail Xiphophorus helleri

Despite study of sperm cryopreservation in more than 200 fish species, production of broods from cryopreserved sperm in live-bearing fish has not been demonstrated. This has not been due to a lack of effort, but instead is a result of the unique morphology, biology, and biochemistry of reproduction in viviparous fishes. For example, sperm of Xiphophorus helleri have a cylindrical nucleus, can swim for days after being activated, have glycolytic capabilities, and can reside in the female reproduction tract for months before fertilization. These traits are not found in fishes with external fertilization. The long-standing research use of the genus Xiphophorus has led to development of over 60 pedigreed lines among the 26 species maintained around the world. These species and lines serve as contemporary models in medical research, although they must be maintained as live populations. Previous attempts at establishing sperm cryopreservation protocols for Xiphophorus have not produced live young. To address this we have been studying the parameters surrounding cryobiology of Xiphophorus sperm and applying this information to an improved understanding of internal fertilization and reproduction. Here we report the first successful fertilization and offspring production by cryopreserved sperm in any live-bearing fish. This claim is supported by our use of artificial insemination between two species that yield distinct hybrid offspring to verify paternity via cryopreserved sperm. We provide a practical approach for preservation of valuable genetic resources from live-bearing fish species, a group that is rapidly being lost due to destruction of native habitats.     

Do coral-reef fish faunas have a distinctive taxonomic structure?

Do the highly diverse fish faunas that associate with coral reefs have distinguishing taxonomic and ecological characteristics, as proposed by Choat and Bellwood (1991) and Bellwood (1996)? Does a 50?my old (Eocene) fossil fish fauna from Italy represent a coral-reef fish assemblage that provides unique information about the evolution of such assemblages, as claimed by Bellwood (1996)? I compared the structure of the reef fish faunas of adjacent tropical regions rich and poor in coral reefs, in both America and Polynesia, and found that they exhibit no substantive differences in relative species richness among families of typical “coral-reef” fishes. While coral-rich regions have larger reef fish faunas, a variety of factors probably contribute to such differences. Thus coral-reef fish faunas may lack a distinctive taxonomic structure. A similar comparative approach would be useful for assessing whether assemblages of fishes on coral reefs have distinctive ecological characteristics. Based on patterns of habitat use by modern tropical shorefishes, the Italian Eocene fauna includes few definite reef fishes, and may well consist primarily of non-reef fishes preserved in a non-reef habitat. Until we know more about the environment in which those fossils were preserved, that fauna can contribute little to understanding how coral reef fish assemblages have evolved.     

Do non‐native fish as prey favour the conservation of the threatened indigenous Eurasian otter?

1. Biological invasions are considered a major threat to biodiversity. Most research has focused on the distribution, biology and impacts of non‐native species on native fauna and flora. However, few studies have explored their role as prey for native predators of conservation concern. 2. To assess the incidence and intensity of predation by the Eurasian otter Lutra lutra on established non‐native fish species, data were collated from the published literature. To be selected, studies had to cover at least 1 year, analyse more than 100 spraints and report the study period and percentage relative frequency (%RF) of all prey fish species. 3. To permit reliable, time‐related comparisons with %RF of non‐native fishes in otter diet, we also reviewed available information about both the distribution of non‐native fishes and history of their introductions to European countries, revealing a decrease with longitude in the number of naturalised non‐native fishes taken (ranging between 5 and 34) and their percentage in each fish assemblage. 4. Our selective criteria were met by 30 dietary studies from 44 study areas in 15 European countries during 1970–2010. The extent to which otters rely on non‐native fishes was almost negligible (mean %RF = 4.8), with the number of non‐native fishes preyed upon by otters decreasing with both latitude and longitude. 5. The %RF of non‐native fish in the diet increased slightly with time, with otters preying significantly more on non‐native fish in study areas where alterations of the fish assemblage had been highlighted in the reference papers. No relationship was found between otter diet breadth and the occurrence of non‐native fishes in their diet. 6. The current role of non‐native species in otter diet suggests that effective otter conservation management plans should focus on the maintenance and/or enhancement of native fish assemblages.     

When Does this Fish Spawn? Fishermen’s Local Knowledge of Migration and Reproduction of Brazilian Coastal Fishes

Fishermen’s local knowledge of fishing resources may be an important source of information to improve artisanal tropical fisheries management, such as those found in Brazil, where most data on fish biology is lacking. We aim to study the local ecological knowledge that Brazilian coastal fishers have about reproductive aspects (season, places and migration) of 13 coastal fish species of commercial importance. We selected fishermen with more than 30 years of fishing practice and we interviewed a total of 67 fishermen: 29 from the southeastern coast, from the communities of Puruba, Almada, Picinguaba and Bertioga, and 38 from the northeastern coast, from the communities of Valença, Arembepe and Porto Sauípe. In the interviews, we used standardized questionnaires and showed photos of fish species. Our results indicate some general patterns in fishes’ reproduction according to fishermen knowledge: fish species spawn in open ocean, near reefs or in coastal rivers (estuaries); some fishes reproduce during the summer and others in winter, while some have more defined spawning months. The main fish migratory patterns mentioned by interviewees were: long migrations along the coast, usually in the South to North direction, short migrations among reefs, fishes that do not migrate, migrations between the shore and open ocean and migrations between the sea and coastal rivers. Fishermen’s knowledge differed among fish species: most fishermen did not know spawning places or seasons of large pelagic fishes, which raised concerns of their possible depletion. We compared such ethnoichthyological information with available scientific data, indicating promising insights about reproduction and migration of Brazilian coastal fishes. Data gathered from local fishermen may provide inexpensive and prompt information, potentially applicable to fisheries management. Our approach might be useful to several other small-scale fisheries, especially the tropical ones, where there is a high diversity of target species and a low biological and ecological knowledge about these species.     

A Community of Curious Souls: An Analysis of Commenting Behavior on TED Talks Videos

The TED (Technology, Entertainment, Design) Talks website hosts video recordings of various experts, celebrities, academics, and others who discuss their topics of expertise. Funded by advertising and members but provided free online, TED Talks have been viewed over a billion times and are a science communication phenomenon. Although the organization has been derided for its populist slant and emphasis on entertainment value, no previous research has assessed audience reactions in order to determine the degree to which presenter characteristics and platform affect the reception of a video. This article addresses this issue via a content analysis of comments left on both the TED website and the YouTube platform (on which TED Talks videos are also posted). It was found that commenters were more likely to discuss the characteristics of a presenter on YouTube, whereas commenters tended to engage with the talk content on the TED website. In addition, people tended to be more emotional when the speaker was a woman (by leaving comments that were either positive or negative). The results can inform future efforts to popularize science amongst the public, as well as to provide insights for those looking to disseminate information via Internet videos.     

Estuarine fish behavior around slotted water control structures in a managed salt marsh

Estuaries are composed of multiple interconnected habitat types used by transient fish species during their period of estuarine residency. Structural marsh management restricts habitat connectivity and impedes the movement of fishes among these habitat types by limiting access via water control structures (WCSs) between the managed area and the rest of the estuary. While some general information on fish passage rates is available, species-specific information on passage through WCSs is lacking for salt marsh fishes. We monitored tagged fishes from March 2012 through November 2013 using passive integrated transponder antenna arrays at two identical WCSs in the Calcasieu Lake estuary, Louisiana, USA, to assess the effect of slotted WCSs on fish behavior. A total of 420 individuals of 15 species was tagged and released at the WCSs; of these, 145 individuals representing 11 species were later detected at the WCSs. Five species comprised most (93%) of the detected individuals: Elops saurus (n = 60), Mugil cephalus (n = 43), Sciaenops ocellatus (n = 20), Pogonias cromis (n = 7), and Ariopsis felis (n = 5). Passage rates were low, with most of the observed fishes (n = 80) passing only once through the structures. Other than E. saurus, which was only observed migrating out of the managed marsh, no clear pattern in swimming direction was observed for the other species. Detected species were all present primarily during the summer and fall, however, diel activity at the structures varied by species. The WCSs in our study area appeared to attract and congregate fishes, functioning more like ecological hotspots, rather than simply facilitating fish passage.     

Delivering interventions for depression by using the internet: randomised controlled trial

Objective To evaluate the efficacy of two internet interventions for community-dwelling individuals with symptoms of depression—a psychoeducation website offering information about depression and an interactive website offering cognitive behaviour therapy.Design Randomised controlled trial.Setting Internet users in the community, in Canberra, Australia.Participants 525 individuals with increased depressive symptoms recruited by survey and randomly allocated to a website offering information about depression (n = 166) or a cognitive behaviour therapy website (n = 182), or a control intervention using an attention placebo (n = 178).Main outcome measures Change in depression, dysfunctional thoughts; knowledge of medical, psychological, and lifestyle treatments; and knowledge of cognitive behaviour therapy.Results Intention to treat analyses indicated that information about depression and interventions that used cognitive behaviour therapy and were delivered via the internet were more effective than a credible control intervention in reducing symptoms of depression in a community sample. For the intervention that delivered cognitive behaviour therapy the reduction in score on the depression scale of the Center for Epidemiologic Studies was 3.2 (95% confidence interval 0.9 to 5.4). For the “depression literacy” site (BluePages), the reduction was 3.0 (95% confidence interval 0.6 to 5.2). Cognitive behaviour therapy (MoodGYM) reduced dysfunctional thinking and increased knowledge of cognitive behaviour therapy. Depression literacy (BluePages) significantly improved participants'' understanding of effective evidence based treatments for depression (P < 0.05).Conclusions Both cognitive behaviour therapy and psychoeducation delivered via the internet are effective in reducing symptoms of depression.     

Importance of live coral habitat for reef fishes

Live corals are the key habitat forming organisms on coral reefs, contributing to both biological and physical structure. Understanding the importance of corals for reef fishes is, however, restricted to a few key families of fishes, whereas it is likely that a vast number of fish species will be adversely affected by the loss of live corals. This study used data from published literature together with independent field based surveys to quantify the range of reef fish species that use live coral habitats. A total of 320 species from 39 families use live coral habitats, accounting for approximately 8 % of all reef fishes. Many of the fishes reported to use live corals are from the families Pomacentridae (68 spp.) and Gobiidae (44 spp.) and most (66 %) are either planktivores or omnivores. 126 species of fish associate with corals as juveniles, although many of these fishes have no apparent affiliation with coral as adults, suggesting an ontogenetic shift in coral reliance. Collectively, reef fishes have been reported to use at least 93 species of coral, mainly from the genus Acropora and Porities and associate predominantly with branching growth forms. Some fish associate with a single coral species, whilst others can be found on more than 20 different species of coral indicating there is considerable variation in habitat specialisation among coral associated fish species. The large number of fishes that rely on coral highlights that habitat degradation and coral loss will have significant consequences for biodiversity and productivity of reef fish assemblages.     

Quantifying the Search Behaviour of Different Demographics Using Google Correlate

Vast records of our everyday interests and concerns are being generated by our frequent interactions with the Internet. Here, we investigate how the searches of Google users vary across U.S. states with different birth rates and infant mortality rates. We find that users in states with higher birth rates search for more information about pregnancy, while those in states with lower birth rates search for more information about cats. Similarly, we find that users in states with higher infant mortality rates search for more information about credit, loans and diseases. Our results provide evidence that Internet search data could offer new insight into the concerns of different demographics.     

Fish Karyome: A karyological information network database of Indian Fishes

'Fish Karyome', a database on karyological information of Indian fishes have been developed that serves as central source for karyotype data about Indian fishes compiled from the published literature. Fish Karyome has been intended to serve as a liaison tool for the researchers and contains karyological information about 171 out of 2438 finfish species reported in India and is publically available via World Wide Web. The database provides information on chromosome number, morphology, sex chromosomes, karyotype formula and cytogenetic markers etc. Additionally, it also provides the phenotypic information that includes species name, its classification, and locality of sample collection, common name, local name, sex, geographical distribution, and IUCN Red list status. Besides, fish and karyotype images, references for 171 finfish species have been included in the database. Fish Karyome has been developed using SQL Server 2008, a relational database management system, Microsoft's ASP.NET-2008 and Macromedia's FLASH Technology under Windows 7 operating environment. The system also enables users to input new information and images into the database, search and view the information and images of interest using various search options. Fish Karyome has wide range of applications in species characterization and identification, sex determination, chromosomal mapping, karyo-evolution and systematics of fishes.     

Using PhotoVoice to Promote Land Conservation and Indigenous Well-Being in Oklahoma

Indigenous ancestral teachings commonly present individual and community health as dependent upon relationships between human and nonhuman worlds. But how do persons conversant with ancestral teachings effectively convey such perspectives in contemporary contexts, and to what extent does the general tribal citizenry share them? Can media technology provide knowledge keepers with opportunities to communicate their perspectives to larger audiences? What are the implications for tribal citizens’ knowledge and views about tribal land use policies? Using a PhotoVoice approach, we collaborated with a formally constituted body of Cherokee elders who supply cultural guidance to the Cherokee Nation government in Oklahoma. We compiled photographs taken by the elders and conducted interviews with them centered on the project themes of land and health. We then developed a still-image documentary highlighting these themes and surveyed 84 Cherokee citizens before and after they viewed it. Results from the pre-survey revealed areas where citizens’ perspectives on tribal policy did not converge with the elders’ perspectives; however, the post-survey showed statistically significant changes. We conclude that PhotoVoice is an effective method to communicate elders’ perspectives, and that tribal citizens’ values about tribal land use may change as they encounter these perspectives in such novel formats.     

Web image search revealed large-scale variations in breeding season and nuptial coloration in a mutually ornamented fish, <Emphasis Type="Italic">Tribolodon hakonensis</Emphasis>

Geographic variations in reproductive traits are important for evolutionary biology, but often difficult to investigate because of the need for a large-scale survey and the ephemeral nature of secondary sexual characteristics. Here, using web image searches (Google Images and Twitter), we revealed large-scale geographic variations (>1500 km) in breeding timing and nuptial coloration in the mutually ornamented fish, Japanese dace (Tribolodon hakonensis). As this fish is easily caught and many anglers upload their photographs on the web, we were able to find a total of 401 high-resolution photographs from all over Japan. Breeding periods were determined from dates of photographs with/without nuptial coloration, which matched with previous studies. We also found that breeding periods might have advanced three weeks over the last 80 years in the Chitose River, potentially because of climate change. Additionally, the pattern of latitudinal cline for breeding timing revealed delayed timing in higher latitudes, although regional variations were also high. Finally, we quantified the patterns of nuptial coloration for this mutually ornamented fish, and confirmed that over 80% of individuals showed typical colorations, but others showed rare phenotypes that were never previously described, including an intermediate coloration between T. hakonensis and a potentially hybridizing species, T. brandtii. Our web-based method for estimating breeding phenology could be adopted for organisms with temporal sexual characteristics, such as plants (e.g., flowering time) and some fishes. Web image analyses are still preliminarily with many limitations, but could be promising for investigating variations in visible traits.     

Les cyprinodontiformes (Poissons téléostéens) oligocènes de Ronzon,Le Puy-en-Velay (Haute-Loire): Anatomie et signification paléoécologique

The revision of the fossil fishes from the Lower Oligocene of Ronzon, Le Puy-en-Velay (Haute-Loire, France), leads one to give a more precise account of their main anatomical and meristic features. According to the rules of zoological nomenclature, the unique fish species known from this locality must be named Prolebias aymardi (Sauvage). Some palaeoecological characters of these fishes are specified.     

UCSC genome browser tutorial

The University of California Santa Cruz (UCSC) Genome Bioinformatics website consists of a suite of free, open-source, on-line tools that can be used to browse, analyze, and query genomic data. These tools are available to anyone who has an Internet browser and an interest in genomics. The website provides a quick and easy-to-use visual display of genomic data. It places annotation tracks beneath genome coordinate positions, allowing rapid visual correlation of different types of information. Many of the annotation tracks are submitted by scientists worldwide; the others are computed by the UCSC Genome Bioinformatics group from publicly available sequence data. It also allows users to upload and display their own experimental results or annotation sets by creating a custom track. The suite of tools, downloadable data files, and links to documentation and other information can be found at http://genome.ucsc.edu/.     

FishSounds Version 1.0: A website for the compilation of fish sound production information and recordings

Many fish species use active sound production for communication in numerous behaviors. Additionally, likely all fish can make passive or incidental sounds that may also serve some signal functions. Despite the ecological importance of fish sounds, their evident passive acoustic monitoring applications, and extensive endeavors to document soniferous fish diversity, the fields of bioacoustics and ichthyology have historically lacked an easily accessible, global inventory of known fish sound production. To alleviate this limitation, we developed http://FishSounds.net, a website that compiles and disseminates fish sound production information and recordings. FishSounds Version 1.0 launched in 2021, cataloging documented examinations for active and passive sound production for 1185 fish species from 837 references as well as 239 exemplary audio recordings. FishSounds allows users to search by taxa (e.g., family or common name), geographical distribution (e.g., region or water body), sound type, or reference. We have also made available the code used to create the website, so that it may be used in other data-sharing efforts—acoustic or otherwise. Subsequent versions of the website will update the data and improve the website functionality. FishSounds will advance research into fish behavior, passive acoustic monitoring, and human impacts on underwater soundscapes; serve as a resource for public outreach; and provide the foundation needed to investigate more of the 96% of fish species that lack published examinations of sound production. We further hope the FishSounds design, implementation, and engagement strategies will serve as a model for future data management and sharing efforts.     

Temperature Tolerances of North American Freshwater Fishes Exposed to Dynamic Changes in Temperature

Traditionally lower and upper temperature tolerances of fishes have been quantified in the laboratory via three different experimental approaches: the Fry or incipient lethal temperature (ILT), critical thermal (CTM) and chronic lethal (CLM) methodologies. Although these three experimental laboratory approaches generate endpoints which are quantitatively expressed as a temperature, are determined experimentally with random samples of fish acclimated to specific temperatures, and involve both time and temperature as major test variables, they do not quantify the same response. All three approaches generate valuable, albeit different, information concerning the temperature tolerance of a species. In this review we have summarized published research concerning the tolerance of North American freshwater fishes to dynamic changes in temperature, i.e., tolerance is tested by methods that gradually change temperatures until biological stress is observed. We found more than 450 individual temperature tolerances listed in 80 publications which present original dynamic temperature tolerance data for 116 species, 7 subspecies and 7 hybrids from 19 families of North American freshwater fishes. This total represents about 1/3 of the families and 1/6 of the known North American freshwater species. Temperature tolerance data were partitioned by experimental approach, i.e., critical thermal method (CTM) and chronic lethal method (CLM), and direction of temperature change. Although both CTM and CLM expose fish to dynamic changes in water temperature, these two methods differ in temperature change rates and test endpoints, and hence measure different aspects of thermal stress. A majority of the 80 studies employed CTM to assess temperature tolerance, in particular determination of CTmaxima. One or more CTmaxima has been reported for 108 fishes. Twenty-two fishes have reported highest CTmaxima of 40°C or higher. Several species in the family Cyprinodontidae have generated some of the highest CTmaxima reported for any ectothermic vertebrate. For a variety of reasons, data concerning tolerance of low temperatures are less plentiful. Low temperature tolerance quantified as either CTminima or CLminima were found for a total of 37 fishes. Acclimation temperature exerts a major effect on the temperature tolerance of most North American fish species and it is usually strongly linearly related to both CTmaxima and CTminima. Although we uncovered dynamic temperature tolerance data for 130 fishes, only a single dynamic, temperature tolerance polygon has been published, that for the sheepshead minnow, Cyprinodon variegatus.     

Alcohol Impairs Predation Risk Response and Communication in Zebrafish

The effects of ethanol exposure on Danio rerio have been studied from the perspectives of developmental biology and behavior. However, little is known about the effects of ethanol on the prey-predator relationship and chemical communication of predation risk. Here, we showed that visual contact with a predator triggers stress axis activation in zebrafish. We also observed a typical stress response in zebrafish receiving water from these conspecifics, indicating that these fish chemically communicate predation risk. Our work is the first to demonstrate how alcohol effects this prey-predator interaction. We showed for the first time that alcohol exposure completely blocks stress axis activation in both fish seeing the predator and in fish that come in indirect contact with a predator by receiving water from these conspecifics. Together with other research results and with the translational relevance of this fish species, our data points to zebrafish as a promising animal model to study human alcoholism.