Predator-prey interactions between Isochrysis galbana and Oxyrrhis marina. III. Mathematical modelling of predation and nutrient regeneration

A mathematical model was derived to simulate ingestion, growthand nitrogen (N) regeneration for the phagotrophic dinoflagellateOxyrrhis marina. Two types of experimental study were undertaken:prey-deplete O.marina were supplied with lsochrysis galbanain continuous darkness (thus preventing growth of the prey),and predator-prey interactions were also followed in culturesmaintained in a light-dark cycle (allowing growth of the prey).During light-dark cycles, Oxyrrhis volume increased more inthe light phase than in the dark. Digestion of isochrysis lasted{small tilde}0.3 days. with an average maximum ingestion rateof 55 prey predator–1 day–1 During active predation,30% of Oxyrrhis-carbon (C) was lost from the particulate phase:per day, with this loss falling to 10%: per day at the cessationof herbivory when cannibalism became noticeable. Ingestion wasmodelled as a function of prey density, C-loss and divisionas functions of cellular predator C. with cannibalism by Oxyrrhisalso included. Two N-regeneration expressions were investigated:one proposed by D.A.Caron and J.C.Goldman (Journal of Protozoology.35, 247–249, 1988) and an alternative function which relatedN regeneration to intracellular carbon and N based on the conceptof an optimal Oxyrrhis C:N ratio. The latter was more successfulin simulating batch culture data and did not require a priorcalculation of Oxyrrhis gross growth efficiency. The model ofOxyrrhis numbers, C and N contained only nine parameters whosevalues were fully obtainable from batch culture experiments.By using this model, we were able to use a single parameterset to simulate the transient dynamics of Oxyrrhis ingestingN-replete and N-stressed prey. Further experiments in whichOxyrrhis grew on Isochrysis in light-dark cycles were simulatedby combining the Oxyrrhis model with the nutrient-processingmodel for Isochrysis of K.Davidson et al. (Journal of PlanktonResearch, 15, 351–359, 1993). The dynamics of the fullpredator-prey model were found to be sensitive to the levelof sophistication of the prey model; the Quota model was foundto be less successful than the nutrient-processing prey model.Theoretical model runs indicated the importance of being ableto simulate changes in both prey numbers and biomass, and alsoin including realistic equations for nutrient regeneration frompredators in microbial predator-prey models.     

Influence of the 3'-UTR-length of mKIAA cDNAs and their Sequence Features to the mRNA Expression Level in the Brain

We have previously described the sequence features of 1500 mouseKIAA (mKIAA) genes in comparison with those of human KIAA genes(Okazaki, N., Kikuno, R., Inamoto, S., Hara, Y., Nagase, T.,Ohara, O., and Koga, H. 2002, DNA Res., 9, 179–188; Okazaki,N., Kikuno, R., Ohara, R., Inamoto, S., Aizawa, H., Yuasa, S.,Nakajima, D., Nagase, T., Ohara, O., and Koga, H. 2003, DNARes., 10, 35–48; Okazaki, N., Kikuno, R., Ohara, R., Inamoto,S., Koseki, H., Hiraoka, S., Saga, Y., Nagase, T., Ohara, O.,and Koga, H. 2003, DNA Res., 10, 167–180; and Okazaki,N., F-Kikuno, R., Ohara, R., Inamoto, S., Koseki, H., Hiraoka,S., Saga, Y., Seino, S., Nishimura, M., Kaisho, T., Hoshino,K., Kitamura, H., Nagase, T., Ohara, O., and Koga, H. 2004,DNA Res., 11, 205–218). To validate the orthologous relationshipbetween mKIAA and KIAA genes in detail, we examined their chromosomalpositions and evolutionary rate of synonymous substitutionsand confirmed that >93% of the mKIAA/KIAA gene pairs areorthologous. During the sequence analysis of mKIAA genes, wefound that 3'-untranslated region (3'-UTR) lengths of mKIAAand KIAA genes are extremely long. In the meanwhile, we havealso examined the tissue-specific expression of 1700 mKIAA genesusing cDNA microarray and verified predominantly their expressionin adult brain (Koga, H., Yuasa, S., Nagase, T., Shimada, K.,Nagano, M., Imai, K., Ohara, R., Nakajima, D., Murakami, M.,Kawai, M., Miki, F., Magae, J., Inamoto, S., Okazaki, N., Ohara,O. 2004, DNA Res., 11, 293–304). To connect these twoevidences, we statistically analysed the relationship betweenthem by using the mKIAA genes. Consequently, a positive correlationwas observed between the 3'-UTR lengths and the relative expressionintensities in adult brain. Furthermore, we searched sequenceelements in the 3'-UTR possibly related with their expressionand found some candidates regarding the brain-specific expression.     

PETALIFERA HABEI, A NEW SPECIES FROM JAPAN ADDENDUM

Since Petalifera habei was described in the Proceedings, 34,1, 12–18, April 1960, I have received from Dr. K. Babaa short account of the same species in Publ. Seto. mar. biol.Lab. 7, 3, 337–338. December, 1959, under the title "Thegenus Petalifera and a new species, P. ramosa, from Japan".I was unaware that Dr. Baba intended to describe it. As hispaper antedates mine, his name, Petalifera ramosa, must replaceP. Habei.     

Feeding selectivities and food niche separation of Acartia clausi, Penilia avirostris (Crustacea) and Doliolum denticulatum (Thaliacea) in Blanes Bay (Catalan Sea, NW Mediterranean)

Selectivity-size spectra, clearance and ingestion rates andassimilation efficiencies of Acartia clausi (Copepoda), Peniliaavirostris (Cladocera) and Doliolum denticulatum (Doliolida)from Blanes Bay (Catalan Sea, NW Mediterranean) were evaluatedin grazing experiments over a wide range of food concentrations(0.02–8.8 mm³ L^–1 plankton assemblages from BlanesBay, grown in mesocosms at different nutrient levels). Acartiaclausi reached the highest grazing coefficients for large algae>70 µm (longest linear extension), P. avirostris forintermediate food sizes between 15 and 70 µm, and D. denticulatumfor small sizes from 2.5 to 15 µm. Penilia avirostrisand D. denticulatum acted as passive filter-feeders. Acartiaclausi gave some evidence for a supplementary raptorial feedingmode. Effective food concentration (EFC) decreased linearlywith increasing nutrient enrichment for D. denticulatum andfollowed domed curves for A. clausi and for P. avirostris withmaximum values at intermediate and high enrichment levels, respectively.Clearance rates of crustacean species showed curvilinear responseswith narrow modal ranges to increasing food concentration. Clearancerates of D. denticulatum increased abruptly and levelled intoa plateau at low food concentrations. Mean clearance rates were13.9, 25.5 and 64.1 mL ind.^–1 day^–1, respectively.No clearance could be detected for A. clausi at food concentrations<0.1 mm³ L^–1 and for P. avirostris at food concentrations     

Parasitic Wasps Learn and Report Diverse Chemicals with Unique Conditionable Behaviors

Chemical Senses, 28, 545–549 Regrettably, an error occurred in Figure 3 of this     

The seasonal productivity of phytoplankton in a hypertrophic, gravel-pit lake

The seasonal time course of phytoplankton primary productivitywas studied weekly in a hypertrophic, gravel-pit lake closeto Madrid, Spain. Chlorophyll a ranged 22–445 mg m^–2.Gross primary productivity attained 0.28±0.14 g C m^–2h^–1 (range: 0.06–0.60), its yearly value being 900g C m^–2, but the shallow euphotic depths and the highplankton respiration ensured that net productivity was generallylow. Respiration losses amounted to 0.31±0.24 g O₂ m^–2h^–1, with phytoplankton respiration roughly attainingone-half of overall plankton respiration. Areal phytoplanktonproductivity and plankton respiration followed a seasonal trendbut this was not the case for photosynthetic capacity. Surfacephotoinhibition was evenly distributed throughout the study.Quantum yields showed an increasing depth trend, but no seasonaltrend. Both P_max and I_k were both temperature- and irradiance-dependent.As compared with lakes of lesser trophic degree, phytoplanktonprimary production in hypertrophic lakes might be increasednot only by higher nutrient contents but also by low chlorophyll-specificattenuation coefficients and low background, non-algal attenuation,thereby allowing for higher areal chlorophyll contents and hencehigher areal productivity. Our study suggests that physical(irradiance and water column stability) as well as chemicalfeatures (dissolved inorganic carbon and soluble reactive phosphorus)may control seasonality of phytoplankton primary productionin this lake despite recent claims that only physical factorsare of significance in hypertrophic lakes. However, this doesnot explain all the variability observed and so a food web controlis also likely to be operating.     

Temperature and Antarctic plankton community respiration

Antarctic plankton community respiration rates were determinedfrom in vitro changes in dissolved oxygen. Oxygen consumptionrates, measured at in situ temperatures between 0 and 6°C,were found to lie in the range 0.3–3.7 µmol O₂ l^–1per 24 h. Water samples were collected between East FalklandIsland and South Georgia, South Atlantic Ocean, and incubatedshipboard in the dark at up to 36 temperatures between –2and 14–C. A respiration rate at each temperature was thendetermined and used to calculate the temperature coefficient(Q₁₀) of Antarctic planktonic community respiration from theArrhenius equation. Fourteen Q₀ values lay in the range 1–3,with four further values >5. This range of temperature coefficientvalues for community respiration is comparable to the publishedrange of values for plankton photosynthesis. Frequency distributionsof temperature coefficients for the two processes show similarmodal Q₁₀5 of 2–3. Thus, this study does not lend supportto the hypothesis of a differential response of photosynthesisand community respiration to low temperature.     

Co-nutrient limitation of diatom growth under nitrogen or silicon limitation. A reply to the paper of Flynn and Martin-Jezequel

Flynn and Martin-Jézéquel (J. Plankton Res., 22,447–472, 2000) derived a mechanistic model for nitrogenand silicon physiology of diatoms. During their analysis, theycompared the output of this model with that of the co-nutrientmodel of Davidson and Gurney (J. Plankton Res., 21, 839–858,1999). They highlighted some discrepancies between the predictionsof the two models, which occurred subsequent to exhaustion ofthe yield-limiting nutrient, and suggested that the co-nutrientmodel contained technical inaccuracies in its output. Here itis shown that by simply modifying the numerical values of twoof the parameters of the co-nutrient model, while retainingexactly the same model structure, it is possible to producesimilar dynamics to those exhibited by the model of Flynn andMartin-Jézéquel.     

Gut evacuation rates and ingestion rates of Eudiaptomus graciloides measured by means of the gut fluorescence method

Journal of Plankton Research, 8, 973–983, 1986 FIg. 2. Time-dependent changes in the gut content (percentageof initial ng pigment) of E. gro.ciloides at different temperaturesunder simultaneous feeding. Fig. 4. The relationship between instantaneous evacuation rateand temperature of E. graciloides. The regresston equation forfeeding animals: y = 0.0044 e(0.141 ) (r² = 0.90). For comparisonthe results of non-feeding animals are indicated with open circles.     

Tintinnids and other microzooplankton--seasonal distributions and relationships to resources and hydrography in a Maine estuary

Journal of Plankton Research, 9, 65–77, 1987. In Table II on page 70 the number of Tintinnopsis minuta foundat 0 m depth on 15 September 1981 should be 1200.     

Effect of photoinhibition on algal photosynthesis: a dynamic model

Recent evidence from algal physiology and molecular biologyconfirms that photoinhibition is directly related to D1 proteindamage and recovery, and D1 protein damage leads to a decreasein electron transfer or an increase in turnover time of theelectron transfer chain. In this study, the turnover time ofthe electron transfer chain is defined as a function of therelative concentration of D1 protein in reaction centre II andthe photoinhibition processes due to D1 protein degradationare incorporated into a model of photosynthesis, initiated byDubinsky et al. (Plant Cell Physiol., 27, 1335–1349, 1986)and developed by Sakshaug et al. (Limnol. Oceanogr., 34, 198–205,1989). D1 protein damage is assumed to be both light and D1protein concentration dependent, and to be proportional to thecross-section of PSII (     

ERRATA

WARBURG, M. R., 1965. On the water economy of some Australianland snails. Proc. malac. Soc. Lond. 36, 297–305. Page 298: second line from bottom, should read ‘within± 1 µg for Themapupa’. Page 300: Fig. 2 legend, should read ‘Evaporative waterloss from Sinumelon remissum (a), Pleuroxia sp. (b) and Themapupaadelaidae (c)’. Page 300: section 4 heading, should read ‘Continuous curvesfor water loss’. Page 301: second line, for ‘Fig. 9’ read ‘Fig.3’. Page 301: Table 1, last line, for ‘0.120024’ read‘0.12024’. Present address: Israel Institute for Biological Research, Ness-Ziona,Israel.     

ERRATUM

R. MANLY. The larval development of Tricolia pullus (L.)J. moll.Stud. (1976) 42,361–369. The legends of Figs 2 and 3 shouldbe transposed.     

Effects of Blue Light Pretreatments on Internode Extension Growth in Mustard Seedlings after the Transition to Darkness: Analysis of the Interaction with Phytochrome

The effects of blue light (B) pretreatments on internode extensiongrowth and their possible interaction with phytochrome mediatedresponses were examined in Sinapis alba seedlings grown for11 d under 280 µmol m^–2 s^–1 of continuousblue-deficient light from low pressure sodium lamps (SOX). SupplementaryB (16 µmol m^–2 s^–1) caused no detectable inhibitionof the first internode growth rate under continuous SOX, butgrowth rate was inhibited after transfer to darkness. This effect,and the growth promotion caused by far-red bend-of-day' lightpulses were additive. The addition of B at 16 µmol m^–2s^–1 during 11 d, or only during the first 9 or 10 d orthe latest 0.75, 1 or 2 d of the SOX pretreatment caused approximatelythe same extent of inhibition after the transition to darkness.A single hour of supplementary B before darkness caused morethan 50% of the maximum inhibition. However, 24 h of lower fluencerates of B (4 or 7 µmol m^–2 s^–1) were ineffective.Covering the internode during the supplementary B period didnot prevent the response to B after the transition to darkness.Far-red light given simultaneously with B (instead of the SOXbackground) reduced the inhibitory effect of B. Above a given threshold fluence rate, B perceived mainly inthe leaves inhibits extension growth in subsequent darkness,provided that high phytochrome photo-equilibria are presentduring the irradiation with B. Once triggered, this effect doesnot interact significantly with the ‘end-of-day’phytochrome effect. Key words: Blue light, extension growth, phytochrome     

Effects of algal concentration, bacterial size and water chemistry on the ingestion of natural bacteria by cladocerans

Journal of Plankton Research, 11, 1273–1295, 1989. The values of P/U⁰ (Table I) and fluid velocity used to calculatethe energy required for sieving (pp. 1289–1290) and severalequations (footnote b of Table I; p. 1290, lines 3–4)are incorrect. The corrected table appears below: Table I. Filter setule measurements (mean and within specimenstandard deviation) of the gnathobases for the cladocerans studied^aGnathobaseof trunklimb number. ^bP = 8µU₀/(b(1 – 21nt + 1/6(t²) - 1/144(t⁴))), whereP = pressure drop in dyn cm^–2, =3.1416, U₀ = fluid velocityin cm s^–1, b = distance between setule centres in cm,t = ( x setule diameter)/b and µ = 0.0101 dyn s^–1cm^–2. Formula from Jørgensen (1983). The text (p. 1289, line 19 to p. 1290, line 10) should read: organism. Using a similar argument, a 0.5 mm Ceriodaphnia witha filter area of 0.025 mm² (Ganf and Shiel, 1985) and pressuredrop P = 2757 dyn cm^–2 (with fluid velocity of 0.07 cms^–1) allocates only 2171 ergs h^–1 to filtrationof a total energy expenditure of 10⁴ ergs h^–1 [filtrationenergy (ergs h^–1) = area (cm²) x pressure drop (dyn cm^–2)x 3600 (s h^–1) x 1/0.2 (efficiency of conversion of biochemicalinto mechanical work); total energy (ergs h^–1) = respiration(0.05 µl O₂ ind^–1 h^–1 consumed; Gophen, 1976)x conversion factor (2 x 10⁵ ergs µl^–1 O₂). Withan estimated 0.034 mm² in filter area, fluid velocity of 0.041cm s^–1 and respiration of 1.8 x 10⁴ ergs h^–1 (calculatedfrom Porter and McDonough, 1984), a 0.5 mm Bosmina uses <4%of its metabolism to overcome filter resistance. The velocities used in the original examples (0.4 cm s^–1for Ceriodaphnia, 0.2 cm s^–1 for Bosmina) were derivedfrom literature values of appendage beat rate and estimatesof the distance travelled by the appendages during each beatcycle. This approach unnecessarily assumes that all water movedpasses through the filter. In the new calculations, the flowacross the filter needed for food to be collected by sieving(0.07 cm s^–1 for Ceriodaphnia and 0.041 cm s^–1 forBosmina) was determined from the maximum clearance rate/filterarea. The amended energy expenditures, although higher, do notrefute the sieve model of particle collection.     

Vitamins, phytoplankton and bacteria: symbiosis or scavenging?

The conclusion that over 25% of global primary production dependson direct algal/bacterial symbiosis involving vitamin B₁₂ [Croftet al., (2005) Algae acquire vitamin B₁₂ through a symbioticrelationship with bacteria. Nature, 438, 90–93] is patentlyfalse, for it is based on a misconception of the probable levelof the vitamin B₁₂ requirement in marine pelagic algae. A reviewof the various published attempts at measuring this requirementsuggests that it is likely to be so low that oceanic and coastalconcentrations of the vitamin would usually be sufficient tosustain the populations that occur without the assistance ofdirect algal/bacterial symbiosis. The levels measured are discussedin relation to method (batch or continuous culture) and protocolsused. Requirement values considered by the author to be acceptablerange from 0.1 to 0.3 pM for the vitamin growth saturation constant(K_S) and from 30 to 100 µL algal biomass pmol^–1vitamin for the yield.     

BOTANICAL BRIEFING * An Overview of the Biology of the Desiccation-tolerant Resurrection Plant Myrothamnus flabellifolia

Annals of Botany 99: 211–217, 2007 There were problems in the reproduction of some figures in issues1 and 2 of volume 99 and we are happy     

Seed Viability Constants for Lettuce

Seeds of two lettuce cultivars (Lactuca sativa L., cv. Meikoninginand cv. Grand Rapids) were hermetically stored with constantmoisture contents ranging between 3.6 and 17.9 per cent (freshweight basis) at constant temperatures ranging between 5 and75 °C. The decline with time in percentage germination andpercentage normal seedlings was determined for each storagetreatment. The data were fitted to an equation which containsthe constants: K₁, the probit of the initial percentage germinationor normal seedlings; K_E, a species constant; C_W, the constantof a logarithmic moisture term; C_H, the constant of a lineartemperature term and C_Q, the constant of a quadratic temperatureterm. Regression analysis of data from storage periods up to5.5 years at temperatures of 5–75 °C and seed moisturecontents of 3.6–13.6 per cent yielded the following values:K_E= 8.218, C_W=4.797±0.163, C_H=0.0489±0.0050 andC_Q=0.000365±0.000056. Although this equation consistentlyprovided a better fit, simplified equations, assuming eithera log-linear relationship between seed longevity and temperature,or a log-linear relationship between seed longevity and bothmoisture content and temperature, accounted for more than 94per cent of the variation at the restricted temperature rangeof 5–40 °C. Longevity of the same seed lots at sub-zero temperatures (–5,–10 and –20 °C) was studied in separate tests.Freezing damage, resulting in abnormal seedlings in the germinationtest, occurred at –20 °C when the moisture contentof the seeds exceeded 12 per cent. No decline in percentagenormal seedlings was observed after a storage period of 18 monthsor longer at –20 °C, provided the seed moisture contentdid not exceed 9.5 per cent. For seeds stored at –5 and–10 °C with 9.6–12.5 per cent moisture content,the observed rate of decline of percentage normal seedlingswas adequately predicted by the viability equation, using theabove values for the constants. This suggests that for low moisturecontents the viability equation can be applied to estimate longevityat sub-zero temperatures. Lettuce, Lactuca sativa (L.), seed longevity, seed storage, viability constants, storage conditions     

Stem Photosynthesis not Pressurized Ventilation is Responsible for Light-enhanced Oxygen Supply to Submerged Roots of Alder (Alnus glutinosa)

Annals of Botany 96: 591–612, 2005 Unfortunately, the legend     

Total and Component Carbon Fluxes of a Scots Pine Ecosystem from Chamber Measurements and Eddy Covariance

Annals of Botany 99: 345–353, 2007 The authors regret that the