Copulation behaviour and paternity in shy albatrosses (Thalassarche cauta)

We investigated the mating system of shy albatrosses Thalassarche cauta by combining behavioural observations during the pre-laying period with genetic paternity analysis. Genetic data on the mating systems of several procellariiform seabirds have recently become available, but data on the reproductive behaviour of these species are rarely obtained. Our main aims were to describe the copulatory behaviour of this species and identify how males achieve within-pair and extra-pair paternity (EPP). Most copulations occurred on the nest, were unforced and were within-pair. Females controlled the success of copulations and were observed soliciting extra-pair matings. Within-pair and extra-pair copulations were behaviourally similar. A low frequency (7–10%, n =29 chicks) of EPP was detected despite male use of frequent copulation as a paternity guard. The pre-laying foraging exodus of female shy albatrosses differed from that in other albatrosses: it was relatively short in length, lasting c . 2 days, and within-pair copulations occurred after the female's return 2 days before laying. This may reflect the close proximity of feeding grounds to the breeding colony.     

Skewed reproductive success among male white-spotted charr land-locked by an erosion control dam: Implications for effective population size

In 1996 and 1997, the spawning behavior of fluvial white-spotted charr Salvelinus leucomaenis, was observed in the upstream area of an erosion control dam. A small number of males with relatively large body size mated successfully with females as a pair, while almost all satellite males did not sneak successfully, resulting in a non-random mating system. The low sneaking success of subordinate males, in addition to the monopolization of spawning opportunities by a few dominant males, is one of the most important causes of skewed reproductive success among males. The total number of adult fishes in the study area (N: approximately half of the whole tributary above a dam) was estimated as 148 and 102 in 1996 and 1997, respectively. Based on these findings and some further assumptions, the estimated effective population size (N_e) was low in both years. The N_e/N ratio ranged from 0.33 to 0.36 in both years. In addition to reduced population size by construction of an impassable dam, the above-dam population suffered low N_e due to skewed reproductive success among males. The low N_e may be one cause of extinction in above-dam populations of fluvial charr, especially just after the construction of impassable barriers.     

Impact of precocious male parr on the effective size of a wild population of Atlantic salmon

1. There is growing evidence that sexually mature but morphologically juvenile males of Atlantic salmon (precocious or mature male parr) actively participate in reproduction and, therefore, in the genetic composition of the populations of this species. The impact of mature male parr on the effective population size (N_e) of such populations has been previously studied under experimental settings, but no studies have been performed directly on natural populations. 2. Continuous monitoring and sampling of all sea returns is possible in the Lérez River (northwest of Spain). From demographic data on variances of reproductive success and genetic data from six microsatellite marker loci we carried out parentage assignment and assessed the impact of male parr on demographic and genetic estimates of N_e in two consecutive years. 3. Our results reveal that: (i) approximately 60% of the total sire paternity is attributable to mature parr; (ii) mature parr decrease the variance of reproductive success of males by a threefold factor and increase the effective population size of males by a 10‐fold factor; (iii) however, they do not substantially affect the variance of reproductive success and the effective size of females; (iv) mature parr increase two‐to threefold the overall effective size of the population but the ratio N_e/N, where N is the population size including or not mature parr in each case, is not affected.     

Why Do Female Birds Reject Copulations from their Mates?

Female birds frequently reject copulations from their mates, suggesting a conflict between the sexes. This study analyses behavioural data of socially monogamous razorbills, Alca torda, to examine whether females rejected their mates because of conflicts over fertilization or the pair bond. Among pairs, females rejected 9–70 % of their mates’ copulation attempts and prevented their mates from completing 42–100 % of successful copulations. Copulations terminated by females were half the duration of those terminated by males, and females terminated fewer first copulations than subsequent ones on the same day. These findings indicate that females were motivated to copulate less frequently and for shorter durations than their mates. The sperm competition hypothesis predicts that females reject their mates to increase the probability of being fertilized by extra-pair males. This hypothesis was not supported because females rejected extra-pair males similarly to their mates. The female-mate-guarding hypothesis predicts that females guard their pair bond by copulating frequently with their mates, thereby depriving the males of time and energy to copulate with and form bonds with other females. This prediction was consistent with a significant negative correlation between the percentage of copulation attempts that females accepted from their mates, and the number of extra-pair copulations that their mates attempted. However, this correlation was not caused by a trade-off of males copulating with their mates instead of attempting extra-pair copulation because males attempted most extra-pair copulations on days when their mates were absent. A new hypothesis is proposed, namely, that females reject their mates to test the male's commitment to provide essential parental contributions after egg-laying. The ‘testing-of-the-bond’ hypothesis is consistent with the findings but requires testing.     

Sexual selection has minimal impact on effective population sizes in species with high rates of random offspring mortality: An empirical demonstration using fitness distributions

The effective population size (N_e) is a fundamental parameter in population genetics that influences the rate of loss of genetic diversity. Sexual selection has the potential to reduce N_e by causing the sex‐specific distributions of individuals that successfully reproduce to diverge. To empirically estimate the effect of sexual selection on N_e, we obtained fitness distributions for males and females from an outbred, laboratory‐adapted population of Drosophila melanogaster. We observed strong sexual selection in this population (the variance in male reproductive success was ～14 times higher than that for females), but found that sexual selection had only a modest effect on N_e, which was 75% of the census size. This occurs because the substantial random offspring mortality in this population diminishes the effects of sexual selection on N_e, a result that necessarily applies to other high fecundity species. The inclusion of this random offspring mortality creates a scaling effect that reduces the variance/mean ratios for male and female reproductive success and causes them to converge. Our results demonstrate that measuring reproductive success without considering offspring mortality can underestimate N_e and overestimate the genetic consequences of sexual selection. Similarly, comparing genetic diversity among different genomic components may fail to detect strong sexual selection.     

Female lesser kestrel ( falco naumanni ) also accepts extra-pair copulation

The lesser kestrel (Falco naumanni) is considered a socially monogamous species in which extra-pair copulation occurs at a low rate. A wide study of extra-pair mating behaviour carried out on this species found that mated females do not solicit extra-pair copulation and reject all copulation attempts elicited by extra-pair males. In fact, the infrequent instances of extra-pair fertilization found were attributed either to re-mating after divorce, or polygyny. Here I describe an observation indicating that females also promote and accept promiscuous mating, attaining and consummating extra-pair copulation. I suggest the possibility that promiscuous behaviour could vary among different populations in this species, as it has not yet been reported, in spite of the extensive work performed in this respect.     

Sperm Competition and Copulation Intervals of the White Spoonbill (Platalea leucorodia,Aves, Threskiornithidae)

Some aspects of sperm competition were studied in the white spoonbill (Platalea leucorodia) breeding in Doñana National Park (SW Spain). Shorter pair copulation intervals occurred during the prelaying period, when females were subjected to a relatively high frequency of extra-pair copulations. Pair copulation intervals with an intermediate extra-pair copulation by the male mate were longer than those without extra-pair copulation. This result indicates that males need a time of recovery between copulations before they can perform another. Extra-pair copulations by the females did not affect the length of intervals between pair copulations. There were no differences between the lengths of the intervals between an extra-pair copulation by the female and the following pair copulation for cases in which the male mate detected an intruder male attempting copulation with his mate and those in which the intruder remained undetected. However, the correlations obtained between copulatory intervals for detected and undetected cases suggest a copulatory response by their mates, although affected by the required recovery time between copulations by the males. Finally, since extra-pair copulations mainly occurred while male mates were collecting nest material, they engaged in this activity shortly after pair copulations, probably to avoid a last-male advantage under the sperm competition pressure.     

Polygynandry,face-to-face copulation and sperm competition in the Hihi Notiomystis cincta (Aves: Meliphagidae)

The Hihi or Stitchbird Notiomystis cincta breeding system is highly variable and includes monogamy, polyandry, polygyny and polygynandry. Males have large testes (4.2% of body mass), very large numbers (1460 × 10⁶) of sperm in their seminal glomera and an unusually enlarged cloacal protuberance. These features are also found in other species with highly variable mating systems where males are under intense sperm competition. Hihi copulate in two different positions: face to face and, more conventionally, with the male on the female's back. Face-to-face copulation is unique among birds and appears to be a form of forced copulation. The presence of enlarged cloacas in both sexes could aid the transfer of sperm. Both male and female Hihi appear to benefit from a mixed reproductive strategy where a female Hihi can solicit copulations from males other than her partner and male Hihi can perform extra-pair copulations both with willing females or by forced copulation.     

Extra-pair paternity in relation to regional and local climate in an Arctic-breeding passerine

Reproductive processes are affected by local and regional climate variation. Birds breeding in the Arctic may experience strong energetic constraints, which will affect their reproductive output. Recent research has emphasized the importance of extra-pair copulation as a means of improving reproductive output. In this paper, we explore ecological and climatic determinants that may explain variation in extra-pair paternity (EPP) in an arctic-breeding passerine, the snow bunting Plectrophenax nivalis. EPP occurred in 10.8 % of the young and 20.9 % of the broods sampled from 1999 to 2003. We found that the proportion of extra-pair young in a nest was positively related to the body size and age of the social male and weakly negatively related to the local average minimum temperature prior to the onset of egg laying. These results suggest that older and larger males lost a larger share of paternity than smaller and younger males, and that the relative loss of paternity decreased with cold weather during the female’s fertile period. Large and old males spend less time mate guarding compared to small and young males and may allocate more time towards extra-pair forays, and thus lose more paternity in their own nest. Climatic conditions most likely constrain the total energy budget with less energy available for extra-pair activity in cold weather.     

Simple method for calculating confidence limits around inbreeding rate and effective population size estimates from pedigrees

An important concept in population genetics is effective population size (N_e), which describes the expected rate of loss of genetic variability from a population. One way to estimate N_e is using a pedigree. However, there are no methods for comparing the N_e estimated from a pedigree with that expected from life-history models. In the paper we show how N_e can be estimated from the change in inbreeding rate (f) estimated from a pedigree. The mean individual inbreeding rate in a population at a given time must be calculated from averaged values for males and females, where each age class is weighted by its reproductive value. We show an exact method for placing confidence intervals around f and N_e using a binomial distribution, and present a method for approximating this interval for large N_es using a Poisson distribution. These confidence intervals can be used to compare f and N_e from a pedigree to expected values from demographic models, and to compare N_es of two populations.     

Puny males punch above their weight to preserve genetic diversity in a declining Atlantic salmon population

Many salmonid fish populations have anadromous (i.e. migratory) and nonanadromous individuals co‐existing in sympatry. The nonanadromous individuals, frequently males, mature at a much smaller size in freshwater without undergoing marine migrations and often successfully fertilize many eggs laid by anadromous females. Because these small males do not recruit to fisheries, they are often not regarded in high esteem by fishers. In this issue of Molecular Ecology, Johnstone et al. ( 2013 ) demonstrate that by substantially contributing to reproduction, such males help maintain genetic diversity in a declining population of Atlantic salmon (Salmo salar). Their results show that estimates of effective population size (N_e), obtained by counting the number of anadromous adults returning from sea and correcting for unequal sex ratios, are lower than estimates generated from genetic markers. Many mechanisms are expected to reduce N_e below the adult census population size (N); the opposite pattern of N_e > N observed by Johnstone et al. ( 2013 ) is difficult to explain unless the reproductive effort of nonanadromous males is accounted for. The results have important implications for the conservation of small populations and highlight the challenges of relating N_e to N in organisms with complex life histories.     

ESTIMATION OF PARAMETERS OF INBREEDING AND GENETIC DRIFT IN POPULATIONS WITH OVERLAPPING GENERATIONS

Many long‐lived plant and animal species have nondiscrete overlapping generations. Although numerous models have been developed to predict the effective sizes (N_e) of populations with overlapping generations, they are extremely difficult to apply to natural populations because of the large array of unknown and elusive life‐table parameters involved. Unfortunately, little work has been done to estimate the N_e of populations with overlapping generations from marker data, in sharp contrast to the situation of populations with discrete generations for which quite a few estimators are available. In this study, we propose an estimator (EPA, estimator by parentage assignments) of the current N_e of populations with overlapping generations, using the sex, age, and multilocus genotype information of a single sample of individuals taken at random from the population. Simulations show that EPA provides unbiased and accurate estimates of N_e under realistic sampling and genotyping effort. Additionally, it yields estimates of other interesting parameters such as generation interval, the variances and covariances of lifetime family size, effective number of breeders of each age class, and life‐table variables. Data from wild populations of baboons and hihi (stitchbird) were analyzed by EPA to demonstrate the use of the estimator in practical sampling and genotyping situations.     

Sweepstakes reproductive success is absent in a New Zealand snapper (Chrysophrus auratus) population protected from fishing despite “tiny” Ne/N ratios elsewhere

A landmark study published in 2002 estimated a very small N_e/N ratio (around 10^–5) in a population of pink snapper (Chrysophrys auratus, Forster, 1801) in the Hauraki Gulf in New Zealand. It epitomized the tiny N_e/N ratios (<10^–3) reported in marine species due to the hypothesized operation of sweepstakes reproductive success (SRS). Here we re‐evaluate the occurrence of SRS in marine species and the potential effect of fishing on the N_e/N ratio by studying the same species in the same region, but in a population that has been protected from fishing since 1975. We combine empirical, simulation and model‐based approaches to estimate N_e (and N_b) from genotypes of 1,044 adult fish and estimate N using recapture‐probabilities. The estimated N_e/N ratio was much larger (0.33, SE: 0.14) than expected. The magnitude of estimates of population‐wide variance in individual lifetime reproductive success (10–18) suggested that the sweepstakes effect was negligible in the study population. After evaluating factors that could explain the contrast between studies – experimental design, life history differences, environmental effects and the influence of exploitation on the N_e/N ratio – we conclude that the low N_e of the Hauraki Gulf population is associated with demographic instability in the harvested compared to the protected population despite circumstantial evidence that the 2002 study may have underestimated N_e. This study has broad implications for the prevailing view that reproductive success in the sea is largely driven by chance, and for genetic monitoring of populations using the N_e/N ratio and N_b.     

Reconciling Genetic and Demographic Estimators of Effective Population Size in the Anuran Amphibian Bufo Calamita

We used genetic and demographic methods to estimate the variance effective population sizes (N _e) of three populations of natterjack toads Bufo calamita in Britain. This amphibian breeds in temporary pools where survival rates can vary among families. Census population sizes (N) were derived from spawn string counts. Point and coalescent-based maximum likelihood estimates of N _e based on microsatellite allele distributions were similar. N _e/N ratios based on genetic estimates of N _e ranged between 0.02 and 0.20. Mean demographic estimates of N _e were consistently higher (2.7–8.0-fold) than genetic estimates for all three populations when variance in breeding success was evaluated at the point where females no longer influence their progeny. However, discrepancies between genetic and demographic estimators could be removed by using a model that included extra variance in survivorship (above to Poisson expectations) among families. The implications of these results for the estimation of N _e in wild populations are discussed.     

Decomposing demographic contributions to the effective population size with moose as a case study

Levels of random genetic drift are influenced by demographic factors, such as mating system, sex ratio and age structure. The effective population size (N_e) is a useful measure for quantifying genetic drift. Evaluating relative contributions of different demographic factors to N_e is therefore important to identify what makes a population vulnerable to loss of genetic variation. Until recently, models for estimating N_e have required many simplifying assumptions, making them unsuitable for this task. Here, using data from a small, harvested moose population, we demonstrate the use of a stochastic demographic framework allowing for fluctuations in both population size and age distribution to estimate and decompose the total demographic variance and hence the ratio of effective to total population size (N_e/N) into components originating from sex, age, survival and reproduction. We not only show which components contribute most to N_e/N currently, but also which components have the greatest potential for changing N_e/N. In this relatively long‐lived polygynous system we show that N_e/N is most sensitive to the demographic variance of older males, and that both reproductive autocorrelations (i.e., a tendency for the same individuals to be successful several years in a row) and covariance between survival and reproduction contribute to decreasing N_e/N (increasing genetic drift). These conditions are common in nature and can be caused by common hunting strategies. Thus, the framework presented here has great potential to increase our understanding of the demographic processes that contribute to genetic drift and viability of populations, and to inform management decisions.     

Interannual variation in effective number of breeders and estimation of effective population size in long‐lived iteroparous lake sturgeon (Acipenser fulvescens)

Quantifying interannual variation in effective adult breeding number (N_b) and relationships between N_b, effective population size (N_e), adult census size (N) and population demographic characteristics are important to predict genetic changes in populations of conservation concern. Such relationships are rarely available for long‐lived iteroparous species like lake sturgeon (Acipenser fulvescens). We estimated annual N_b and generational N_e using genotypes from 12 microsatellite loci for lake sturgeon adults (n = 796) captured during ten spawning seasons and offspring (n = 3925) collected during larval dispersal in a closed population over 8 years. Inbreeding and variance N_b estimated using mean and variance in individual reproductive success derived from genetically identified parentage and using linkage disequilibrium (LD) were similar within and among years (interannual range of N_b across estimators: 41–205). Variance in reproductive success and unequal sex ratios reduced N_b relative to N on average 36.8% and 16.3%, respectively. Interannual variation in N_b/N ratios (0.27–0.86) resulted from stable N and low standardized variance in reproductive success due to high proportions of adults breeding and the species' polygamous mating system, despite a 40‐fold difference in annual larval production across years (437–16 417). Results indicated environmental conditions and features of the species' reproductive ecology interact to affect demographic parameters and N_b/N. Estimates of N_e based on three single‐sample estimators, including LD, approximate Bayesian computation and sibship assignment, were similar to annual estimates of N_b. Findings have important implications concerning applications of genetic monitoring in conservation planning for lake sturgeon and other species with similar life histories and mating systems.     

Low effective population size and survivorship in a grassland grouse

Assessments of census size (N _c) and effective population size (N _e) are necessary for the conservation of species exhibiting population declines. We examined two populations (Oklahoma and New Mexico) of the lesser prairie-chicken (Tympanuchus pallidicinctus), a declining lek-breeding bird, in which one population (Oklahoma) has larger clutch size and more nesting attempts per year but lower survival caused by human changes to the landscape. We estimated demographic and genetic estimates of N _e for each population and found that both populations have low N _e estimates with a risk of inbreeding depression. Although Oklahoma females produce a larger number of offspring, the proportion of females successfully reproducing is not higher than in New Mexico. Higher reproductive effort has likely reached a physiological limit in Oklahoma prairie-chickens but has not led to a higher N _e or even a larger N _c than New Mexico. We propose that future conservation efforts focus on maximizing survivorship and decreasing the variance in reproductive success because these factors are more likely than increasing reproductive output alone to yield population persistence in lek-breeding species.     

INTERMITTENT BREEDING AND CONSTRAINTS ON LITTER SIZE: CONSEQUENCES FOR EFFECTIVE POPULATION SIZE PER GENERATION (Ne) AND PER REPRODUCTIVE CYCLE (Nb)

In iteroparous species, it is easier to estimate N_b (effective number of breeders in one reproductive cycle) than N_e (effective population size per generation). N_b can be used as a proxy for N_e and also can provide crucial insights into eco‐evolutionary processes that occur during reproduction. We used analytical and numerical methods to evaluate effects of intermittent breeding and litter/clutch size on inbreeding N_b and N_e. Fixed or random litter sizes ≥ 3 have little effect on either effective‐size parameter; however, in species (e.g., many large mammals) in which females can produce only one offspring per cycle, female N_b = ∞ and overall N_b = 4N_b(male). Intermittent breeding reduces the pool of female breeders, which reduces both female and overall N_b; reductions are larger in high‐fecundity species with high juvenile mortality and increase when multiple reproductive cycles are skipped. Simulated data for six model species showed that both intermittent breeding and litter‐size constraints increase N_e, but only slightly. We show how to quantitatively account for these effects, which are important to consider when (1) using N_b to estimate N_e, or (2) drawing inferences about male reproductive success based on estimates of female N_b.     

Do Female Red-winged Blackbirds Engage in a Mixed Mating Strategy?

Parentage analyses of broods of nestling red-winged blackbirds (Agelaius phoeniceus) revealed that extra-pair fertilizations (EPFs) accounted for 24% of the offspring. 8% of attempted copulations and 13% of male courtship displays during observations of focal females were by extra-pair males. In addition, mates and non-mates often chased and occasionally made physical contact with females; 34% of those chases in which contact was made were extra-pair chases. Females behaved variably during both within-pair and extra-pair events; females crouched less and resisted more frequently during extra-pair courtship than during within-pair courtship. All extra-pair events, whether natural or induced by male removal, were either resisted or accepted by the female. In 318 focal female-hours of observation during the fertilizable period, no female was ever seen in another male's territory soliciting a copulation. In addition, removal of females' mates resulted in frequent extra-pair courtship and copulation; all of these occurred on the removed male's territory. Some females left their mates' territories on occasion — these forays were nearly always off the study area, no female was ever seen copulating with an extra-pair male while on these forays, and neither the frequency nor the duration of female forays correlated with the frequency of extra-pair fertilizations within broods. There were no associations between extra-pair fertilizations and female age, settlement order, nest order, or clutch size. The number of fledglings produced from a nest was significantly positively associated with the number of sires of the brood. Fewer offspring apparently starved in broods that were multiply sired, yet males did not provide courtship feedings during either within-pair or extra-pair copulations, nor was any paternal care provided to young sired through extra-pair matings. The frequency of infertile eggs was low (< 1%); in those instances of infertile eggs the territory owner sired some young in the same nest or another nest on his territory. Fewer broods were a mixture of within-pair and extra-pair paternity than expected by chance. Clear evidence implicating a mixed strategy on the part of females could not be gathered. Because females behaved variably and because not all costs and benefits to females of extra-pair copulations could be measured, it remains possible that female behavior patterns are either (1) part of a mixed strategy, or (2) part of a strategy minimizing the costs of copulation.     

Inbreeding and extinction: Effects of rate of inbreeding

Deleterious alleles may be removed (purged) bynatural selection in populations undergoinginbreeding. However, there is controversyregarding the effectiveness of selection inreducing the risk of extinction due toinbreeding, especially in relation to the rateof inbreeding. We evaluated the effect of therate of inbreeding on reducing extinction risk,in populations of Drosophila melanogastermaintained using full-sib mating (160replicates), or at effective population sizes(N _e) of 10 (80) or 20 (80).Extinction rates in the populations maintainedusing full-sib mating occurred at lower levelsof inbreeding than in the larger populations,whereas the two larger populations did notdiffer significantly from each other.Inbreeding coefficients at 50% extinction were0.62, 0.79 and 0.77 for the full-sib (N _e = 2.6), N _e = 10 and N _e = 20 treatments, respectively. Populations of N _e = 20 that remained extant after 60 generations, showed inbreeding depression, with the mean fitness of these populations being only 45% of the outbredcontrols. There was considerable variationamong the 31 inbred populations in fitness, butnone of the N _e = 20 populations hadfitness that was higher than the outbredcontrol. We conclude that purging may slow therate of extinction slightly, but it cannot berelied on to eliminate the deleterious effectsof inbreeding.