Bird species of black water inundation forests in the Jaú National Park (Amazonas state, Brazil): their contribution to regional species richness

We compared the relative contribution of blackwater inundation forest (igapó) and unflooded (terra firme) forest for regional bird species diversity in the lower Rio Negro region. For analyses of habitat preference we used mist-net samples and an unpublished bird species check-list. The igapó forest had lower bird species diversity than the terra firme forest. However, some 14% of the forest bird species in the region are restricted to igapó forest. Species composition was found to be distinct between the understories of the two forest types. Common forest bird guilds in the Neotropics such as ant-following birds avoid igapó forest. The differential habitat selection among birds in the inundated and unflooded forest is likely to result from vegetation structure and biological interactions such as aggressive behaviour. Since the inundated forest has a typical biota, conservation efforts needs to be directed to protect these habitats. Unfortunately, inundation forests are threatened by several human actions, especially dam construction. The extent of protected areas in the Brazilian Amazon is insufficient for the adequate protection of the inundated habitats, because it includes only 3% of the total area.     

Use of Terra Firme Forest by Caicubi Caboclos,Middle Rio Negro,Amazonas, Brazil. A Quantitative Study

Use of Terra Firme Forest by Caicubi Caboclos, Middle Rio Negro, Amazonas, Brazil. A Quantitative Study. An ethnobotanical study was carried out with caboclos from the village of Caicubi, Roraima State, Brazil. This village is located between the Rio Negro and Rio Branco. The data were collected in 1 ha of terra firme forest and involved caboclo knowledge of the tree species with individuals dbh ≥ 10 cm. A total of 11 informants between 34 to 74 years of age were interviewed. The caboclos used 185 (98%) of the 189 species analyzed. The family with the highest use value for the community was Arecaceae. The species with the highest use value was Bertholletia excelsa. Arecaceae, Lecythidaceae, and Sapotaceae showed a wide variety of uses. The uses were grouped into eight categories; those with the highest use values were firewood, technology, and construction. The mean use value for species was 1.6. The most intensely used resources in the forest were wood, leaves, spines, and exudates.     

Contrasting patterns of genetic structure in Caryocar (Caryocaraceae) congeners from flooded and upland Amazonian forests

In the present study, we compare the genetic structure of a flooded forest tree Caryocar microcarpum and a terra firme forest tree Caryocar villosum in the lower Rio Negro region and test the hypothesis that the Rio Negro, the largest tributary on the left bank of the Amazon River, has been acting as a geographical barrier to gene flow between populations from the left and right banks. Seventeen adult individuals on the left bank and 27 on the right bank of Rio Negro were sampled for C. microcarpum, whereas 27 on the left and 20 on the right bank were sampled for C. villosum. Two chloroplast DNA regions were sequenced: the intron of trnL gene and the intergenic region between psbA and trnH genes; and all individuals were genotyped using ten microsatellite loci. The trnL intron and psbA‐trnH intergenic spacer generated fragments of 459 bp and 424 bp, respectively. For C. microcarpum, six haplotypes were identified for trnL and seven for psbA‐trnH. By contrast, only one haplotype was found for C. villosum for both sequences. The results obtained showed that the Rio Negro has not been a barrier to gene flow by pollen and seeds for either species. No genetic differentiation and a high migration rate between populations from the left and right banks of the Rio Negro were detected for the chloroplast sequences and nuclear microsatellites, for both C. villosum and C. microcarpum. Although the two analysed sequences showed a sharp topology difference, both indicated that multiple lineages may have contributed to the origin of C. microcarpum populations in the Rio Negro basin. Nevertheless, for C. villosum, from terra firme, the results obtained may provide evidence of a recent expansion of one maternal lineage from an ancient relic population surviving in one of the few moist forest refuges of the Guiana Shield during extended droughts of the glacial periods. We hypothesize that the contrasting environments colonized by this congener pair may have played an important role in shaping the genetic structure of both species. © 2009 The Linnean Society of London, Biological Journal of the Linnean Society, 2009, 98 , 278–290.     

Structure and Composition of One Hectare of Central Amazonian Terra Firme Forest1

The trees, vines, and stranglers ≥10 cm in diameter in 1 ha of terra firme forest in Amazonas State, Brazil, were measured and identified. The plot contained 645 trees representing 201 species, 95 genera, and 34 families (basal area ca 31 m²); 16 vines representing 14 species, 13 genera, and 8 families; and 1 strangler. The dominant families of trees present were the Leguminosae (sensu latu), Lecythidaceae, Sapotaceae, Burseraceae, and Moraceae; the dominant species were Clathrotropis macrocarpa (Leguminosae), Eschweilera coriacea (Lecythidaceae), and Protium hebetatum (Burseraceae). In terms of structure, diversity, and floristic composition, this plot is reasonably typical of the terra firme forests in the central Amazon, as far as this diverse biota can be typified.     

Life history traits of shrimps (Decapoda: Palaemonidae) of Amazonian inland waters and their Phylogenetic interpretation

Amazonian shrimps (Decapoda, Palaemonidae) of several genera from the generally nutrient‐poor, acid waters of the Rio Negro basin show two different breeding patterns: in the annually inundated (Jan./Feb. to Sept./Oct.) lowland forest (= “igapó") they breed during a period with rising and high water levels only (Dec. to July); in the headwater streams draining the “terra firme”; (= regions not subject to annual inundations), the same species breed continuously the year round. All species from these nutrient‐poor and hence, plankton‐deficient, waters have abreviated life cycles with 1–3 benthic larval stages; this includes several Macrobrachium species. However, Macrobrachium amazonicum from the plankton‐rich floodplain lakes, which are fed by the richer water of the Amazon river, maintains the marine pattern of development with numerous stages of filter‐feeding, planktonic larvae. Phylogenetic convergence (several genera developing independently the same adaptive pattern) and divergence (the same genus/species exhibiting different patterns in different environments) are discussed in relation to recent, general molecular genetics.     

Quantitative ecological inventory of terra firme and várzea tropical forest on the Rio Xingu,Brazilian Amazon

Three hectares of Amazonian terra firme forest and an adjacent one-half hectare of várzea forest were quantitatively inventoried at O Deserto, on the Rio Xingu, Pará, Brazil. In the terra firme forest, 1420 individual trees greater than ten cm dbh, in 39 families and 265 species, were inventoried. In the várzea forest, there were 220 individual trees, in 17 families and 40 species.Cenostigma macrophyllum andOrbignya sp. were the most important species in the terra firme forest;Mollia lepidota andLeonia glycycarpa were most important in the várzea forest. Among one-hectare subplots of the total three-hectare terra firme sample, the number of trees ranged from 393 to 460, the number of families was a constant 33, and the number of species ranged from 118 to 162. This variation indicates that one-hectare samples are too small to be used to estimate the species richness of the total forest. The terra firme forest was richer in species and had a greater stature than the várzea forest.     

Bird assemblages on Amazonian river islands: Patterns of species diversity and composition

The principles of island biogeography are rarely applied to the animal assemblages of Amazonian river islands. Here, we compare bird assemblages of Amazonian river islands with a variety of mainland habitats. We also examine how bird species diversity and composition are related to island physical attributes. Birds were sampled with mist nets and qualitative censuses on 11 river islands and 24 mainland sites on the lower reaches of the Rio Negro in the Brazilian Amazon. Island bird assemblages were characterized by lower species richness and a higher abundance of a few dominant species. Additionally, the species composition of the islands was distinct from that of the mainland, including the nearby floodplain habitats. The number of bird species increased with island size and habitat diversity, and decreased with degree of isolation. In addition, small islands tended to harbor an impoverished subset of the species present on larger ones. Bird species diversity and composition on Amazonian river islands are likely influenced by the ecological succession and historical events affecting island formation. Considering their small total area across the Amazon basin, these insular fluvial communities could be disproportionately threatened by river channel disturbances related to climate change or hydroelectric dam development. Abstract in Portughese is available with online material.     

Litter decomposing and ectomycorrhizalBasidiomycetes in an igapó forest

An igapó forest near the confluence of Rio Tarumã Mirim (Tarumãzinho) and Rio Negro has been studied. It is a typical ectotroph forest with a raw humus layer and suppressed litter decomposing activity by Higher (i.e., carpophore-producing) Fungi. The number of the latter is about one-fifth of that observed in the (anectotrophic) terra firme forest. All ectotrophically mycorrhizal fungi observed belonged in three families:Amanitaceae, Boletaceae, Russulaceae. Leguminosae are dominant, and of theseAldina latifolia andSwartzia cf.polyphylla were demonstrably ectomycorrhizal. The scarcity of mineral nutrients in the soils of igapó, campinarana and campina is overcome by direct cycling through ectomycorrhizae. This is in contrast to other black- and white-water inundated forest communities in Amazonia.Litter Decomposition and Ectomycorrhiza in Amazonian Forests3. Previous contributions seeSinger & Araujo (1979) andSinger & al. (1983).     

Habitat Selection and Use of Space by Bald-Faced Sakis (Pithecia irrorata) in Southwestern Amazonia: Lessons from a Multiyear, Multigroup Study

Population density and distribution in tropical forest vertebrates are directly linked to patterns of use of space relative to habitat structure and composition. To examine how forest type may explain the ranging behavior and high variance in group density observed within the geographic range of bald-faced saki monkeys (Pithecia irrorata), we monitored habitat use of 5 neighboring focal groups of this species in southwestern Amazonia over 3 yr. To test whether sakis are unflooded (terra firme) forest specialists, we compared home range (HR) use to the corresponding availability of 4 main forest types and quantified HR size and activity budgets as a function of forest type. HR size varied from 16 to 60 ha, and saki population density at this scale (12.5 ± 6.4 SD individuals/km²) was more closely related to forest type than to group size. Although sakis were not obligate habitat specialists, groups clearly avoided bamboo forest and preferred terra firme forest. Terra firme forests were associated with small HRs, intensive use, high HR overlap, and territorial defense, all of which suggest that saki densities will be higher in areas dominated by terra firme forest where large patches of bamboo (Guadua spp.) are absent. The increased desiccation and subsequent forest fires expected in this region from the combined impacts of climate change and human land use potentially threaten the long-term viability of old-growth terra firme forest specialists such as sakis. Regional-scale conservation efforts should ensure that extensive blocks of terra firme forest are protected in areas that remain relatively free of bamboo.     

Peruvian Red Uakaris (<Emphasis Type="Italic">Cacajao calvus ucayalii</Emphasis>) Are Not Flooded-Forest Specialists

In the literature, particularly in primatological books, the Peruvian red uakari (Cacajao calvus ucayalii) is generally considered as a species that is specialized on living in flooded forest, despite existing evidence to the contrary. Here we review all available information on habitats where Cacajao calvus ucayalii have been observed. Most sightings are from terra firme, including palm swamps, or from mixed habitats, including terra firme and flooded forest. Therefore, we conclude that the species is not a flooded-forest specialist, but is flexible in its habitat requirements and generally uses terra firme forests or a mixture of habitats. Proper recognition of habitat requirements is important for understanding the ecoethological adaptations of a species and for appropriate conservation measures.     

Wide but not impermeable: Testing the riverine barrier hypothesis for an Amazonian plant species

Wallace's riverine barrier hypothesis postulates that large rivers, such as the Amazon and its tributaries, reduce or prevent gene flow between populations on opposite banks, leading to allopatry and areas of species endemism occupying interfluvial regions. Several studies have shown that two major tributaries, Rio Branco and Rio Negro, are important barriers to gene flow for birds, amphibians and primates. No botanical studies have considered the potential role of the Rio Branco as a barrier, while a single botanical study has evaluated the Rio Negro as a barrier. We studied an Amazon shrub, Amphirrhox longifolia (A. St.‐Hil.) Spreng (Violaceae), as a model to test the riverine barrier hypothesis. Twenty‐six populations of A. longifolia were sampled on both banks of the Rio Branco and Rio Negro in the core Amazon Basin. Double‐digest RADseq was used to identify 8,010 unlinked SNP markers from the nuclear genome of 156 individuals. Data relating to population structure support the hypothesis that the Rio Negro acted as a significant genetic barrier for A. longifolia. On the other hand, no genetic differentiation was detected among populations spanning the narrower Rio Branco, which is a tributary of the Rio Negro. This study shows that the strength of riverine barriers for Amazon plants is dependent on the width of the river separating populations and species‐specific dispersal traits. Future studies of plants with contrasting life history traits will further improve our understanding of the landscape genetics and allopatric speciation history of Amazon plant diversity.     

Tree species composition and diversity gradients in white-water forests across the Amazon Basin

Aim Attention has increasingly been focused on the floristic variation within forests of the Amazon Basin. Variations in species composition and diversity are poorly understood, especially in Amazonian floodplain forests. We investigated tree species composition, richness and α diversity in the Amazonian white‐water (várzea) forest, looking particularly at: (1) the flood‐level gradient, (2) the successional stage (stand age), and (3) the geographical location of the forests. Location Eastern Amazonia, central Amazonia, equatorial western Amazonia and the southern part of western Amazonia. Methods The data originate from 16 permanent várzea forest plots in the central and western Brazilian Amazon and in the northern Bolivian Amazon. In addition, revised species lists of 28 várzea forest inventories from across the Amazon Basin were used. Most important families and species were determined using importance values. Floristic similarity between plots was calculated to detect similarity variations between forest types and over geographical distances. To check for spatial diversity gradients, α diversity (Fisher) of the plots was correlated with stand age, longitudinal and latitudinal plot location, and flood‐level gradient. Results More than 900 flood‐tolerant tree species were recorded, which indicates that Amazonian várzea forests are the most species‐rich floodplain forests worldwide. The most important plant families recorded also dominate most Neotropical upland forests, and c. 31% of the tree species listed also occur in the uplands. Species distribution and diversity varied: (1) on the flood‐level gradient, with a distinct separation between low‐várzea forests and high‐várzea forests, (2) in relation to natural forest succession, with species‐poor forests in early stages of succession and species‐rich forests in later stages, and (3) as a function of geographical distance between sites, indicating an increasing α diversity from eastern to western Amazonia, and simultaneously from the southern part of western Amazonia to equatorial western Amazonia. Main conclusions The east‐to‐west gradient of increasing species diversity in várzea forests reflects the diversity patterns also described for Amazonian terra firme. Despite the fine‐scale geomorphological heterogeneity of the floodplains, and despite high disturbance of the different forest types by sedimentation and erosion, várzea forests are dominated by a high proportion of generalistic, widely distributed tree species. In contrast to high‐várzea forests, where floristic dissimilarity increases significantly with increasing distance between the sites, low‐várzea forests can exhibit high floristic similarity over large geographical distances. The high várzea may be an important transitional zone for lateral immigration of terra firme species to the floodplains, thus contributing to comparatively high species richness. However, long‐distance dispersal of many low‐várzea trees contributes to comparatively low species richness in highly flooded low várzea.     

Seasonal patterns of spatial variation in understory bird assemblages across a mosaic of flooded and unflooded Amazonian forests

We examined seasonal patterns of spatial variation in understory bird assemblages across a mosaic of upland and floodplain forests in central Amazonia, where variation in flooding patterns and floodwater nutrient load shapes a marked spatial heterogeneity in forest structure and composition. Despite great differences in productivity due to flooding by either nutrient-rich “white waters” (várzea) or nutrient-poor “black waters” (igapó), bird assemblages in the two floodplain forest types were relatively similar, showing lower abundances than adjacent upland forests (terra firme) and sharing a set of species that were absent or scarce elsewhere. Species that breed in pensile nests overhanging water were abundant in floodplain forests, whereas species that feed on the ground were generally scarce. Flooding affected assemblage dynamics in floodplain forests, with some influx of ground-dwelling species such as ant-following birds from adjacent upland during the low-water season, and the occupation by riverine and aquatic species such as kingfishers during floods. Spatial configuration influenced the seasonal pattern of assemblage structuring, with movements from terra firme occurring primarily to adjacent igapó forests. No such influx was detected in várzea forests that were farther from terra firme and isolated by wide river channels. Results support the view that habitat heterogeneity created by flooding strongly contributes to maintain diverse vertebrate assemblages in Amazonia forest landscapes, even in the case of largely sedentary species such as understory forest birds. Including both upland and floodplain forests in Amazonia reserves may thus be essential to preserve bird diversity at the landscape scale.     

A new species of <Emphasis Type="Italic">Besleria</Emphasis> (Gesneriaceae) from the western Amazon rainforest

Besleria iara, a new species from the western Amazon lowland rainforest in Brazil and Peru, is described and illustrated. Data are provided on the species’ ecology, distribution, and conservation status. This species is a shrub, with hirsute indumentum covering almost the whole plant, orange calyx, and yellow tubular-ventricose corolla. It was found growing in the understory of humid terra firme forest, along the margin of small streams.     

The role of forest structure and human occupation in structuring mammal assemblages in oligotrophic ecosystems of Central Amazonia

Large mammals are vulnerable to extinction, and respond directly to ecological gradients within the forest and to the intensity of forest product use by humans. In this study, we evaluated the effects of differences in forest structure and human occupation history on the composition of medium and large‐sized mammal assemblages of the terra‐firme forests of the Anavilhanas National Park, one of the most oligotrophic Amazonian ecosystems. Mammal surveys were conducted along 11 linear transects of 4 km, six of which were located in areas once inhabited by people and managed until the year that the park was created (over 30 years ago), and five in areas that were not inhabited at that time. We detected 469 individuals of 26 species during diurnal and nocturnal sampling, and 11 additional species outside transects. Human occupation history was strongly related to forest structure components. Fruit biomass, canopy cover and tree size were strongly associated with uninhabited areas, and influenced the structure of mammal assemblages. A direct relationship between diet category and species size was observed. Large frugivore‐herbivores and carnivores were more closely associated with areas with more fruit, larger trees and greater canopy cover. In contrast, small arboreal frugivore‐omnivores associated more closely with open canopy and smaller trees. Our study indicated that the effects of human occupation history on forest structure are still evident three decades after the removal of local people from the park. This long‐term effect can be explained by the low resilience of the Anavilhanas environments, demonstrating the fragility of mammal assemblages in face of anthropogenic variation in forest structure in the oligotrophic ecosystems of the Negro River basin.     

Using river color to predict Amazonian floodplain forest avifaunas in the world's largest blackwater river basin

Despite the importance of rivers in Amazonian biogeography, avian distribution patterns in river‐created habitats (i.e., floodplain forests) have been sparsely addressed. Here, we explore geographic variation in floodplain forest avifaunas, specifically regarding one of the most striking aspects of the Amazon: the diversity of river “colors” (i.e., types, based on the color of the water). We sampled the avifauna at 30 sites, located in 17 different rivers (nine black‐ and eight whitewater), in the Rio Negro basin, northwestern Brazil. Our sampling comprised ten 15‐min point‐counts per site, distributed every 500–1000 m along the river. We recorded a total of 352 bird species, many of which occurred in both river types. Although bird species richness was similar among rivers, we found significant differences in species composition. Nearly 14 percent of the species were significantly associated with one or the other river type. Most floodplain forest specialists occurred predominantly in whitewater rivers, whereas species that are typically associated with white‐sand habitats occurred in blackwater. Despite significant distinctions between river types, occurrence patterns and levels of habitat association differed among indicator species and may vary in the same species throughout its global distribution. There were also “intermediate” avifauna in some of our sites, suggesting that continuous parameters characterizing river types structure species turnover. The water color‐based classification of Amazonian rivers represents a simple and powerful predictor of the floodplain forest avifauna, offering a stimulating starting point for understanding patterns of floodplain bird distributions and for prioritizing conservation efforts in these overlooked habitats. Abstract in Portuguese is available with online material.     

Arbuscular mycorrhizal fungal communities along a pedo-hydrological gradient in a Central Amazonian terra firme forest

Little attention has been paid to plant mutualistic interactions in the Amazon rainforest, and the general pattern of occurrence and diversity of arbuscular mycorrhizal fungi (AMF) in these ecosystems is largely unknown. This study investigated AMF communities through their spores in soil in a ‘terra firme forest’ in Central Amazonia. The contribution played by abiotic factors and plant host species identity in regulating the composition, abundance and diversity of such communities along a topographic gradient with different soils and hydrology was also evaluated. Forty-one spore morphotypes were observed with species belonging to the genera Glomus and Acaulospora, representing 44 % of the total taxa. Soil texture and moisture, together with host identity, were predominant factors responsible for shaping AMF communities along the pedo-hydrological gradient. However, the variability within AMF communities was largely associated with shifts in the relative abundance of spores rather than changes in species composition, confirming that common AMF species are widely distributed in plant communities and all plants recruited into the forest are likely to be exposed to the dominant sporulating AMF species.     

Koellensteinia dasilvae sp. nov. (Zygopetalinae–Orchidaceae) from the Brazilian Amazon

A new species of Koellensteinia from the Brazilian Amazon is described and illustrated. Koellensteinia dasilvae C. F. Hall & F. Barros (Orchidaceae) grows as epiphyte or saxicolous, close to streams in upland forests (terra firme) of the state of Amapá, northern Brazil. The new species resembles K. hyacinthoides, sharing morphological affinities with this species, but differs by growing inside forests, smaller plant size, smaller leaves and petiole, larger inflorescence with large peduncle and small rachis, labellum, when spread, broader between the lateral lobes than at the mid‐lobe, margin of labellum minutely erose, and by short wings of the column.     

Vertebrate responses to fruit production in Amazonian flooded and unflooded forests

We document patterns of fruit and vertebrate abundance within an extensive, virtually undisturbed mosaic of seasonally flooded (várzea and igapó) and unflooded (terra firme) forests of central Amazonia. Using phenological surveys and a standardised series of line-transect censuses we investigate the spatial and temporal patterns of immature and mature fruit availability and how this may affect patterns of habitat use by vertebrates in the landscape. All habitats showed marked peaks in fruiting activity, and vertebrate detection rates varied over time for most species both within and between forest types. Many arboreal and terrestrial vertebrates used both types of flooded forest on a seasonal basis, and fluctuations in the abundance of terrestrial species in várzea forest were correlated with fruit availability. Similarly, the abundance of arboreal seed predators such as buffy saki monkeys (Pithecia albicans) and macaws (Ara spp.) were closely linked with immature fruit availability in terra firme forest. We conclude that highly heterogeneous landscapes consisting of terra firme, várzea and igapó forest appear to play an important role in the dynamics of many vertebrate species in lowland Amazonia, but the extent to which different forest types are used is highly variable in both space and time.     

Primate assemblage structure in Amazonian flooded and unflooded forests

There is considerable variation in primate species richness across neotropical forest sites, and the richest assemblages are found in western Amazonia. Forest type is an important determinant of the patterns of platyrrhine primate diversity, abundance, and biomass. Here we present data on the assemblage structure of primates in adjacent unflooded (terra firme) and seasonally inundated (várzea and igapó) forests in the lower Purús region of central-western Brazilian Amazonia. A line-transect census of 2,026 km in terra firme, 2,309 km in várzea, and 277 km in igapó was conducted. Twelve primate species were recorded from 2,059 primate group sightings. Although terra firme was found to be consistently more species-rich than várzea, the aggregate primate density in terra firme forest was considerably lower than that in the species-poor várzea. Consequently, the total biomass estimate was much higher in várzea compared to either terra firme or igapó forest. Brown capuchin monkeys (Cebus apella) were the most abundant species in terra firme, but were outnumbered by squirrel monkeys (Saimiri cf. ustus) in the várzea. The results suggest that floodplain forest is a crucial complement to terra firme in terms of primate conservation in Amazonian forests.