A Nisin Bioassay Based on Bioluminescence

A Lactococcus lactis subsp. lactis strain that can sense the bacteriocin nisin and transduce the signal into bioluminescence was constructed. By using this strain, a bioassay based on bioluminescence was developed for quantification of nisin, for detection of nisin in milk, and for identification of nisin-producing strains. As little as 0.0125 ng of nisin per ml was detected within 3 h by this bioluminescence assay. This detection limit was lower than in previously described methods.     

甲醇固定导致绿色荧光蛋白的荧光消失

发现用甲醇固定转染了绿色荧光蛋白(GFP)基因的细胞会导致GFP的荧光消失,而当用聚甲醛固定时,GFP的荧光就没有失去。因此建议避免用甲醇对有GFP表达的细胞进行免疫组化前的固定。     

Green Fluorescent Protein with Anionic Tryptophan-Based Chromophore and Long Fluorescence Lifetime

Spectral diversity of fluorescent proteins, crucial for multiparameter imaging, is based mainly on chemical diversity of their chromophores. Recently we have reported, to our knowledge, a new green fluorescent protein WasCFP—the first fluorescent protein with a tryptophan-based chromophore in the anionic state. However, only a small portion of WasCFP molecules exists in the anionic state at physiological conditions. In this study we report on an improved variant of WasCFP, named NowGFP, with the anionic form dominating at 37°C and neutral pH. It is 30% brighter than enhanced green fluorescent protein (EGFP) and exhibits a fluorescence lifetime of 5.1 ns. We demonstrated that signals of NowGFP and EGFP can be clearly distinguished by fluorescence lifetime in various models, including mammalian cells, mouse tumor xenograft, and Drosophila larvae. NowGFP thus provides an additional channel for multiparameter fluorescence lifetime imaging microscopy of green fluorescent proteins.     

高通量筛选雌激素类化合物重组绿色荧光蛋白酵母细胞测评体系

以载体双表达的方式构建重组酵母环境雌激素的评价体系, 用于快速筛选雌激素类化合物。在表达载体中, 用3-磷酸甘油醛脱氢酶(GPD)启动子驱动a人雌激素受体基因(hERa)的表达; 在报告载体中, 用雌激素效应元件(ERE)调控的绿色荧光蛋白(yEGFP)作为报告基因。将两者转化于酵母细胞(W303-1A)中, 构建成重组绿色荧光蛋白酵母细胞。该酵母细胞经不同浓度的雌激素类化合物作用后, 发现GFP的表达量与此类受试物具有明显的剂量效应关系。与其他环境雌激素酵母评价体系相比, 该重组酵母评价细胞, 在应用时不需要破坏细胞壁, 也不需要底物和相关试剂, 可直接在96孔板中操作完成, 具有快速、高通量、敏感性高、重现性好及廉价等特点。     

绿荧光蛋白(GFP)研究进展

ＧＦＰ作为一种全新的标记基因,在生物学的各研究领域得到了广泛的应用,本文概述了的近年来相关方面的研究进展和重要应用,以及尚存在的不足。     

绿色荧光蛋白在蛋白质研究中的应用

绿色荧光蛋白（green fluorescent protein,GFP）自发现以来,由于具有自发荧光等特性,在分子生物学和细胞生物学领域得到广泛应用。GFP作为一种报道分子,在研究蛋白质相互作用和构象变化、检测蛋白质表达、蛋白质和细胞荧光示踪中,起到了重要的作用。该文通过对绿色荧光蛋白特性的分析．介绍其作为荧光标记在蛋白质研究中的应用,并展望进一步的研究前景。     

Fluorescent Protein Based FRET Pairs with Improved Dynamic Range for Fluorescence Lifetime Measurements

Fluorescence Resonance Energy Transfer (FRET) using fluorescent protein variants is widely used to study biochemical processes in living cells. FRET detection by fluorescence lifetime measurements is the most direct and robust method to measure FRET. The traditional cyan-yellow fluorescent protein based FRET pairs are getting replaced by green-red fluorescent protein variants. The green-red pair enables excitation at a longer wavelength which reduces cellular autofluorescence and phototoxicity while monitoring FRET. Despite the advances in FRET based sensors, the low FRET efficiency and dynamic range still complicates their use in cell biology and high throughput screening. In this paper, we utilized the higher lifetime of NowGFP and screened red fluorescent protein variants to develop FRET pairs with high dynamic range and FRET efficiency. The FRET variations were analyzed by proteolytic activity and detected by steady-state and time-resolved measurements. Based on the results, NowGFP-tdTomato and NowGFP-mRuby2 have shown high potentials as FRET pairs with large fluorescence lifetime dynamic range. The in vitro measurements revealed that the NowGFP-tdTomato has the highest Förster radius for any fluorescent protein based FRET pairs yet used in biological studies. The developed FRET pairs will be useful for designing FRET based sensors and studies employing Fluorescence Lifetime Imaging Microscopy (FLIM).     

绿色荧光蛋白在生命科学研究中的应用

近年来,随着水母Ａｅｑｕｏｒｅａｖｉｃｔｏｒｉａ来源的绿色荧光蛋白（Ｇｒｅｅｎｆｌｕｏｒｅｓｃｅｎｔｐｒｏｔｅｉｎ,ＧＦＰ）在各种异源细胞,如细菌、霉菌、线虫、酵母、果蝇、昆虫细胞、哺乳动物细胞及植物细胞中的表达,ＧＦＰ作为一种新型的报告物在生物学界...     

绿色荧光蛋白(GFP)研究进展

源于多管水母属(Aequoria Victoria)等海洋无脊椎动物的绿色荧光蛋白(Green fluorescent protein,GFP)是一种极具潜力的标记物,该文对GFP的基础理论研究和应用研究进行了综述。     

绿色荧光蛋白及其应用

许多海洋无脊椎动物体内都含有绿色荧光蛋白,这种蛋白质结构很特殊,在受到激发时可以发射绿色或蓝色荧光。虽然对它的研究从本世纪六十年代才开始,但是它独特的性质逐渐引起了生物学界的广泛关注。本文将就绿色荧光蛋白的结构、性质及其应用前景作一综述。     

Variants of Green Fluorescent Protein GFPxm

As research progresses, fluorescent proteins useful for optical marking will evolve toward brighter, monomeric forms that are more diverse in color. We previously reported a new fluorescent protein from Aequorea macrodactyla, GFPxm, that exhibited many characteristics similar to wild-type green fluorescent protein (GFP). However, the application of GFPxm was limited because GFPxm expressed and produced fluorescence only at low temperatures. To improve the fluorescent properties of GFPxm, 12 variants were produced by site-directed mutagenesis and DNA shuffling. Seven of these mutants could produce strong fluorescence when expressed at 37°C. The relative fluorescence intensities of mutants GFPxm16, GFPxm18, and GFPxm19 were higher than that of EGFP (enhanced GFP) when the expression temperature was between 25 and 37°C, and mutants GFPxm16 and GFPxm163 could maintain a high fluorescence intensity even when expressed at 42°C. Meanwhile, at least 4 mutants could be successfully expressed in mammalian cell lines. The fluorescence spectra of 6 of the 12 mutants had a progressive red shift. The longest excitation-emission maximum was at 514/525 nm. In addition, 3 of the 12 mutants had two excitation peaks including an UV-excitation peak, while another mutant had only one UV-excitation peak.     

增强型绿色荧光蛋白的真核表达和纯化

根据编码增强型绿色荧光蛋白(enhanced green fluorescent protein,EGFP)的开放读码框(open reading frame,ORF)设计引物,PCR方法扩增出5'端带His标签的EGF PORF,利用杆状病毒表达系统构建表达EGFP基因的重组杆状病毒DNA分子,转染sf9细胞.取细胞...     

绿色荧光蛋白在转基因研究中的应用

绿色荧光蛋白(green fluorescent prote in,GFP)是一种能够自身催化形成生色团并在蓝光或紫外光激发下发出绿色荧光的蛋白。有现代生物学北斗星之美誉的它,在生物学的很多领域都有广泛应用。GFP具有荧光稳定、易于检测、表达调控简单、生物安全性好等优点,在转基因研究中的各个方面均应用颇多。就GFP在转基因研究中的应用特点及应用进展做一综述。     

Use of Green Fluorescent Protein in mouse embryos

Green Fluorescent Protein (GFP) has rapidly been established as a versatile and powerful cell marker in many organisms. Initial problems in using it in mammalian cells were solved by introducing mutations to increase its solubility at higher temperatures, such that GFP has now been used as a reporter in both gene expression and cell lineage studies, and to localize proteins within mammalian cells. GFP has two unique advantages: (i) the protein becomes fluorescent in an autocatalytic reaction, so that it can be introduced into any cell type simply as a cDNA or mRNA, or as protein; (ii) it is "bright" enough to be visualized in living cells under conditions that do not cause photodamage to the cells. In this article we outline the ways in which we have used GFP mRNA and cDNA in our studies of mouse cell lineages, and to characterize the behavior of proteins within the embryos.     

绿色荧光蛋白及其应用

随着对绿色荧光蛋白(green fluorescent protein,GFP)研究的不断深入,人们对其结构、荧光产生机理等已有较为全面的认识。近年来利用GFP及其它荧光蛋白(FPs)发展了诸如荧光互补技术(FC)、荧光共振能量转移技术(FRET)和超分辨成像(super-resolution imaging)等一系列新技术,极大地促进了生物学、医药科学的研究。主要介绍了荧光蛋白的结构,荧光产生的机理,不同类型的荧光蛋白和基于荧光蛋白产生的新技术等方面的最新研究进展。     

Green Fluorescent Protein Purification by Organic Extraction

Green fluorescent protein (GFP) is widely used as an excellent reporter molecule in biochemistry and cell biology. Some biochemical and immunological assays require high-purity GFP. However, the majority of current procedures for GFP purification include multiple time-consuming chromatography steps with a low yield of the desired product or require tag-containing proteins. An alternative method is described for the GFP purification without affinity extensions using organic extraction yielding a highly homogeneous protein indistinguishable in spectroscopic properties from that purified by previous methods.     

A Photostable Green Fluorescent Protein Variant for Analysis of Protein Localization in Candida albicans

Fusions to the green fluorescent protein (GFP) are an effective way to monitor protein localization. However, altered codon usage in Candida species has delayed implementation of new variants. Examination of three new GFP variants in Candida albicans showed that one has higher signal intensity and increased resistance to photobleaching.The human fungal pathogen Candida albicans can cause severe infections, particularly in immunocompromised patients. Important insights into its pathogenesis have been obtained by analyzing fusions to green fluorescent protein (GFP) (8). Although GFP tagging has been very successful, many fusion proteins are not easily detected. New GFP variants with improved fluorescence and protein folding properties have been identified by genetic approaches in other organisms (2, 7, 8). However, these GFP variants have not been assessed in C. albicans and related species, presumably because of the added difficulties of attempting heterologous expression in C. albicans.To adapt GFP for effective use in C. albicans, Cormack et al. introduced three types of codon changes: the S65G S72A mutations to enhance fluorescence; the CTG codon 201 change to TTG, since CUG is translated as Ser instead of Leu in C. albicans; and the optimization of the other codons for translation in C. albicans (1). This variant, known as YeGFP3, was introduced into convenient vectors for creating gene fusions in C. albicans (4). Another version of eGFP known as mut2 (S65A V68L S72A Q80R) was adapted for C. albicans by changing the CTG codon but without further codon optimization (5). These obstacles to heterologous expression in C. albicans have presumably delayed implementation of newer versions of GFP. Therefore, in this study three different GFP variants were introduced into YeGFP3 and examined for function in C. albicans.The GFP variants were constructed using standard methods to introduce changes in the coding sequence of YeGFP3. In brief, mutagenic oligonucleotides were used to prime PCR synthesis of a plasmid carrying YeGFP3, the template DNA was then destroyed by digestion with DpnI, and then the resulting DNA was transformed into Escherichia coli. DNA sequencing (carried out by the Stony Brook University DNA Sequencing Facility) confirmed that the correct substitutions were present. The mutant GFP genes were then released as PstI-AscI fragments and then were subcloned to replace the corresponding GFP fragment of plasmid pFa-GFP-URA3 (6), which carries a PCR cassette module for creating GFP fusions in C. albicans. Because of the large number of changes, the mutants were given the more convenient names of CaGFPα (F64L S65T F99S M153T V163A), CaGFPβ (F64L S65T N149K M153T I167T; also known as emerald), and CaGFPγ (F64L S65C V163A I167T). The CaGFPγ was also introduced into vectors that contain selectable markers HIS1 and ARG4 (6). DNA sequences used to design primers for creating GFP fusions in C. albicans were as follows: forward primer, 5′ (region of homology)-GGTGCTGGCGCAGGTGCTTC-3′, and reverse primer, 5′ (region of homology)-TCTGATATCATCGATGAATTCGAG-3′.CDC11-GFP fusion genes were created in C. albicans by homologous recombination, as described previously (4, 6). In brief, long oligonucleotide primers with homology to the 3′ end of the CDC11 open reading frame were used to prime PCR synthesis of each of the corresponding GFP variant genes plus an adjacent selectable marker gene (URA3). These DNA elements were then introduced into C. albicans cells and allowed to recombine with the homologous region of the CDC11 gene in C. albicans to create the CDC11-GFP fusion genes. Sequences used for the design of PCR primers to amplify the pFa-GFP plasmids are shown above. Cells carrying the indicated CDC11-GFP fusion gene were grown overnight in log phase in synthetic medium (yeast nitrogen base plus amino acids and dextrose). Cdc11-GFP fluorescence intensity was analyzed with an Olympus BH2 microscope equipped with a Zeiss AxioCam camera run by Openlab software. The relative GFP signal was determined by measuring the intensity of GFP fluorescence of the septin ring and then subtracting the fluorescence of an area immediately adjacent to each ring. All samples were visualized under the same conditions.Samples were prepared for Western blot analysis by resuspending cells in TNE lysis buffer (10 mM Tris base, 1 mM EDTA, 100 mM NaCl) with 100× protease mix (40 mg/ml pepstatin A, 40 mg/ml aprotinin, 20 mg/ml leupeptin) and then agitating in the presence of glass beads. The supernatant was collected after low-speed centrifugation at 3,000 rpm for 1 min, protein concentrations were determined by the bicinchoninic acid (BCA) protein assay (Pierce), and then equal amounts of protein extract were separated by gel electrophoresis and transferred to a Protran nitrocellulose membrane (Whatman GmbH). The blots were incubated with mouse anti-GFP (Millipore), rabbit anti-glucose-6-phosphate dehydrogenase (anti-G6PD; Sigma), or rabbit anti-Cdc11 (Santa Cruz Biotechnology) primary antibodies; washed; and then incubated with either goat anti-mouse IRDye 800cw or goat anti-rabbit IRDye 680 (Li-Cor Biosciences, Lincoln, NE). The immunoreactive proteins were visualized with a Li-Cor fluorescence scanner run by Odyssey software.Three new GFP variants based on YeGFP3 were constructed by introducing mutations predicted to improve either the fluorescence properties or protein folding (2, 7, 8). Because multiple changes were introduced into each variant, they were given the more convenient names of CaGFPα, CaGFPβ, and CaGFPγ (see above). The key mutations in CaGFPα and CaGFPβ have been described previously (2, 7, 8), but CaGFPγ represents a novel combination of mutations. The 3 new GFP variants plus the YeGFP3 and mut2 versions were compared by fusing them to the C terminus of the Cdc11 septin protein (3). The Cdc11 protein was selected because its restricted localization to the bud neck facilitated microscopic analysis and comparison of fluorescence properties. CDC11-GFP fusion genes were constructed in strain BWP17 (9) using PCR-generated modules with a URA3 selectable marker, as described previously (4, 6).Cells were grown in synthetic medium overnight to log phase at both 30°C and 37°C, temperatures that are commonly used to propagate C. albicans and that may affect the folding properties of GFP. GFP fluorescence was then analyzed by quantifying the intensity of the septin rings in digital images (Fig. ​(Fig.1A).1A). Septin rings were analyzed only if they were obviously in focus and at the same stage of the cell cycle (large budded). CaGFPγ gave a slightly stronger signal than the other variants, which was most obvious at 30°C (Fig. ​(Fig.1A).1A). At least two independent clones were analyzed for each CDC11-GFP variant, and the two gave similar results (data not shown).Open in a separate windowFIG. 1.Properties of Cdc11-GFP fusion proteins. Cells were grown to log phase overnight at the indicated temperature, and then Cdc11-GFP fluorescence was analyzed. (A) Signal intensity for the different versions of Cdc11-GFP was compared in three independent assays in which 50 septin rings per assay were quantified for each different Cdc11-GFP. The average fluorescence intensity was normalized to 100 for Cdc11-YeGPF3. The Cdc11-CaGFPγ variant gave a significantly stronger signal than the other variants (P < 0.001). (B) Western blot analysis comparing the levels of Cdc11-GFP produced in the indicated strains. The lane labeled “neg” refers to the negative-control strain (BWP17) that lacks GFP. Blots were probed with anti-GFP to detect Cdc11-GFP, anti-glucose-6-phosphate dehydrogenase (αG6PD) as a control, and anti-Cdc11 to detect the untagged version of Cdc11.The levels of the Cdc11-GFP proteins at both 30°C and 37°C were compared on two independent Western blots using anti-GFP antibody (Fig. ​(Fig.1B).1B). The relative levels of Cdc11-mut2GFP and Cdc11-CaGFPα were the lowest, consistent with their lower fluorescence intensity. The lower levels of Cdc11-mut2GFP are consistent with the fact that the codons in the mut2 version of GFP were not optimized for expression in C. albicans (5). The Cdc11-YeGFP3 and Cdc11-CaGFPγ were present at higher levels, and the Cdc11-CaGFPβ was produced at even slightly higher levels, consistent with reports that this latter version of GFP (also known as emerald) has improved folding properties (7). The Cdc11-GFP variants did not affect the production of the untagged Cdc11 protein (Fig. ​(Fig.1B1B).Photobleaching is also an important factor for GFP (7), especially in time-lapse studies or Z-stack analysis of different optical sections of cells. Photostability of the GFP variants was examined by taking pictures at 4-s intervals during 1 min of continuous exposure to the fluorescence excitation lamp (Fig. 2A and B). The fluorescence of YeGFP3, mut2GFP, and CaGFPα fused to Cdc11 decayed to 50% of original intensity within 15 to 30 s, and the rate of photobleaching was even higher for CaGFPβ. In contrast, Cdc11-CaGFPγ showed extended photostability at both 30°C and 37°C (half-life [t_1/2] of ∼2 min). Similar results were also obtained for CaGFPγ fused to the Golgi protein Vrg4 (data not shown), although the standard deviations were larger because the mobile Golgi compartments frequently moved out of the focal plane during the time course (data not shown). On a practical level, the Cdc11-GFPγ fluorescence was readily detectable after several minutes of continuous exposure (Fig. ​(Fig.2C),2C), demonstrating its clear advantage for allowing more time to observe protein localization before photobleaching becomes significant.Open in a separate windowFIG. 2.Photostability of GFP variants. (A and B) Relative fluorescence intensity of the GFP variants at 4-s intervals over a time course of 1 min of continuous exposure to the fluorescence excitation lamp after growth at 30°C (A) and at 37°C (B). CaGFPγ showed the best photostability (t_1/2 of ∼2 min). The relative fluorescence was normalized to 100 for each Cdc11-GFP variant at the start of the time course. The results represent the average of three independent assays in which three septin rings were analyzed for each mutant. Error bars indicate standard deviations. (C) Cells carrying Cdc11 fused to YeGFP3 or CaGFPγ were continuously exposed to the fluorescence excitation lamp, and then images of septin rings were captured at the indicated times.Altogether, Cdc11-CaGFPγ had the best overall properties based on protein levels, signal intensity, and photostability in C. albicans. The higher level of Cdc11-CaGFPβ production was apparently offset by increased photobleaching, resulting in no overall advantage for this variant. The Cdc11-CaGFPα was produced at relatively low levels, and it was less photostable compared to the other versions. Thus, CaGFPγ is a novel GFP variant that offers improved features for the study of protein localization in C. albicans and will likely also be useful for expression in other species.     

GFP工程酵母菌的构建及其对Cu2+的荧光响应

从酿酒酵母基因组DNA中克隆到金属硫蛋白启动子(PCUP1)片段,将绿色荧光蛋白(GFP)基因置于PCUP1的调控下,构建重组质粒pCUP9K-GFP,并通过氯化锂法转化毕赤酵母,获得工程菌株。工程菌细胞及其发酵液中可检出GFP荧光,表明PCUP1能启动外源基因GFP转录,使工程菌表达并分泌GFP。研究发现,工程菌培养液中分别加入10μmol/L的铜、铬、镉和砷离子后,铜处理组GFP荧光强度明显增加,其余三种离子对工程菌荧光强度影响不大;用铜离子诱导后,工程菌发酵上清液的荧光强度明显增强,并与铜离子浓度(0～1mmol/L)呈正相关。研究表明,该工程菌中启动子PCUP1受铜离子诱导,GFP的表达对铜离子具有剂量依赖性,在一定浓度范围内,GFP荧光强度与铜离子浓度呈正相关。     

建立以EGFP为报告基因检测HSV感染的细胞株

通过PCR扩增HSV-1ICP6启动子目的基因片段,克隆至真核表达载体pEGFP-1构建重组质粒pICP6-EGFP,转染Vero细胞,经G418筛选获得稳定转染细胞株Vero-ICP6-EGFP细胞。以不同量的HSV-1感染Vero-ICP6-EGFP细胞,分别以倒置荧光显微镜和流式细胞术检测EGFP荧光的量和强度。结果表明,转染细胞株Vero-ICP6-EGFP感染HSV-16h后,倒置荧光显微镜下即可检测绿色荧光;流式细胞术检测结果表明,EGFP荧光的量及强度随HSV-1病毒的滴度增加而增加。已建立的以EGFP为报告基因的Vero-ICP6-EGFP细胞株具有早期、快速、灵敏等优点,特异性较高,可望用于HSV感染的快速诊断及抗病毒药物的检测。     

绿色荧光蛋白及其在植物研究中的应用

绿色荧光蛋白(GFP)是海洋生物水母(Aequorea victoria)体内的一种发光蛋白,分子量27kD,由238个氨基酸组成。该蛋白65~67位Ser-Tyr-Gly三种氨基酸环化加氧形成特殊的生色团结构。野生型GFP发光较弱,而且gfp-cDNA含有隐蔽型剪切位点,而加工改造的GFP在植物中能够正常表达并且加强了荧光信号。GFP作为新的报告基因和遗传标记被广泛应用于植物研究之中。