Characterization of the rhizosphere microbial community from different Arabidopsis thaliana genotypes using phospholipid fatty acids (PLFA) analysis

Total and culturable rhizosphere microbial communities structure from three different genotypes of Arabidopsis thaliana growing on three different substrates was studied with phospholipid fatty acid analysis (PLFA) and multivariate statistical analyses: correspondence analysis (CA) and distance based redundancy analyses (db-RDA). In addition, microbial biomass from different groups (total bacteria, Gram+, Gram? and fungi) was calculated from biomarkers PLFA peak area, both from total and culturable microbial community. db-RDA analysis showed significant differences between soils but not between plant genotypes for culturable microbial community structure. Total microbial community was significantly different between soils, and also between plant lines in each soil. Biomass of different bacterial groups showed significant higher values in soil two rhizosphere irrespective of the plant line. In addition, significant differences between plant lines were also found for microbial biomass of different bacterial groups both in total and culturable microbial community. Throughout the work we have demonstrated that PLFA analysis has been able to show a different behaviour of total microbial community with regard to the culturable fraction analyzed in this work under the influence of plant roots. Microbial biomass of different microbial groups calculated with PLFA biomarkers was a suitable tool to detect differences between soils irrespective of the plant line, and differences in the same soil between plant lines. According to this data, a previous study should be carried out before GMPs are used in field conditions to evaluate the potential alterations that may take place on rhizosphere microbial communities structure which may further affect soil productivity. In conclusion, based on data presented in this work, GMPs alter rhizosphere microbial communities structure and this effect is different depending on the soil. Furthermore, total microbial community is affected to a greater extent than the culturable fraction analyzed.     

Soil microbes alter plant fitness under competition and drought

Plants exist across varying biotic and abiotic environments, including variation in the composition of soil microbial communities. The ecological effects of soil microbes on plant communities are well known, whereas less is known about their importance for plant evolutionary processes. In particular, the net effects of soil microbes on plant fitness may vary across environmental contexts and among plant genotypes, setting the stage for microbially mediated plant evolution. Here, we assess the effects of soil microbes on plant fitness and natural selection on flowering time in different environments. We performed two experiments in which we grew Arabidopsis thaliana genotypes replicated in either live or sterilized soil microbial treatments, and across varying levels of either competition (isolation, intraspecific competition or interspecific competition) or watering (well‐watered or drought). We found large effects of competition and watering on plant fitness as well as the expression and natural selection of flowering time. Soil microbes increased average plant fitness under interspecific competition and drought and shaped the response of individual plant genotypes to drought. Finally, plant tolerance to either competition or drought was uncorrelated between soil microbial treatments suggesting that the plant traits favoured under environmental stress may depend on the presence of soil microbes. In summary, our experiments demonstrate that soil microbes can have large effects on plant fitness, which depend on both the environment and individual plant genotype. Future work in natural systems is needed for a complete understanding of the evolutionary importance of interactions between plants and soil microorganisms.     

A Brassica rapa Linkage Map of EST-based SNP Markers for Identification of Candidate Genes Controlling Flowering Time and Leaf Morphological Traits

For identification of genes responsible for varietal differences in flowering time and leaf morphological traits, we constructed a linkage map of Brassica rapa DNA markers including 170 EST-based markers, 12 SSR markers, and 59 BAC sequence-based markers, of which 151 are single nucleotide polymorphism (SNP) markers. By BLASTN, 223 markers were shown to have homologous regions in Arabidopsis thaliana, and these homologous loci covered nearly the whole genome of A. thaliana. Synteny analysis between B. rapa and A. thaliana revealed 33 large syntenic regions. Three quantitative trait loci (QTLs) for flowering time were detected. BrFLC1 and BrFLC2 were linked to the QTLs for bolting time, budding time, and flowering time. Three SNPs in the promoter, which may be the cause of low expression of BrFLC2 in the early-flowering parental line, were identified. For leaf lobe depth and leaf hairiness, one major QTL corresponding to a syntenic region containing GIBBERELLIN 20 OXIDASE 3 and one major QTL containing BrGL1, respectively, were detected. Analysis of nucleotide sequences and expression of these genes suggested possible involvement of these genes in leaf morphological traits.     

Direct and indirect selection on flowering time,water‐use efficiency (WUE, δ13C), and WUE plasticity to drought in Arabidopsis thaliana

Flowering time and water-use efficiency (WUE) are two ecological traits that are important for plant drought response. To understand the evolutionary significance of natural genetic variation in flowering time, WUE, and WUE plasticity to drought in Arabidopsis thaliana, we addressed the following questions: (1) How are ecophysiological traits genetically correlated within and between different soil moisture environments? (2) Does terminal drought select for early flowering and drought escape? (3) Is WUE plasticity to drought adaptive and/or costly? We measured a suite of ecophysiological and reproductive traits on 234 spring flowering accessions of A. thaliana grown in well-watered and season-ending soil drying treatments, and quantified patterns of genetic variation, correlation, and selection within each treatment. WUE and flowering time were consistently positively genetically correlated. WUE was correlated with WUE plasticity, but the direction changed between treatments. Selection generally favored early flowering and low WUE, with drought favoring earlier flowering significantly more than well-watered conditions. Selection for lower WUE was marginally stronger under drought. There were no net fitness costs of WUE plasticity. WUE plasticity (per se) was globally neutral, but locally favored under drought. Strong genetic correlation between WUE and flowering time may facilitate the evolution of drought escape, or constrain independent evolution of these traits. Terminal drought favored drought escape in these spring flowering accessions of A. thaliana. WUE plasticity may be favored over completely fixed development in environments with periodic drought.     

Natural soil microbes alter flowering phenology and the intensity of selection on flowering time in a wild Arabidopsis relative

Plant phenology is known to depend on many different environmental variables, but soil microbial communities have rarely been acknowledged as possible drivers of flowering time. Here, we tested separately the effects of four naturally occurring soil microbiomes and their constituent soil chemistries on flowering phenology and reproductive fitness of Boechera stricta, a wild relative of Arabidopsis. Flowering time was sensitive to both microbes and the abiotic properties of different soils; varying soil microbiota also altered patterns of selection on flowering time. Thus, soil microbes potentially contribute to phenotypic plasticity of flowering time and to differential selection observed between habitats. We also describe a method to dissect the microbiome into single axes of variation that can help identify candidate organisms whose abundance in soil correlates with flowering time. This approach is broadly applicable to search for microbial community members that alter biological characteristics of interest.     

Evidence for homology of flowering-time genes VFR2 from Brassica rapa and FLC from Arabidopsis thaliana

Variation in flowering time is important for the adaptation of plant species to different natural and agricultural environments. We previously identified VFR2 as one of two major quantitative trait loci (QTLs) controlling vernalization-responsive flowering time in a segregating population derived from a cross of annual and biennial Brassica rapa. The region containing VFR2 is homologous to a region in Brassica napus that controls the same trait, and also to a region on chromosome 5 of Arabidopsis thaliana that contains several flowering-time loci. In order to determine precisely the allelic effects and map position of VFR2, we backcrossed the late allele into an early flowering line and obtained monogenic segregation for flowering time in a BC₃S₁ population. The two homozygous genotypic classes differed by 43 and 95 days to flowering in the field and growth chamber, respectively; and the effect of the late allele was almost completely additive. DNA probes that were previously shown to detect RFLP loci in the VFR2 region, or in the homologous regions of B. napus or A. thaliana (including two DNA clones of flowering-time genes) were used to construct a high-resolution map around VFR2. An RFLP detected by an A. thaliana cDNA clone of flowering locus C (FLC) co-segregated exactly with VFR2 in 414 gametes analyzed (<0.24 cM). FLC is a repressor of flowering and is required for the winter-annual habit of late-flowering ecotypes of A. thaliana. The regulation of FLC RNA in B. rapa was consistent with that seen in A. thaliana; RNA levels were up-regulated in the biennial parent and down-regulated by cold treatment. Thus, VFR2 appears to be homologous to FLC and may control flowering time though a similar mechanism as in A. thaliana .     

Soil-mediated local adaptation alters seedling survival and performance

Background and aims

Soils can act as agents of natural selection, causing differential fitness among genotypes and/or families of the same plant species, especially when soils have extreme physical or chemical properties. More subtle changes in soils, such as variation in microbial communities, may also act as agents of selection. We hypothesized that variation in soil properties within a single river drainage can be a selective gradient, driving local adaptation in plants.

Methods

Using seeds collected from individual genotypes of Populus angustifolia James and soils collected from underneath the same trees, we use a reciprocal transplant design to test whether seedlings would be locally adapted to their parental soil type.

Results

We found three patterns: 1. Soils from beneath individual genotypes varied in pH, soil texture, nutrient content, microbial biomass and the physiological status of microorganisms. 2. Seedlings grown in local soils experienced 2.5-fold greater survival than seedlings planted in non-local soils. 3. Using a composite of height, number of leaves and leaf area to measure plant growth, seedlings grew ～17.5% larger in their local soil than in non-local soil.

Conclusions

These data support the hypothesis that variation in soils across subtle gradients can act as an important selective agent, causing differential fitness and local adaptation in plants.     

Growth and yield traits of sorghum grown on acid soil at varied aluminum saturations

Genetic manipulation of crops to tolerate mineral stresses is a practical approach to improve productivity of tropical acid soils. Both acid soil tolerant (AS-T) and susceptible (AS-S) sorghum [Sorghum bicolor (L.) Moench] genotypes were grown in the field on an acid ultisol at Quilichao, Colombia, South America at 60% (60-Al) and 40% (40-Al) Al saturation to evaluate plants for growth and yield traits. Except for days to flowering and root mass scores, AS-T genotypes showed no differences in growth (plant height, head length and width, second internode length and diameter, and acid soil toxicity rating) and yield (total and stover dry matter yields, grain yield, head yield, seeds per head, and 100-seed weight) traits when plants were grown at 60-Al or 40-Al. Plants grown at 60-Al were delayed in flowering and had lower root mass scores. The AS-S genotypes showed improvement for the growth and yield traits when grown at 40-Al compared to 60-Al. The growth and yield traits of the AS-S genotypes were usually less favorable for plants grown at 40-Al than the same traits were for the AS-T genotypes grown at 60-Al. Harvest indices (ratio of grain to total plant yield) were no different for the genotypes grown at 40-Al, and only slightly higher for the AS-T genotypes grown at 60-Al. Sorghum genotypes more tolerant to acid soil conditions showed favorable growth and yield traits when grown under relatively severe acid soil (60-Al, pH 4.1) conditions. Certain sorghum genotypes were able to adapt and effectively produce grain when grown on acid soils with few inputs to reduce acid soil toxicity problems. Published as Paper No. 6690, Journal Series, Mississippi Agricultural and Forestry Experiment Station. Funding received in part from the International Sorghum/Millet Collaborative Research Support Program (INTSORMIL CRSP) through US Agency for International Development (USAID) grant AID/DAN-1254-G-SS-5065-00 and project Nos. MS-111 (MSU) and NE-114 (UNL).     

Size, activity and catabolic diversity of the soil microbial biomass in a wetland complex invaded by reed canary grass

Reed canary grass (Phalaris arundinacea, L.) invasion of wetlands is an ecological issue that has received attention, but its impact on soil microbial diversity is not well documented. The present study assessed the size (substrate-induced respiration), catabolic diversity (CLPP, community level physiological profiles) and composition (selective inhibition) of the soil microbial community in invaded (>95% P. arundinacea cover) and in non-invaded areas of a wetland occupied by native species grown either as a mixed assemblage (22 species) or as quasi-monotypic stands of Scirpus cyperinus (74% cover). The study also tested the hypothesis that decomposition of lignin- and phenolics-rich plant tissues would be fastest in soils exhibiting high catabolic diversity. Results showed that soil respiration, microbial biomass and diversity were significantly higher (P?<?0.03; 1.5 to 3 fold) in P. arundinacea-invaded soils than in soils supporting native plant species. Fungal to bacterial ratios were also higher in invaded (0.6) than in non-invaded (0.4) plots. Further, canonical discriminant analysis of CLPP data showed distinct communities of soil decomposers associated with each plant community. However, these differences in microbial attributes had no effect on decomposition of plant biomass which was primarily controlled by its chemical composition. While P. arundinacea invasion has substantially reduced plant diversity, this study found no parallel decline in the size and diversity of the soil microbial community in the invaded areas.     

Plant controls on decomposition rates: the benefits of restoring abandoned agricultural lands with native prairie grasses

Plant species can both directly and indirectly affect soil processes in various ways, including through functional traits related to the quantity and chemistry of biomass produced. Understanding how functional traits affect soil processes may be particularly important in restorations that specifically select a target plant community. In this study, I examined how species differing in litter traits alter decomposition, both directly via chemistry and indirectly via influences on soil microclimate. Decomposition dynamics of two old-field grasses were compared with the native prairie grass, Andropogon gerardii, in two Michigan old-fields. Decomposition rates were strongly, negatively related to tissue chemistry, but showed little effect of microclimate differences. Soil bacterial community composition differed between species at one site, while extracellular enzyme activities differed between species at the other site. These findings suggest plant species may be altering microbial community function. Overall, litter chemistry was the dominant factor determining decomposition rates, suggesting that restoring native prairie grasses with recalcitrant litter into grass-dominated old-fields could slow litter decomposition and ultimately lead to changes in soil carbon and nitrogen cycling. Eventually, this could lead to soils that more closely resemble the more organic-rich soils of native prairies and ultimately increase prairie plant community restoration success.     

Species-specific effects of polyploidisation and plant traits of Centaurea maculosa and Senecio inaequidens on rhizosphere microorganisms

Invasive plant species represent a threat to terrestrial ecosystems, but their effects on the soil biota and the mechanisms involved are not yet well understood. Many invasive species have undergone polyploidisation, leading to the coexistence of various cytotypes in the native range, whereas, in most cases, only one cytotype is present in the introduced range. Since genetic variation within a species can modify soil rhizosphere communities, we studied the effects of different cytotypes and ranges (native diploid, native tetraploid and introduced tetraploid) of Centaurea maculosa and Senecio inaequidens on microbial biomass carbon, rhizosphere total DNA content and bacterial communities of a standard soil in relation to plant functional traits. There was no overall significant difference in microbial biomass between cytotypes. The variation of rhizosphere total DNA content and bacterial community structure according to cytotype was species specific. The rhizosphere DNA content of S. inaequidens decreased with polyploidisation in the native range but did not vary for C. maculosa. In contrast, the bacterial community structure of C. maculosa was affected by polyploidisation and its diversity increased, whereas there was no significant change for S. inaequidens. Traits of S. inaequidens were correlated to the rhizosphere biota. Bacterial diversity and total DNA content were positively correlated with resource allocation to belowground growth and late flowering, whereas microbial biomass carbon was negatively correlated to investment in reproduction. There were no correlations between traits of the cytotypes of C. maculosa and corresponding rhizosphere soil biota. This study shows that polyploidisation may affect rhizosphere bacterial community composition, but that effects vary among plant species. Such changes may contribute to the success of invasive polyploid genotypes in the introduced range.     

Soil influence on the performance of 26 native herbaceous plants suitable for sustainable Mediterranean landscaping

Native herbaceous plants have the potential for renaturalizing and recovering derelict soils, such as urban or anthropized soils.Ecological restoration following the establishment of a native wildflower meadow should lead to a reduction in management costs and to the preservation of native plant populations. This study was aimed at determining the ecological characteristics and the cultivation needs of 26 herbaceous species native to Italy and southern Europe in order to identify their landscape potential in low-maintenance conditions. The species were selected on the basis of their adaptation to unproductive soils in semi-natural and rural areas, and on their ornamental value, including their ability to attract insects. Mono-specific plots were set up in three different soils. Seed germination, seedling emergence, flowering dynamics, and plant growth were determined. Dormancy-breaking treatments were effective in improving the germination of most species. The percentage of field establishment and biomass appeared to be affected by the physical and chemical characteristics of the soil. Soil texture slightly affected seedling emergence, whereas soil texture and the C and N levels affected plant growth, the number of flowers and the duration of flowering. Dianthus carthusianorum, Verbascum blattaria, Matricaria chamomilla and Hypochoeris radicata developed a higher biomass per plant in the soils with a low nutrient content, indicating their adaptability to infertile soils. Daucus carota, Papaver rhoeas, Verbascum sinuatum, Coleostephus myconis produced a higher biomass per plant in the most fertile soil, where they appeared to show a higher potential when competing with other species. The ecological characteristics shown by the native plants are extremely important in terms of combining seeds of different species to create and to maintain semi-natural herbaceous communities in low-maintenance landscapes.     

Genome-wide analysis of gene expression to distinguish photoperiod-dependent and -independent flowering in Brassicaceae

Photoperiod is the most important environmental cue for the regulation of flowering time, a highly important agronomic trait for crop productivity. To help elucidate the photoperiodic control of flowering in Brassicaceae, we performed microarray experiments using species-specific oligo-arrays with the long day (LD) plant Arabidopsis thaliana and the photoperiod-independent plant rapid cycling Brassica rapa (RCBr). Enrichment analysis of the gene ontologies of differentially expressed genes (DEGs) did not uncover clear differences in gene expression between photoperiod-dependent and -independent plants. Most genes that were up-regulated under LD conditions in Arabidopsis were also up-regulated in RCBr. In addition, most genes associated with light signaling and the circadian clock showed similar expression patterns between Arabidopsis and RCBr, implying that most components known to be key regulators in the photoperiodic flowering pathway are not responsible for the photoperiod independence of RCBr. Nonetheless, we identified one clock-associated gene, PSEUDO-RESPONSE REGULATOR9 (PRR9), as a candidate gene explaining the photoperiod independence of RCBr. The mechanism underlying the role of PRR9 in photoperiodic control and genomic polymorphisms should be further explored using different B. rapa species.     

宁南山区典型植物根际与非根际土壤微生物功能多样性

选择宁南山区9种典型植物的根际与非根际土壤为研究对象,采用Biolog方法对土壤微生物功能多样性进行了研究。结果表明:9种不同植物根际土壤与非根际土壤的微生物活性(AWCD)、微生物多样性指数和微生物均匀度指数均存在明显差异;除冰草外,其他各种植物的根际土壤的微生物活性AWCD、微生物多样性指数和微生物均匀度指数均比非根际土壤的高;9种典型植物根际土壤微生物主要碳源利用类型是羧酸类和氨基酸类,非根际土壤微生物主要碳源利用类型是羧酸类、胺类、氨基酸类;微生物活性、微生物多样性指数和微生物均匀度指数两两之间均达到了极显著相关,与土壤化学性质各指标之间均未达到显著相关水平。     

The arbuscular mycorrhizal fungus Rhizophagus intraradices and other microbial groups affect plant species in a copper-contaminated post-mining soil

Background and aimArbuscular mycorrhizal fungi (AMF) have an important role in plant-microbe interactions. But, there are few studies in which the combined effect of AMF with a stress factor, such as the presence of a metal, on plant species were assessed. This study investigated the effect of arbuscular mycorrhizal (AM) fungus Rhizophagus intraradices and other soil microbial groups in the presence of copper on three plant species in a microcosm experiment.MethodsTwo grass species Poa compressa and Festuca rubra and one herb species Centaurea jacea were selected as model plants in a pot-design test in which soils were artificially contaminated with copper. Treatments were bacteria (control), saprophytic fungi, protists, and a combined treatment of saprophytic fungi and protists, all in the presence or absence of the AM fungal species. After sixty days, plants were harvested and the biomass of grass and herb species and microbial respiration were measured.ResultsThe results showed almost equal above- and belowground plant biomass and microbial respiration in the treatments in the presence or absence of R. intraradices. The herb species C. jecea responded significantly to the soil inoculation with AM fungus, while grass species showed inconsistent patterns. Significant effect of AMF and copper and their interactions was observed on plant biomass when comparing contaminated vs. non-contaminated soils.ConclusionStrong effect of AMF on the biomass of herb species and slight changes in plant growth with the presence of this fungal species in copper-spiked test soils indicates the importance of mycorrhizal fungi compared to other soil microorganisms in our experimental microcosms.     

The effect of pyrogenically modified substrates on mineralizing activity and growth strategies of microorganisms of grey forest soil

The rates of the mineralization processes initiated by the input of plant residues and pyrogenically modified plant material into gray forest soil under forests and meadows were assayed. While meadow plant residues was mineralized more rapidly than the forest floor, decomposition of the pyrogenic material resulted in disproportional changes in CO₂ emission from soils. Statistical treatment showed that the respiratory activity of CO₂ emission by heterotrophic microorganisms, which is a physiological characteristic of microbial communities, is 89% determined by the substrate quality. The maximal specific growth rate, which reflects the functional changes in microbial communities, was affected by the cenosis (36%) and the substrate (30%). Most of the carbon of the original plant material (up to 90%) was removed during the burning of plant substrates. The remaining compounds in the pyrogenically transformed material changed the process of mineralization in soil compared both to the control variant and to soil enriched with plant residues. Input of plant residues and ash into the soil resulted in increased total and active biomass, while the maximal specific growth rate decreased and the generation time for the active biomass increased. In the case of soils with plant residues, these changes in the state of microbial communities were brief and occurred during the period of intense mineralization (0–5 days), while, in soils with plant ash, stable changes were revealed after more prolonged incubation. Experimental determination of the microbial biomass turnover time (MTT) by means of two methods (from the ratio between the microbial biomass and respiration and from microbial specific growth rates) made it possible to determine the economical coefficient Y for microbial communities metabolizing the substrates of different availability. Depending on the experimental variant, the Y values varied from 0.22 to 0.51. Decreased maximal specific growth rate and increased values of Y (the coefficient of efficiency of substrate utilization) showed the predominant contribution of K-strategists in the mineralization of low available substrates in soil. The balance calculations and physiological characteristics of the microbial community suggested that the priming effect was most probable in soils enriched with plant ash.     

Plant Species Composition Effects on Belowground Properties and the Resistance and Resilience of the Soil Microflora to a Drying Disturbance

We hypothesised that plant species composition and richness would affect soil chemical and microbial community properties, and that these in turn would affect soil microbial resistance and resilience to an experimentally imposed drying disturbance. We performed a container experiment that manipulated the composition and species richness of common pasture plant species (Trifolium repens, Lolium perenne, and Plantago lanceolata) by growing them in monoculture, and in all the possible two and three-way combinations, along with an unplanted control soil. Experimental units were harvested at four different times over a 16-month period to determine the effect of plant community development and seasonal changes in temperature and moisture on belowground properties. Results showed that plant species composition influenced soil chemistry, soil microbial community properties and soil microbial resistance and resilience. Soil from planted treatments generally showed reduced soil microbial resistance to drying compared to unplanted control soils. Soils from under T. repens showed a higher resistance and resilience than the soils from under P. lanceolata, and a higher resistance than soils from under L. perenne. We suggest that differences across soils in either resource limitation or soil microbial community structure may be responsible for these results. Plant species richness rarely affected soil microbial community properties or soil microbial resistance and resilience, despite having some significant effects on plant community biomass and soil nitrogen contents in some harvests. The effect that treatments had for most variables differed between harvests, suggesting that results can be altered by the stage of plant community development or by extrinsic environmental factors that varied with harvest timing. These results in combination show that soil microbial resistance and resilience was affected by plant community composition, and the time of measurement, but was largely unrelated to plant species richness.     

Nutrient addition affects AM fungal performance and expression of plant/fungal feedback in three serpentine grasses

Plant/soil microbial community feedback can have important consequences for species composition of both the plant and soil microbial communities, however, changes in nutrient availability may alter plant reliance on mycorrhizal fungi. In this research, we tested whether plant/soil community feedback occurs and if increased soil fertility altered the plant/soil community interactions. In two greenhouse experiments we assessed plant and AM fungal performance in response to different soils (and their microbial communities), collected from under three co-occurring plants in serpentine grasslands, and nutrient treatments. The first experiment consisted of two plant species (Andropogon gerardii, Sorghastrum nutans), their soil communities, and three nutrient treatments (control, calcium, N-P-K), while the second experiment used three plant species (first two and Schizachyrium scoparium), their soil communities collected from a different site, and two nutrient treatments (control, N-P-K). Plant/soil community feedback was observed with two of the three species and was significantly affected by nutrient enrichment. Negative Sorghastrum/soil feedback was removed with the addition of N-P-K fertilizer at both sites. Andropogon/soil feedback varied between sites and nutrient treatments, while no differential Schizachyrium growth relative to soil community was observed. Addition of N-P-K fertilizer to the nutrient poor serpentine soils increased plant biomass production and affected plant/soil community interactions. Calcium addition did not affect plant biomass, but was associated with significant increases in fungal colonization regardless of plant species or soil community. Our results indicate that nutrient enrichment affected plant/soil community feedback, which has the potential to affect plant and soil community structure.     

Positive effects of plant diversity on soil microbial biomass and activity are associated with more root biomass production

This study aims to explore relationships between plant diversity and soil microbial function and the factors that mediate the relationships. Artificial plant communities (1, 2, 4 and 8 species) were established filled with natural and mine tailing soils, respectively. After 12 months, the plant species richness positively affected the soil microbial functional diversity in both soil environments but negatively affected microbial biomass and soil basal respiration in the natural soil. The root biomass positively correlated with the microbial biomass, cultural bacterial activity and soil basal respiration in both soil environments. Moreover, the D_i (deviations between observed performances and expected performances from the monoculture performance of each species of mixture) of microbial biomass, cultural bacterial activity and soil basal respiration positively correlated with the D_i of root biomass in both soil environments. Consistent with stress-gradient hypothesis, the D_mix (over-function index) of aboveground biomass positively correlated plant species richness in the mine tailing soil. Results suggest that the root biomass production is an important mechanism that affects the effects of plant diversity on soil microbial functions. Different responses of soil microbial function to increasing plant diversity may be due to root biomass production mediated by other factors.