Dry season factors determining habitat use and distribution of mouse deer (Moschiola indica) in the Western Ghats

Ecology of Asia's smallest ungulate, the Indian chevrotain or mouse deer (Moschiola indica), has been poorly assessed. We used camera-trapping data to investigate habitat use of mouse deer in Mudumalai Tiger Reserve. Presence/absence data, collected under a systematic sampling framework, were used to test a priori hypotheses incorporating covariates believed to influence mouse deer occurrence and detection. The average occupancy rate of mouse deer in the study area was 0.56 (SE?=?0.22) with a low detection probability (0.29, SE?=?0.14). Model selection indicated that presence of moist bamboo brakes positively influenced while percent leaf litter negatively influenced mouse deer occupancy. Placement of camera-traps along narrow trails positively influenced detection probability of mouse deer. Future conservation efforts in India should focus on preservation of bamboo vegetation and dense forest cover which provide refuge for the mouse deer. Our results illustrate that occupancy can be suitable for monitoring elusive, forest dwelling, small ungulates; however, caution is needed when applying these models on small ranging species, as our study identifies the limitations in our survey design and its improvement for future monitoring which are applicable for similar-sized species across a range of habitats.     

Why are whales big? Genes behind ocean giants

Gigantism is prevalent in animals, but it has never reached more extreme levels than in aquatic mammals such as whales, dolphins, and porpoises. A new study by Silva et al. has uncovered five genes underlying this gigantism, a phenotype with important connections to aging and cancer suppression in long-lived animals.     

Wildlife 3D multi-object tracking

The study of wildlife populations and species has gained increased relevance due to significant endangerment, loss of habitats and world climate change. Using camera traps for monitoring is a common method to estimate species diversity, occupancy and relative abundance. We present a 3D multi-object tracking method for wildlife camera trapping using RGB-D cameras. We infer precise three-dimensional pose estimations of individual animals (i.e. locations and orientations) and also three-dimensional estimations of their observed movements, including velocity estimations. More precisely, we achieved a scaled Average Multi-Object Tracking Accuracy (sAMOTA) of 88.43%. The code is available athttps://github.com/m-klasen/3D_wildlife_tracking.     

西双版纳尚勇自然保护区野生印支虎及其三种主要有蹄类猎物种群现状调查

中国野生印支虎及其猎物种群状况的野外实地研究一直处于空白。本研究使用足迹鉴别法、粪堆计数法,首次对西双版纳尚勇自然保护区野生印支虎种群数量现状及该区域内的虎猎物种群状况进行了调查研究。结果显示:2004 ～ 2009 年间,确认西双版纳保护区存在3 只成年印支虎个体(2 雌1 雄),西双版纳尚勇保护区拥有比较丰富的有蹄类种群,其中虎的主要猎物:水鹿平均密度为7.63 (7.40 ～ 9.23)只/ km² ;赤麂平均密度为17. 39 (11.33 ～24.94)只/ km² ,野猪平均密度为10.26 (7.69 ～ 14.51) 只/ km² ,该区域虎猎物生物量为1 715. 74 kg/ km² 。本研究还探讨了该区域印支虎种群的保护前景以及中国境内开展虎种群调查的适用办法等。     

Prey selection and food habits of three sympatric large carnivores in a tropical lowland forest of the Eastern Himalayan Biodiversity Hotspot

Prey selection and the feeding habits of tiger Panthera tigris, leopard Panthera pardus and Asiatic wild dog Cuon alpinus were investigated from June 2009 to December 2011 in Pakke Tiger Reserve, Arunachal Pradesh. A total of 422 scats were analyzed of which, 109 scats were of tigers, 150 were of leopard and 163 scats were of dholes. Multinomial Likelihood ratio test was used to estimate the prey selectivity of predators and Ivlev index, Pianka index were used to estimate prey preference and overlap respectively. Biomass consumption for three sympatric predators varied from 254.3 kg for dholes to 599.1 kg for tigers. Sambar, barking deer, wild pig were preyed more than their availability by all the predators. Ivlev index shows barking deer and sambar were preferred more than available prey for tiger where as leopard preferred sambar more than available and avoided barking deer. Dhole preferred more than available wild pig and barking deer. There was a high overlap between tiger–leopard (85.3%) and tiger–dhole (77.5%). To the best of our understanding, this study provides the first reliable information on prey selection and food habits of sympatric large carnivores in a protected area of Eastern Himalayan tropical rainforest.     

东北虎豹国家公园东部的野猪生境利用和活动节律初步研究

野猪是世界上分布最广的大型哺乳动物之一,也是东北虎豹国家公园内主要的有蹄类动物,东北虎主要的猎物之一。本文采集了中国虎豹观测网络架设在东北虎豹国家公园东部区域的红外相机完整一年的拍摄数据（2015年5月至2016年4月）,通过占域模型和核密度分析,获得不同季节的野猪生境利用情况和日活动节律,探究人为因素、环境因素和生物因素对野猪生境利用的影响。结果显示,野猪偏好于针叶林和针阔混交林,在靠近居民点的区域活动增加。不同物种间的相互作用对野猪的生境利用产生不同影响,受捕食者压力野猪会倾向于躲避东北虎,但东北豹对野猪占域显示为正向影响。梅花鹿和狍对野猪的影响在不同季节呈现相反,梅花鹿对野猪的占域在冬季呈负向影响,而狍对野猪的占域则在夏季呈负向影响。本研究区域内的野猪夏季有2个活动高峰,冬季有1个活动高峰,在不同季节都倾向于白天和晨昏活动,在日落前达到活动最高峰。本研究揭示东北虎豹国家公园东部区域的野猪生境利用和活动节律是受到植被生境、大型食肉动物和人类因素等多种因素相互作用,长期相适应的结果。     

Prey Specialization by Cougars on Feral Horses in a Desert Environment

Natural controls on the distribution, abundance, or growth rates of exotic species are a desirable mode of intervention because of lower costs compared to anthropogenic controls and greater social acceptance. In the Great Basin, cougars (Puma concolor) are the most widely distributed carnivore capable of killing large ungulate prey. Populations of feral horses (Equus ferus) are widely distributed throughout the Great Basin and can grow at rates up to 20%/year. Although cougars exhibit distributional overlap with horses, it has been assumed that predation is minimal because of differences in habitat use and body-size limitations. To evaluate this hypothesis, we monitored the diets of 21 global positioning system (GPS)-collared cougars in the western Great Basin (5 males, 8 females) and eastern Sierra Nevada (2 males, 6 females) from 2009–2012. We investigated 1,310 potential kill sites and located prey remains of 820 predation events. We compared prey composition and kill rates of cougars inhabiting the Sierra Nevada and Great Basin, and among male and female cougars across seasons. We used generalized linear mixed models (GLMMs) to examine the effects of prey availability and habitat characteristics on the probability of predation on horses by cougars. Mule deer (Odocoileus hemionus) comprised 91% of prey items killed on the Sierra Nevada reference site but only comprised 29% of prey items in the Great Basin study area. Average annual kill rates for deer differed between the Sierra Nevada ( = 0.85 deer/week, range = 0.44–1.3) and Great Basin ( = 0.21 deer/week, range = 0.00–0.43). Diets of cougars in the Great Basin were composed predominantly of horses (59.6%, n = 460 prey items; 13 individuals). Ten cougars regularly consumed horses, and horses were the most abundant prey in the diet of 8 additional individuals in the Great Basin. Cougars on average killed 0.38 horses/week in the Great Basin (range=0.00–0.94 horses/week). Differences in predation on horses between the sexes of cougars were striking; Great Basin females incorporated more horses across all age classes year-round, whereas male cougars tended to exploit neonatal young during spring and summer before switching to deer during winter. Within GLMM models, the probability of predation on horses compared to other prey species increased with elevation, horse density, and decreasing density of mule deer on the landscape, and was more likely to occur in sagebrush (Artemesia spp.) than in pinyon (Pinus monophylla)–juniper (Juniperus osteosperma) forests. Behavior of individual cougars accounted for more than a third of the variation explained by our top models predicting predation on horses in the Great Basin. At landscape scales, cougar predation is unlikely to limit the growth of feral horse populations. In the Great Basin ecosystem, however, cougars of both sexes successfully preyed on horses of all age classes. Moreover, some reproductive, female cougars were almost entirely dependent on feral horses year-round. Taken together, our data suggest that cougars may be an effective predator of feral horses, and that some of our previous assumptions about this relationship should be reevaluated and integrated into management and planning. © 2021 The Wildlife Society.     

Glucocorticoid Stress Responses of Reintroduced Tigers in Relation to Anthropogenic Disturbance in Sariska Tiger Reserve in India

Tiger (Panthera tigris), an endangered species, is under severe threat from poaching, habitat loss, prey depletion and habitat disturbance. Such factors have been reported causing local extermination of tiger populations including in one of the most important reserves in India, namely Sariska Tiger Reserve (STR) in northwestern India. Consequently, tigers were reintroduced in STR between 2008 and 2010, but inadequate breeding success was observed over the years, thus invoking an investigation to ascertain physiological correlates. In the present study, we report glucocorticoid stress responses of the reintroduced tigers in relation to anthropogenic disturbance in the STR from 2011 to 2013. We found anthropogenic disturbance such as encounter rates of livestock and humans, distance to roads and efforts to kill domestic livestock associated with an elevation in fecal glucocorticoid metabolite (fGCM) concentrations in the monitored tigers. In this regard, female tigers seem more sensitive to such disturbance than males. It was possible to discern that tiger’s fGCM levels were significantly positively related to the time spent in disturbed areas. Resulting management recommendations include relocation of villages from core areas and restriction of all anthropogenic activities in the entire STR.     

Estimating Mammalian Abundance Using Camera Traps in the Tropical Forest of Similipal Tiger Reserve,Odisha, India

Knowledge on the occurrence and distribution of species is crucial for designing and evaluating conservation strategies within a geographical region. Similipal Tiger Reserve though confined to a small area needs information on the diversity and abundance of mammalian fauna to ensure conservation of tiger. Thus, we aimed to assess the diversity and abundance of medium to large sized mammals in Similipal Tiger Reserve by using remotely triggered camera traps. A total of 6413 camera trap days at 187 trap stations were deployed from November 2012 to July 2013 to estimate the status of mammal. We obtained 3763 independent photographs and detected 24 species of mammals. The relative abundance index of each mammalian species was calculated. Leopard (Panthera pardus) was the most abundant carnivore while barking deer (Muntiacus muntjac) was the most abundant prey. Anthropogenic activities like hunting, livestock grazing and free ranging domestic dogs were found to be the detrimental factors for the existing mammalian species. These activities should be addressed through conservation and development perception with an interdisciplinary approach, incorporating social and ecological components cautiously.     

Improving wildlife tracking using 3D information

The monitoring of wildlife populations is of growing importance due to the worldwide endangerment of many species, global climate change, and land cover change. Wildlife monitoring by camera traps is an established and non-invasive standard approach to quantify species diversity, estimate occupancy and relative abundance and track animal behaviour in 24/7 documentation. We propose a novel wildlife-specific 3D multi-object tracking workflow using inexpensive stereo camera traps. By embedding carefully efficient 2D methods into the overall 3D workflow, we avoid, on the one hand, costly processing of complex 3D data structures, i.e., 3D point clouds but on the other hand outperform significantly typical 2D tracking approaches with our overall 3D workflow in terms of international established multi-object tracking metrics, i.e., with respect to the reliability and accuracy of the tracking results. The code is available at https://github.com/m-klasen/3d_wildlife-tracking     

Estimating occupancy of the Vulnerable northern tiger cat <Emphasis Type="Italic">Leopardus tigrinus</Emphasis> in Caatinga drylands

Understanding the distribution and habitat preference of threatened species is essential for their conservation. We conducted the first systematic camera trap survey of the Vulnerable northern tiger cat Leopardus tigrinus in Caatinga drylands (Brazil) and tested how its occupancy and detectability patterns are affected by environmental and anthropogenic factors. Species detection-non-detection data, obtained by 7263 camera-days distributed throughout 187 sampling sites on ten Caatinga landscapes, were used to evaluate species detectability and occupancy according to ten environmental and anthropogenic predictors. We built seven detection models and 30 hierarchical occupancy models that have been ranked based on the Akaike Information Criterion. The estimated average occupancy of 0.46 was 38% higher than the naïve occupancy rate (0.34). Species occupancy was higher in locations with greater forest cover and at greater distance to agrarian settlements. Hunting and persecution of northern tiger cats by residents and a possible reduction of their natural prey by hunting may explain the result. On the contrary, more forested environments may represent higher-quality habitats providing greater availability of prey and shelters and protection against anthropogenic threats and extreme temperatures. These results improve the understanding of the ecology of a threatened and poorly known small cat, and they can guide conservation actions such as the creation of dense forest protected areas and provide information for mitigating human-carnivore conflict.     

Feeding the world sustainably: efficient nitrogen use

Globally, overuse of nitrogen (N) fertilizers in croplands is causing severe environmental pollution. In this context, Gu et al. suggest environmentally friendly and cost-effective N management practices and Hamani et al. highlight the use of microbial inoculants to improve crop yields, while reducing N-associated environmental pollution and N-fertilizer use.     

Viral sponges sequester nucleotide signals to inactivate immunity

Bacteria synthesize specialized nucleotide signals to control anti-phage defense. Two papers – by Huiting et al. and Jenson et al. – now reveal that bacteriophages encode protein ‘sponges’ that sequester cyclic oligonucleotide immune signals and inactivate host antiviral immunity.     

Dual function of the CHS3-CSA1 immune receptor pair

Plant nucleotide-binding leucine-rich repeat (NLR) receptors mediate specific recognition of pathogen effectors to initiate effector-triggered immunity. Recently, studies by Schulze et al., Yang et al., and Gu et al. collectively show that the Arabidopsis (Arabidopsis thaliana) NLR pair CHS3-CSA1 acts through two distinct activation modes to recognize different pathogen effectors, thus revealing the dual function of the CHS3-CSA1 pair in plant disease resistance.     

Black-backed jackal diet at Mokolodi Nature Reserve, Botswana

We examined the feeding habits of black‐backed jackals at Mokolodi Nature Reserve, Botswana, by analysing 237 scats collected between November 1995 and February 1997. Jackal dietary habits reflected the availability of a wide variety of food items and the differential vulnerability of prey. Potential animal and plant food available to jackals varies throughout the year because of its seasonal character. Seasonality of prey occurrence in scats was pronounced for small mammals, miscellaneous fruits and invertebrates. Across all seasons, mammals were the most common food resource (32.4%, n = 168), followed by anthropogenic items (14.8%), fruits (12.9%), invertebrates (10.8%), birds (8.5%), unidentified items (3.5%) and reptiles (1.4%). The presence of domestic mammals and poultry remains in scats reveals their importance in the diet of jackals and the tendency of jackals to frequent human settlements in search of food. Some ecological implications of jackal dietary habits are also explored.     

pH regulates peptide–receptor perception

Diverse plant small peptides are perceived by their corresponding receptors to mediate local or long-distance intercellular communications in various developmental and adaptive programs; notably, the mechanisms of peptide–receptor perception remain largely unrevealed. Two reports (Liu et al.; Diaz-Ardila et al.) shed light on how pH regulates peptide–receptor perception.     

ParaSiteDB – A user-friendly database for managing a parasitological collection

ParaSiteDB is an application for arranging and managing a parasitological collection. It has been designed to provide a user-friendly, easily manageable and searchable site and is suitable for small to bigger collections.The source code of the application is available on GitHub: https://github.com/goobar4/aacrg.The demonstration version of the application is available on https://syrota.info/wormbasehttp://syrota.info/wormbase.     

Protein circuit design using de novo proteins

Protein-based biological circuits enable customized control of cellular functions, and de novo protein design enables circuit functionalities that are not possible by repurposing natural proteins. Here, I highlight recent progress in protein circuit design, including CHOMP, developed by Gao et al., and SPOC, developed by Fink et al.     

Measuring tree-ring widths using the CooRecorder software application

We present a brief overview of how to measure tree-ring widths in the software application CooRecorder (Cybis Elektronik & Data AB) for tree-ring analysis complementing two video tutorials. The first tutorial covers the basics of opening files, measuring ring widths, preliminary crossdating with a reference chronology, and setting dates. The second tutorial covers setting earlywood-latewood boundaries, measuring across cracks, inserting locally absent or missing rings, manual adjustments, and metadata. The video tutorials can be found here https://www.youtube.com/watch?v=c-GNKHVUj9I and here https://www.youtube.com/watch?v=xO7Phc93xyM&t=3s. Videos have been closed-captioned in English. Video is also accessible via Mendeley Data, https://doi.org/10.17632/r3v7236kkz.1.