Molecular evolution of cryptochrome genes and the evolutionary manner of photoreceptor genes in <Emphasis Type="Italic">Cardamine nipponica</Emphasis> (Brassicaceae)

Various photoreceptors in plants are used to monitor important environmental light signals and regulate plant development. Despite their functional importance, recent studies have demonstrated that red/far-red absorbing phytochromes or blue/UV-A absorbing cryptochromes are involved in local adaptation within a species’ range. In the present study, to exemplify the intraspecific photoreceptor evolutionary pattern, the genetic structures of cryptochrome genes (CRY1 and CRY2) in Cardamine nipponica (Brassicaceae), of which PHYE, a gene coding one of the phytochromes, was found to be involved in local adaptation between central and northern Japanese populations. Although clear genetic differentiations between central and northern Japan were detected (CRY1: F _ST = 0.63, CRY2: F _ST = 0.53), overall nucleotide diversity was very low (CRY1: π _Total = 0.0014, CRY2: π _Total = 0.0013), and the polymorphism patterns were neutral (CRY1: Tajima’s D = 0.084, P = 0.32, CRY2: D = −0.014, P = 0.39). Therefore, the involvement of cryptochromes in the adaptation to local environments is difficult to postulate. Consequently, this study along with our previous findings suggest that intraspecific photoreceptor gene polymorphisms in C. nipponica were mostly suppressed by purifying selection due to their functional importance as photoreceptors, while some of the photoreceptors may play substantial roles in adaptation to local environments.     

Shifts in plant nutrient use strategies under secondary forest succession

In evergreen broad-leaved forests (EBLFs) in Tiantong National Forest Park, Eastern China, we studied the soil chemistry and plant leaf nutrient concentration along a chronosequence of secondary forest succession. Soil total N, P and leaf N, P concentration of the most abundant plant species increased with forest succession. We further examined leaf lifespan, leaf nutrient characteristics and root–shoot attributes of Pinus massoniana Lamb, the early-successional species, Schima superba Gardn. et Champ, the mid-successional species, and Castanopsis fargesii Franch, the late-successional species. These species showed both intraspecific and interspecific variability along succession. Leaf N concentration of the three dominant species increased while N resorption tended to decrease with succession; leaf P and P resorption didn’t show a consistent trend along forest succession. Compared with the other two species, C. fargesii had the shortest leaf lifespan, largest decay rate and the highest taproot diameter to shoot base diameter ratio while P. massoniana had the highest root–shoot biomass ratio and taproot length to shoot height ratio. Overall, P. massoniana used ‘conservative consumption’ nutrient use strategy in the infertile soil conditions while C. fargesii took up nutrients in the way of ‘resource spending’ when nutrient supply increased. The attributes of S. superba were intermediate between the other two species, which may contribute to its coexistence with other species in a wide range of soil conditions.     

Preliminary bonobo and chimpanzee nesting by habitat type in the northern Lac Tumba Landscape,Democratic Republic of Congo

Knowing how habitat determines the distribution of great apes is essential for understanding their ecology and conservation requirements. Habitats in the northern Lac Tumba Landscape where this study was conducted are mostly swamp and flooded forests, which types have been overlooked in many great ape surveys. This study describes and discusses patterns of bonobo and chimpanzee nesting sites across these habitat types in the general scope of habitat use by great apes. Considerable efforts were deployed to survey forests of the Ngiri Triangle (186 km), Bomongo‐Lubengo (126 km) and Bolombo‐Losombo (112 km). Great ape nesting site encounter rates (r) were calculated for Bonobos (r = 0.21 nesting sites km^?1; Bolombo‐Losombo), chimpanzees (r = 0.11 nesting sites km^?1; Ngiri Triangle) and (r = 0.02 nesting sites km^?1; Bomongo‐Lubengo). Swamps and flooded forests dominated the three zones. Nesting sites were at the highest encounter rates in flooded forests; both great ape species were significantly associated with swampy and flood forests. Human signs did not influence the occurrence of nesting sites in these forests. These results confirm findings from other sites where great apes were observed using swamps; they suggest that future surveys include these types of habitat to avoid under‐estimating population sizes.     

Variation in the population structure between a natural and a human‐modified forest for a pioneer tropical tree species not restricted to large gaps

The distribution of tree species in tropical forests is generally related to the occurrence of disturbances and shifts in the local environmental conditions such as light, temperature, and biotic factors. Thus, the distribution of pioneer tree species is expected to vary according to the gap characteristics and with human disturbances. We asked whether there was variation in the distribution of a pioneer species under different environmental conditions generated by natural disturbances, and between two forests with contrasting levels of human disturbance. To answer this question, we studied the distribution patterns and population persistence of the pioneer tree species Croton floribundus in the size and age gap range of a primary Brazilian forest. Additionally, we compared the plant density of two size‐classes between a primary and an early successional human‐disturbed forest. Croton floribundus was found to be widespread and equally distributed along the gap‐size gradient in the primary forest. Overall density did not vary with gap size or age (F‐ratio = 0.062, P = 0.941), and while juveniles were found to have a higher density in the early successional forest (P = 0.021), tree density was found to be similar between forests (P = 0.058). Our results indicate that the population structure of a pioneer tree species with long life span and a broad gap‐size niche preference varied between natural and human‐disturbed forests, but not with the level of natural disturbance. We believe this can be explained by the extreme environmental changes that occur after human disturbance. The ecological processes that affect the distribution of pioneer species in natural and human‐modified forests may be similar, but our results suggest they act differently under the contrasting environmental conditions generated by natural and human disturbances.     

Hitchhiking with forests: population genetics of the epiphytic lichen Lobaria pulmonaria in primeval and managed forests in southeastern Europe

Availability of suitable trees is a primary determinant of range contractions and expansions of epiphytic species. However, switches between carrier tree species may blur co‐phylogeographic patterns. We identified glacial refugia in southeastern Europe for the tree‐colonizing lichen Lobaria pulmonaria, studied the importance of primeval forest reserves for the conservation of genetically diverse populations and analyzed differences in spatial genetic structure between primeval and managed forests with fungus‐specific microsatellite markers. Populations belonged to either of two genepools or were admixed. Gene diversity was higher in primeval than in managed forests. At small distances up to 170 m, genotype diversity was lower in managed compared with primeval forests. We found significant associations between groups of tree species and two L. pulmonaria genepools, which may indicate “hitchhiking” of L. pulmonaria on forest communities during postglacial migration. Genepool B of L. pulmonaria was associated with European Beech (Fagus sylvatica) and we can hypothesize that genepool B survived the last glaciation associated within the refuge of European Beech on the Coastal and Central Dinarides. The allelic richness of genepool A was highest in the Alps, which is the evidence for a northern refuge of L. pulmonaria. Vicariant altitudinal distributions of the two genepools suggest intraspecific ecological differentiation.     

Genetic structure of the Caribbean giant barrel sponge Xestospongia muta using the I3-M11 partition of COI

In recent years, reports of sponge bleaching, disease, and subsequent mortality have increased alarmingly. Population recovery may depend strongly on colonization capabilities of the affected species. The giant barrel sponge Xestospongia muta is a dominant reef constituent in the Caribbean. However, little is known about its population structure and gene flow. The 5′-end fragment of the mitochondrial gene cytochrome oxidase subunit I is often used to address these kinds of questions, but it presents very low intraspecific nucleotide variability in sponges. In this study, the usefulness of the I3-M11 partition of COI to determine the genetic structure of X. muta was tested for seven populations from Florida, the Bahamas and Belize. A total of 116 sequences of 544 bp were obtained for the I3-M11 partition corresponding to four haplotypes. In order to make a comparison with the 5′-end partition, 10 sequences per haplotype were analyzed for this fragment. The 40 resulting sequences were of 569 bp and corresponded to two haplotypes. The nucleotide diversity of the I3-M11 partition (π = 0.00386) was higher than that of the 5′-end partition (π = 0.00058), indicating better resolution at the intraspecific level. Sponges with the most divergent external morphologies (smooth vs. digitate surface) had different haplotypes, while those with the most common external morphology (rough surface) presented a mixture of haplotypes. Pairwise tests for genetic differentiation among geographic locations based on F _ST values showed significant genetic divergence between most populations, but this genetic differentiation was not due to isolation by distance. While limited larval dispersal may have led to differentiation among some of the populations, the patterns of genetic structure appear to be most strongly related to patterns of ocean currents. Therefore, hydrological features may play a major role in sponge colonization and need to be considered in future plans for management and conservation of these important components of coral reef ecosystems. Communicated by Biology Editor Dr Ruth Gates     

Intraspecific sequence variation of chloroplast DNA among the component species of evergreen broad-leaved forests in Japan

For the purpose of phylogeographic study of lucidophyllous (evergreen broad-leaved) forests in Japan, we surveyed intraspecific chloroplast DNA (cpDNA) variation in 41 component species of such forests. Intraspecific cpDNA variations were detected in 14 species. In 15 species and one species group, 16 non-coding cpDNA regions were examined to find intraspecific sequence variation. The extent of variation in these regions was compared. The largest amount of intraspecific variation was detected in the rps16 region. A relatively large amount of intraspecific variation was detected in the petD-rpoA, rpl16, and trnL-F regions. It is suggested that these regions of cpDNA would be useful for detecting intraspecific variation in plant species, and could provide valuable information for various research purposes.     

Species diversity and community structure in sal (<Emphasis Type="Italic">Shorea robusta</Emphasis>) forests of two different rainfall regimes in West Bengal,India

Knowledge on the structure and composition of the plant communities has enormous significance in conservation and management of forests. The present study aimed to assess the community attributes, viz., structure, composition and diversity in the moist and dry sal (Shorea robusta) forests in the West Bengal province of India and compare them with the other sal forests of India. The phytosociological data from these forests were quantitatively analysed to work out the species richness, diversity, evenness, dominance, importance value, stand density and the basal area. The analysis showed that plant richness and diversity in moist sal forests of northern West Bengal are higher than the dry sal forests of south-west Bengal; a total of 134 tree (cbh ≥30 cm), 113 shrub and 230 herb species were recorded in the moist sal forest compared to 35 tree, 41 shrub and 96 herb species in dry sal forest. Papilionaceae was observed to be the dominant family. Dry sal forests had higher tree dominance (0.81) and stand density (1,006 stems ha⁻¹) but lower basal area (19.62 m²ha⁻¹) while moist sal forest had lower tree dominance (0.18) and stand density (438 stems ha⁻¹) but higher basal area (56.52 m²ha⁻¹). Tree species richness and stem density across girth classes in both the types decreased from the smallest to largest trees, while the occurrence rate of species increased with increase in girth class. A t-test showed significant differences in species richness, basal area and the stand density at 95% confidence level (p = <0.05) in the two forest types. The CCA indicated very low overall match (canonical correlation value = 0.40) between the two sets of variables from moist and dry sal types. The differences in these forests could be attributed to the distinct variations in climatic conditions- mainly the rainfall, disturbance regimes and the management practices.     

Dung beetle (Coleoptera: Scarabaeidae: Scarabaeinae) diversity in continuous forest,forest fragments and cattle pastures in a landscape of Chiapas,Mexico: the effects of anthropogenic changes

We studied the diversity of dung beetles in three different habitats in the Lacandona Forest, Chiapas, Mexico. We found a total of 49 species. Of these, 44 were in well-preserved forests (SC) within the limits of the Montes Azules Biosphere Reserve, 42 in fragmented forests (SF), and 13 in cattle pastures (PZ). These two latter habitats were part of a fragmented landscape. Even though the species richness between the two forest habitats is similar, there is a change in guild composition and structure. About 12% of the species were exclusively found in SC, while 4.1% and 2% were exclusive of SF and PZ respectively. β diversity was the most important element for overall diversity (γ), above that of the local richness (α). Within well-preserved forests, species composition changes substantially, even among neighboring sites. Species diversity within the landscape seems to depend on canopy coverage, soil temperature and geographic distance between sites. Functional groups vary with the habitat. Large-bodied, nocturnal species with specific requirements of soil temperature and compaction are more sensitive to anthropogenic changes. In cattle pastures there is a larger number of heliophilic species, with a higher percentage of small-bodied and roller beetles.     

Spadicoides camelliae and Diplococcium livistonae, two new hyphomycetes on dead branches from Fujian Province, China

Two new dematiaceous hyphomycetes, Spadicoides camelliae and Diplococcium livistonae, are described and illustrated based on specimens collected from the subtropical forests in Fujian Province, southeast China. They were collected on dead branches of Camellia japonica and Livistona chinensis, respectively. Spadicoides camelliae is characterized by polytretic, terminal conidiogenous cells with solitary, ovoid, versicolored, and mainly 2-septate conidia (15.0–22.0 × 7.0–10.0 μm). Diplococcium livistonae is distinguished by polytretic, terminal, and intercalary conidiogenous cells with catenate, cylindrical, concolored, and mainly 2-septate conidia (15.0–28.0 × 5.0–7.0 μm). They are compared with other similar species by their morphological characteristics.     

Diversity and ecology of <Emphasis Type="Italic">Armillaria</Emphasis> species in virgin forests in the Ukrainian Carpathians

In this study, we investigated the diversity and ecology of Armillaria species in virgin pure beech and mixed conifer forests (15,000 ha) of the Carpathian Biosphere Reserve in Ukraine. Armillaria rhizomorphs were systematically sampled, both from the soil and from the root collar of trees (epiphytic), on 79 plots (25 × 20 m) of a 1.5 × 1.5 km grid. In both forest massifs, rhizomorphs were present in the majority of the soil samples, with an estimated dry weight of 512 kg/ha in the pure beech forests and 223 kg/ha in the mixed conifer forests. Similarly, in both forest massifs, most of the trees inspected had rhizomorphs at the root collar. Species identification based on DNA analyses showed that all five annulated European Armillaria species occur in these virgin forests, as previously observed in managed forests in central Europe. However, differences in the frequencies of the single species were observed. The predominance of the preferentially saprotrophic A. cepistipes and A. gallica (84 and 15% of the specimens, respectively) and the absence of significant pathogenic activity suggest that in these virgin forests Armillaria species are most likely to behave as saprotrophs. Forest management may increase the frequency of the pathogenic species A. ostoyae, which is rare in virgin forests.     

Invasion by native tree species prevents biotic homogenization in novel forests of Puerto Rico

There is concern that secondary forests dominated by introduced species, known as novel forests, increase taxonomical similarity between localities and lead to biotic homogenization in human-dominated landscapes. In Puerto Rico, agricultural abandonment has given way to novel forests dominated by the introduced African tulip tree Spathodea campanulata Beauv. (Bignoniaceae). In this study, I characterized the tree species composition of S. campanulata forests in Puerto Rico as means to evaluate if biotic homogenization is occurring. Non-metric multidimensional scaling was used to examine what variables were related to the large (≥10 cm diameter at breast height [DBH]), small (≥2.5 to <10 cm DBH), and juvenile (<2.5 cm DBH) tree species composition of 20 sites. Species composition was strongly related to substrate properties, less related to land use history, and unrelated to spatial attributes. The introduced species component was low (mean = 17%, S.E. = 1.8) and compositional differences were mostly due to native tree species of secondary to old growth forests on equivalent substrates. Animals appear to disperse most species (86%) into these forests yet because of this some introduced species will persist. Although uncommon species were largely absent, recent species establishment is shaped by substrate properties making biotic homogenization in these forests unlikely. The S. campanulata forests of Puerto Rico facilitate native tree species establishment in lands where poor management practices extirpated the original forest. These results highlight the importance of remnant old growth forests or trees that act as seed dispersal sources and facilitate native species recovery in novel forests.     

Carbon and Nitrogen Dynamics of Boreal Jack Pine Stands With and Without a Green Alder Understory

We compared the species composition, structure and selected components of the carbon (C) and nitrogen (N) budgets of similar-aged, mature boreal jack pine (Pinus banksiana Lamb.) forests with and without green alder [Alnus crispa (Ait.) Pursh.] in two different boreal environments. The C and N content of the overstory biomass components (for example, stem, branch, and foliage), total vegetation, forest floor, and mineral soil were greater (P= 0.05 to P= 0.10) for jack pine with alder (JPA) stands than for jack pine without alder (JP) stands at both study areas. Jack pine foliage N isotopic discrimination (δ¹⁵N) and annual litterfall N content were significantly greater (P < 0.05) in the JPA than the JP stands at both study areas, suggesting that alder was fixing N and that N availability was greater in the JPA than the JP stands. The greater leaf area index (LAI) and overstory C accumulation in the JPA than the JP stands (P < 0.05) is likely because of the greater N availability in the JPA stands, but the effect of soil texture discontinuity on water availability in the JPA stands can not be dismissed. Percent ground cover by feathermoss varied among the jack pine communities and was positively correlated with overstory LAI (r ²= 0.83, P< 0.05). One index of N-use efficiency (NUE), defined as aboveground net primary productivity (ANPP) per litterfall N, was significantly greater (P < 0.05) for the JP than the JPA stands, but a second index of NUE, ANPP/N uptake, did not differ between the two jack pine communities. Jack pine trees growing without alder produced more organic matter per unit of N, but percent N retranslocation from senescing foliage and N mean residence time in the overstory did not differ between the JPA and the JP stands. A conceptual model is presented that illustrates the potential influence of alder on the species composition, structure, and function of boreal jack pine forests. Received 6 January 1998; accepted 15 April 1998.     

Temporal and spatial partitioning of water resources among eight woody species in a Hawaiian dry forest

Lowland dry forests are unique in Hawaii for their high diversity of tree species compared with wet forests. We characterized spatial and temporal partitioning of soil water resources among seven indigenous and one invasive dry forest species to determine whether the degree of partitioning was consistent with the relatively high species richness in these forests. Patterns of water utilization were inferred from stable hydrogen isotope ratios (δD) of soil and xylem water, zones of soil water depletion, plant water status, leaf phenology, and spatial patterns of species distribution. Soil water δD values ranged from –20‰ near the surface to –48‰ at 130 cm depth. Metrosideros polymorpha, an evergreen species, and Reynoldsia sandwicensis, a drought-deciduous species, had xylem sap δD values of about –52‰, and appeared to obtain their water largely from deeper soil layers. The remaining six species had xylem δD values ranging from –33 to –42‰, and apparently obtained water from shallower soil layers. Xylem water δD values were negatively correlated with minimum annual leaf water potential and positively correlated with leaf solute content, an integrated measure of leaf water deficit. Seasonal patterns of leaf production ranged from dry season deciduous at one extreme to evergreen with near constant leaf expansion rates at the other. Species tapping water more actively from deeper soil layers tended to exhibit larger seasonality of leaf production than species relying on shallower soil water sources. Individuals of Myoporum sandwicense were more spatially isolated than would be expected by chance. Even though this species apparently extracted water primarily from shallow soil layers, as indicated by its xylem δD values, its nearly constant growth rates across all seasons may have been the result of a larger volume of soil water available per individual. The two dominant species, Diospyros sandwicensis and Nestegis sandwicensis, exhibited low leaf water potentials during the dry season and apparently drew water mostly from the upper portion of the soil profile, which may have allowed them to exploit light precipitation events more effectively than the more deeply rooted species. Character displacement in spatial and temporal patterns of soil water uptake was consistent with the relatively high diversity of woody species in Hawaiian dry forests. Received: 20 May 1999 / Accepted: 2 March 2000     

Legacy of thinning on woody species composition and structure in southern Appalachian Mountain hardwood forests: restoration implications

In the Appalachian Mountains, Liriodendron tulipifera monocultures are widespread, with these forests lacking both species and structural diversity. In this study, we developed models that described the effects of thinning treatments, conducted almost 60 years ago, on the density, composition, and functional identity of the woody understory in L. tulipifera forests. The woody understory of these thinned L. tulipifera forests was diverse, with the small seedling (<1.4 m), large seedling (≥1.4 m and <2.54 cm dbh), and sapling (≥2.54 and <12.7 cm) layers possessing 38, 32, and 23 species, respectively. Although model performance was low to moderate (r² = 0.05–0.40), we found that legacy effects, alone or in combination with environmental variables, explained, in part, the variability associated with the density, composition, and functional identity of the small seedling, large seedling, and sapling size classes, with the relative influence of legacy versus environmental effects varying by metric and size class. Post-thinning basal area and/or percent of basal area removed were not the primary legacy effects influencing the woody understory. Instead, legacy effects associated with species composition of the overstory before and/or after thinning along with average stem diameter post-thinning, variation in stem diameter post-thinning, and age at the time of thinning were more influential than density or thinning intensity. This study provides evidence that conserving species diversity during forest management activities can have positive long-term effects on composition and function of the woody understory and increase restoration potential.     

Mitochondrial DNA reveals low population differentiation in elongate loach, <Emphasis Type="Italic">Leptobotia elongata</Emphasis> (Bleeker): implications for conservation

Elongate loach (Leptobotia elongata (Bleeker)), an endemic fish species to China, is a famous ornamental freshwater fish. Here, a comparative study of mtDNA control region (D-loop) (835 bp) sequences was performed to analyze its wild population structure and evaluate the genetic diversity for 110 individuals from five locations in the upper reaches of the Yangtze River, China. A total of 49 polymorphic sites and 45 haplotypes yielded high haplotype diversity (h = 0.952), but low nucleotide diversity (π = 0.00454) as that of many fish species. Sequence divergences between haplotypes ranged from 0.0033 ± 0.0011 to 0.0050 ± 0.0012 in intra-groups, and from 0.0037 ± 0.0.0011 to 0.0050 ± 0.0012 between groups. Significant values of Tajima’s D (−1.86383, P < 0.01) and Fu’s F _S (−25.93, P < 0.01), together with uni-modal mismatch distribution, indicated a recent genetic bottleneck or population expansion of the species. Analysis of molecular variance (AMOVA) indicated a small amount of differentiation among groups (1.7%); most of the total variation occurred within groups (98.3%). Also, there was no significant population structure (F _ST = 0.017, P > 0.05), and estimates of gene flows among groups were extremely high (Nm = 28.88), suggesting low genetic divergence between populations in the species. The lack of genetic differentiation among groups is most likely due to the combined gene flow from the downstream movement of eggs and larvae with currents and the upstream or downstream migration of adults throughout the distribution. These groups of L. elongata distributed in upper reaches of the Yangtze River should be considered as a single management unit.     

Litterfall dynamics and nitrogen use efficiency in two evergreen temperate rainforests of southern Chile

Abstract In unpolluted regions, where inorganic nitrogen (N) inputs from the atmosphere are minimal, such as remote locations in southern South America, litterfall dynamics and N use efficiency of tree species should be coupled to the internal N cycle of forest ecosystems. This hypothesis was examined in two evergreen temperate forests in southern Chile (42°30′S), a mixed broad‐leaved forest (MBF) and a conifer forest (CF). Although these forests grow under the same climate and on the same parental material, they differ greatly in floristic structure and canopy dynamics (slower in the CF). In both forests, biomass, N flux, and C/N ratios of fine litterfall were measured monthly from May 1995 to March 1999. There was a continuous litter flux over the annual cycle in both forests, with a peak during autumn in the CF. In the MBF, litterfall decreased during spring. In both forests, the C/N ratios of litterfall varied over the annual cycle with a maximum in autumn. Annual litterfall biomass flux (Mean ± SD = 3.3 ± 0.5 vs 2.0 ± 0.5 Mg ha^?1) and N return (34.8 ± 16 vs 9.1 ± 2.8 kg N ha^?1) were higher in the MBF than in the CF. At the ecosystem level, litterfall C/N was lower in the MBF (mean C/N ratio = 60.1 ± 15, n = 3 years) suggesting decreased N use efficiency compared with CF (mean C/N ratio = 103 ± 19.6, n = 3 years). At the species level, subordinated (subcanopy) tree species in the MBF had significantly lower C/N ratios (<50) of litterfall than the dominant trees in the CF and MBF (>85). The litterfall C/N ratio and percentage N retranslocated were significantly correlated and were lower in the MBF. The higher net N mineralization in soils of the MBF is related to a lower N use efficiency at the ecosystem and species level.     

降香黄檀不同混交林土壤细菌多样性差异分析

为探讨降香黄檀不同混交林土壤细菌的多样性及其与土壤性质的关系,应用高通量测序技术,比较降香黄檀(Dalbergia odorifera T.Chen)分别与奥氏黄檀(Dalbergia oliveri)、大果紫檀(Pterocarpus macarocarpus)、檀香(Santalum album L.)和母生(Homalium hainanense Gagnep.)混交的4种模式土壤细菌多样性,并结合土壤的理化、酶活进行了相关性分析。结果表明,14种混交林土壤的理化、酶活均存在差异。其中降香黄檀与檀香混交林土壤的含水量、有机质、全氮、有效钾和脲酶含量最高,分别为:5.24%、27.5 g/kg、0.85 mg/g、37.46 mg/kg和0.32 mg/kg,降香黄檀与大果紫檀混交林土壤的p H、有效磷和多酚氧化酶含量最高,分别为:4.48、6.04 mg/kg、4.19 mg/kg。2通过高通量测序表明四种混交模式土壤细菌的丰富度为:降香黄檀×檀香降香黄檀×大果紫檀降香黄檀×奥氏黄檀降香黄檀×母生,土壤细菌多样性为:降香黄檀×大果紫檀降香黄檀×奥氏黄檀降香黄檀×檀香降香黄檀×母生。其中,变形菌门、酸杆菌门、放线菌门、绿弯菌门和厚壁菌门为4种混交模式中的主要菌群。3经冗余分析和相关性分析表明,影响降香黄檀混交林土壤细菌群落结构和细菌多样性的主要土壤理化因子为:p H值、脲酶、多酚氧化酶和有机质。     

Alternative pathways of liana communities in the forests of northwestern Argentina

Liana dynamics in secondary and mature forests are well known in tropical areas dominated by native tree species. Outside the tropics and in secondary forests invaded by exotic species, knowledge is scarce. In this study, we compare liana communities between secondary and mature forests dominated by native species in a subtropical montane area of Sierra de San Javier, Tucuman, Argentina. Additionally, we evaluate changes of liana communities in secondary forests with increasing densities of Ligustrum lucidum and Morus alba, two of the most invasive exotic trees of the area. We surveyed liana species richness and density in three 30-year secondary patches, four 60-year secondary patches, and four mature patches dominated by native tree species, to analyze changes in liana communities with forest age. Within each patch, we sampled 10–25 20 × 20 m quadrats. Additionally, we surveyed liana density and species richness in secondary forest patches with different densities of L. lucidum and M. alba. In native-dominated forests, liana species richness increased and showed a tendency of increasing basal area from 30-year secondary forests to mature forests. Liana density was highly variable, and most of the species were shared between native-dominated secondary and mature forests. Liana density and species richness decreased with L. lucidum density, whereas in secondary forests highly dominated by M. alba, lianas increased in density. Overall, lianas followed different pathways influenced by native forest succession and exotic tree invasions.     

Plastid DNA variation in highly fragmented populations of <Emphasis Type="Italic">Microbiota decussata</Emphasis> Kom. (Cupressaceae), an endemic to Sikhote Alin Mountains

Microbiota decussata Kom. (Cupressaceae) is a subalpine species endemic to the Sikhote Alin Mountains with populations scattered throughout the range. We used sequence data for four noncoding regions of chloroplast DNA to characterize the genetic diversity in populations sampled from different parts of M. decussata natural range. No variation was observed in the trnT–trnF region, whereas the trnH–psbA, trnS–trnfM, and trnS–trnG regions showed polymorphisms. At the species level, we found a low nucleotide diversity (π = 0.0009) and high haplotype diversity (h = 0.981) as well as high differentiation (Φ_ST = 0.420). N _ST and G _ST values suggested the existence of a phylogeographic structure in M. decussata. The observed patterns of diversity could be explained in part by ecological features of the species and its long-term persistence throughout the range with population expansion, successive fragmentation and isolation.