On the ontogeny of the motor circadian rhythm in crayfish

In this paper we attack the problem of understanding the localization of the main structures involved in the motor circadian rhythm of crayfish by analysing its ontogeny. We present experimental results giving the properties of this rhythm in young and adult crayfish. Then we construct a mathematical model (based on a previous one for the electroretinogram circadian rhythm in the same species) simulating those properties. In the process of constructing the model we clarified and made precise various hypotheses about the biological structures involved in them and about the characteristics of the oscillators present in those structures. We also formulate some hypotheses about the general properties of circadian rhythms. Finally, we propose some experiments suggested by the mathematical model.     

Phase shifts of human circadian rhythms due to shifts of artificial Zeitgebers

In special isolation units, circadian rhythms of human subjects have been investigated under the influence of artificial 24-h Zeitgebers, with 6-h advance and 6-h delay shifts of the Zeitgeber simulating time zone shifts. In most cases, the biological rhythms follow the Zeitgeber shifts in the course of several days: in rare cases, advancing Zeitgeber shifts are followed by delaying shifts of the biological rhythms, either of all variables or, partitioning, of only some of the variables. The rhythm of activity is re-entrained after both Zeitgeber shifts within a few days, independent of the shift direction. The rhythm of rectal temperature needs more time for re-entrainment than the activity rhythm; the rate of re-entrainment is consistently higher after advance than after delay shifts ('direction asymmetry'). Mean value and amplitude of the rectal temperature rhythm are, for some days, reduced after the advance but not after the delay Zeitgeber shift; among the different subjects, the reduction in amplitude is significantly correlated with the direction asymmetry. The rhythm of psychomotor performance (computation speed) re-entrains in parallel to that of rectal temperature; i.e. the performance level is decreased after advance but not after delay shifts. The direction asymmetry in the re-entrainment rates seems to contradict findings in flight experiments where this rate is mostly higher after westward than after eastward flights. Careful considerations, however, show that differences in the re-entrainment behavior after real and simulated time zone shifts disappear when the experimental designs are approximated and when identical procedures of analyzing the data are applied. The results of the time shift experiments are, in all respects tested, in agreement with theoretical postulations; hence, they confirm once more properties of the circadian system deduced earlier. On the other hand, the results are of practical importance since they state significant correlations between the re-entrainment behavior and rhythm parameters measured before the Zeitgeber shifts; this behavior, therefore, can be predicted from data obtained already before the Zeitgeber has been changed in any way: The duration of re-entrainment is correlated with the amplitude, and the decrement in performance with the phase of the rectal temperature rhythm. These practical implications may also apply to shift work.     

Lack of in vivo transcription of Acetabularia mediterranea 1175 bp ctDNA fragment homologous to the Drosophila per locus.

The period (per) locus of Drosophila melanogaster has a fundamental role in the expression of biological rhythms. A DNA sequence homologous to a short region of the Drosophila per locus was detected in the chloroplast of Acetabularia mediterranea. A 1175 bp DNA fragment containing the sequence was used as a probe in 'Northern' hybridization experiments. It was found that this DNA was not transcribed or only marginally transcribed in A. mediterranea, at least at the developmental stage just prior to cap formation. It seems that the 1175 bp ctDNA fragment is not involved in the Acetabularia biological rhythm mechanism.     

A re-examination of the role of the nucleus in generating the circadian rhythm in Acetabularia.

The role of the nucleus in the generation of the circadian rhythm in Acetabularia has been nuclear. Early experiments showed that the plant could exhibit a circadian rhythm in the absence of a nucleus. However, other experiments appeared to show that the nucleus could impart phase information to the rhythm, and so therefore must be a part of the system that generates the rhythm. We have conducted experiments similar to these--in particular, one in which the nuclear end of the plant was entrained on a light-dark cycle that was opposite that of the rest of the plant. The phase of the free-running rhythm of this type of plant is not consistent with the conclusion that the nucleus is part of the circadian oscillator. We have also tried entraining opposite ends of plants with no nuclei on opposite light-dark cycles. The ultimate phases of these plants appear to be nearly random. A possible interpretation of these experiments is discussed.     

Computational identification of protein-protein interactions in rice based on the predicted rice interactome network

Plant protein-protein interaction networks have not been identified by large-scale experiments. In order to better understand the protein interactions in rice, the Predicted Rice Interactome Network (PRIN; http://bis.zju.edu.cn/prin/) presented 76,585 predicted interactions involving 5,049 rice proteins. After mapping genomic features of rice (GO annotation, subcellular localization prediction, and gene expression), we found that a well-annotated and biologically significant network is rich enough to capture many significant functional linkages within higher-order biological systems, such as pathways and biological processes. Furthermore, we took MADS-box domain-containing proteins and circadian rhythm signaling pathways as examples to demonstrate that functional protein complexes and biological pathways could be effectively expanded in our predicted network. The expanded molecular network in PRIN has considerably improved the capability of these analyses to integrate existing knowledge and provide novel insights into the function and coordination of genes and gene networks.     

血压昼夜节律特征及其分子调控机制

正常血压具有典型的昼夜节律特征。血压昼夜节律异常与高血压靶器官损害和心血管事件发生呈明显相关关系,是独立于血压水平的重要致病因素。血压昼夜节律的产生和维持与时钟基因的周期性表达有关。时钟基因bmal1、per2是体内生物钟系统运行的关键基因,其表达水平和节律变化直接调节血压的昼夜节律。     

血压昼夜节律特征及其分子调控机制

正常血压具有典型的昼夜节律特征。血压昼夜节律异常与高血压靶器官损害和心血管事件发生呈明显相关关系,是独立于血压水平的重要致病因素。血压昼夜节律的产生和维持与时钟基因的周期性表达有关。时钟基因bmal1、per2是体内生物钟系统运行的关键基因,其表达水平和节律变化直接调节血压的昼夜节律。     

浅谈海洋无脊椎动物的生物钟

一般动物(含人类)的生理活动和行为都有不同程度的周期性(periodicity)或节奏性(rhythemicity),而这些现象的表现并不一致:有的较明显,很易发觉(如昼夜垂直移动、体色变化等),而有的较隐蔽,不易发现(如视网膜色素移动等)。生物钟(biological clock)是受时间机制(timing mechanism)调节或控制的一种节奏性或周期性的生理活动(较为隐蔽)     

细菌生长自限、节律及宏大运动的研究

采用波动培养及显微培养技术实验研究细菌生长自限、节律及宏大运动的关系。分析了奇异变形杆菌生长节律性及自限产生的环境条件,自限细菌的形态特征及群体细菌宏大运动现象。结果表明细菌生长自限是群体细菌生长节律性及宏大运动的基础。     

Biological rhythm and emotional and behavioral problems among schoolchildren in Southern Brazil

Emotional and behavioral problems have been considered an indicative of mental disorder in children. Mental health problems affect 10–20% of children and adolescents living in low-income and middle-income countries. Evidence suggests that disruptions in the biological rhythm may be a primary cause of emotional and behavioral changes, which affects several psychological functions and moods. Thus, this study aimed at verifying the association between biological rhythm and emotional and behavioral problems in schoolchildren living in Southern Brazil. This is a cross-sectional study with a school-based sample conducted between August 2015 and November 2016. The presence of emotional and behavioral problems in children was verified by the Strengths and Difficulties Questionnaire (SDQ), parents’ version. This is a 25-item assessment questionnaire used to screen mental health problems in children and adolescents (from 4 to 17 years of age) in the last 6 months. The Biological Rhythm Interview of Assessment in Neuropsychiatry-Kids (BRIAN-K) was used to measure the degree of biological rhythm disruption. The BRIAN-K consists of 20 items; from among these, 17 items are added to generate a quantitative measure, with greater scores indicating more biological rhythm disruption. The final score can also be divided into four subscales: sleep, social rhythm, eating pattern and overall activities. A total of 609 children responded to the assessment instruments. With regard to parents or primary caregiver, 596 completed the assessment and 13 (2%) were not located or refused to participate in the study. Thus, 596 dyads were included in the analysis. Children with emotional and behavioral problems presented higher scores in all domains of BRIAN-K: sleep, social, activity, eating pattern and total score (p < 0.001). The following variables remained associated with emotional and behavioral problems after adjusted analysis: BRIAN-K total score (p < 0.001) and all subscales sleep (p < 0.001), social (p < 0.001), activity (p < 0.001) and eating pattern (p < 0.001). Children with emotional and behavioral problems presented higher biological rhythm disruption when compared with children without emotional and behavioral problems. Our study emphasizes the importance of biological rhythm and its influence on emotional and behavioral problems in schoolchildren. Early detection of any biological rhythm disruption may enhance further assessment of any eventual emotional and behavioral problem and even a psychopathology.     

Oviposition rhythm in Drosophila melanogaster is influenced by acetic acid

Fermenting fruit can contain acetic acid, a known attractant for fruit flies. Vinegar food induces a bimodal oviposition rhythm in Drosophila melanogaster, however non-vinegar (control) food induces a unimodal rhythm. The bimodal rhythm has a broad day mode showing variability in onset or pattern and a sharp dusk peak. The day mode may not be coupled to the dusk peak or to the 12L : 12D cycle because some flies show oviposition drifting. The day mode augments at the expense of the dusk mode, the latter diminishing within a few days. The unimodal expression on control food is a single dusk peak. Anticipation in the form of oviposition onset is shown by a few flies several hours before the light-off signal. On control food, a pulse of acetic acid fumes can induce a daytime oviposition. When pulsed twice in the day several hours apart two daytime modes are produced, thus leaving few eggs in the dusk mode. The experiments suggest that the fly is attracted to fruit by odours and oviposit rhythmically of a biological clock. If acetic acid is present in fermenting fruit oviposition is induced, thus overriding the clock.     

A possible second role for calmodulin in biological clock-controlled processes of euglena

The response of the Euglena gracilis (Klebs strain Z) photosynthesis circadian rhythm to three calmodulin antagonists was examined. In the presence of an antagonist, the photosynthetic reactions were uncoupled from the biological clock. Instead of the highly predictable rhythmic pattern characteristic of a biological clock-controlled circadian rhythm, the photosynthetic rate appears to be influenced by the light/dark cycle. The rate of O₂ evolution increases throughout the light portion of the cycle and does not decrease until the cells are exposed to darkness. Shortterm exposure to a calmodulin antagonist (2 hour pulses) failed to cause phase shifts in the timing of the rhythm. This suggests that calmodulin is not part of the clock controlling photosynthesis and that it has a clock-related role different from that reported for the cell division rhythm in Euglena.     

Daily fluctuations of peripheral metabolism of corticosterone in male Japanese quails: a dynamic approach to the development of plasma corticosterone daily rhythm

An ultradian rhythm was found in the daily variation of the parameters concerning the peripheral metabolism of corticosterone in sexually mature male Japanese quails. The period of this rhythm was eight hours; three peaks and minima were found in the daily fluctuation of metabolic clearance rata and an antiphysed rhythm in the biological half-life as well as in tetrahydrocorticosterone/corticosterone conversion rata. The findings emphasize the importance of the peripheral metabolism in developing of corticosterone plasma levels; and analyze the circadian rhythm of corticosterone plasma level as a result of secretion rate and peripheral disappearance.     

昼夜节律紊乱与胰岛β细胞缺陷关系的研究进展

生物的许多生命现象多有其固有的周期,呈现出昼夜节律、月节律和年节律性。昼夜节律是人类生命活动最普遍存在的一种节律形式,但这种节律周期可能被现代许多生活方式所破坏。人群流行病学和动物实验研究表明昼夜节律的紊乱与2型糖尿病的发病危险相关,但其机制尚未完全阐明。胰岛β细胞缺陷是2型糖尿病发生发展的必要机制,而昼夜节律紊乱与胰岛β细胞缺陷有一定关联。本文结合最新研究进展阐述昼夜节律紊乱与胰岛β细胞缺陷的相关性及其可能机制。     

Diversity of biological rhythm and food web stability

How ecosystem biodiversity is maintained remains a persistent question in the field of ecology. Here, I present a new coexistence theory, i.e. diversity of biological rhythm. Circadian, circalunar and circannual rhythms, which control short- and long-term activities, are identified as universal phenomena in organisms. Analysis of a theoretical food web with diel, monthly and annual cycles in foraging activity for each organism shows that diverse biological cycles play key roles in maintaining complex communities. Each biological rhythm does not have a strong stabilizing effect independently but enhances community persistence when combined with other rhythms. Biological rhythms also mitigate inherent destabilization tendencies caused by food web complexity. Temporal weak interactions due to hybridity of multiple activity cycles play a key role toward coexistence. Polyrhythmic changes in biological activities in response to the Earth''s rotation may be a key factor in maintaining biological communities.     

Chronomics analysis toolkit (CATkit)

Chronomics, and the study of biological rhythms, is a rapidly growing area of study. As biological researchers transition to awareness of the impact biological oscillators have on experimental outcomes, and the need to design experiments around genetic, molecular, physiological, and behavioral rhythms, there is increasing need to identify and characterize rhythmicity. There is a corresponding increase in demand for accessible software tools to analyze data for rhythms, both macroscopically and quantitatively. The chronomics analysis toolkit (CATkit), an R package for analysis of periodicities in time series, is a free and open source suite of rhythm analysis tools that runs on UNIX, Windows, and Macintosh platforms. It is particularly well suited to the often scarce, frequently noisy, biological data, and is also applicable to long and/or denser records. CATkit includes a variety of tools, providing visualization and inspection tools to aid in determining whether data meet key assumptions for analysis; as well as quantitative assessment, by cosinor, of mean, amplitude and phase at an assumed period (or periods), with a measure of uncertainty for each parameter.     

Modulation analysis of forced non-linear oscillators for biological modelling.

The synchronization of self-sustained oscillations by a forcing oscillation is of interest in a number of biological models. It has been considered for circadian rhythm modelling, heart-rate variability studies and forced breathing experiments. Outside the range of synchronization, conditions of almost-entrainment occur in which changes in amplitude and/or frequency are apparent. It is shown in this paper that such conditions can be analysed as modulation phenomena using the analytical method of harmonic balance. The degree of non-linearity in the self-sustained oscillation affects the nature of modulation, in that increasing distortion gives a trend towards frequency rather than amplitude modulation. The analytical results compare favourably with spectral analysis of simulated oscillators.     

The influence of light on circarhythms in humans

The present review discusses two types of biological rhythms, namely, circadian rhythms and circannual rhythms. Humans possess a circadian rhythm of approximately 24 hours, which is regulated by neural and hormonal processes. The synchronisation of this rhythm with the solar day and night is maintained through entrainment mainly by light. Dark environments completely lacking windows may have a negative effect on well-being and work capacity. During shift work the biological clock tends to maintain its normal 'diurnal' rhythm, which may lead to extreme tiredness and increased risk of accidents. Negative effects such as these may be partially alleviated by means of bright light during the night. During air travel across several time zones there is little time for the biological clock to adjust, but the resulting 'jet lag' may possibly be overcome by means of appropriately timed exposure to bright light. In countries situated far from the equator, the biological clock may become seriously disrupted during the short days of the dark season. Characterised by fatigue, sadness and sleep problems, these seasonal affective disorders may be cured or alleviated by means of regular periods outdoors, better lighting indoors, or, in the most serious cases, light therapy.     

Suprachiasmatic Nuclei May Regulate the Rhythm of Leptin Hormone Release in Syrian Hamsters (Mesocricetus Auratus)

The suprachiasmatic nuclei (SCN) generate the circadian rhythm of many hormones. The hormone leptin is a metabolic signal that informs the brain about fat and energy stores of the body. We investigated whether the rhythm of leptin hormone release in Syrian hamsters is directly controlled by the SCN. Three experiments were performed: in the first, hamsters were SCN‐lesioned; in the second, hamsters were exposed to different feeding regimes; and in the third, hamsters were adrenalectomized and implanted with cortisol capsules to maintain constant glucocorticoid release. Blood samples were collected before and after the experiments at different clock times and examined for leptin levels by enzyme‐linked immunosorbant assay (ELISA). Different feeding regimes and constant glucocorticoid release did not alter the rhythm of leptin release; whereas, SCN lesions abolished the rhythm. The results of the present study suggest the rhythm in leptin release in Syrian hamsters may be controlled by the SCN.     

Suprachiasmatic nuclei may regulate the rhythm of leptin hormone release in Syrian hamsters (Mesocricetus auratus)

The suprachiasmatic nuclei (SCN) generate the circadian rhythm of many hormones. The hormone leptin is a metabolic signal that informs the brain about fat and energy stores of the body. We investigated whether the rhythm of leptin hormone release in Syrian hamsters is directly controlled by the SCN. Three experiments were performed: in the first, hamsters were SCN-lesioned; in the second, hamsters were exposed to different feeding regimes; and in the third, hamsters were adrenalectomized and implanted with cortisol capsules to maintain constant glucocorticoid release. Blood samples were collected before and after the experiments at different clock times and examined for leptin levels by enzyme-linked immunosorbant assay (ELISA). Different feeding regimes and constant glucocorticoid release did not alter the rhythm of leptin release; whereas, SCN lesions abolished the rhythm. The results of the present study suggest the rhythm in leptin release in Syrian hamsters may be controlled by the SCN.