Genetic diversity and structure of blue whales (Balaenoptera musculus) in Australian feeding aggregations

The worldwide distribution of blue whales (Balaenoptera musculus) has not prevented this species from becoming endangered due to twentieth century whaling. In Australia there are two known feeding aggregations of blue whales, which most likely are the pygmy subspecies (B. m. brevicauda). It is unknown whether individuals from these feeding aggregations belong to one breeding stock, or multiple breeding stocks that either share or occupy separate feeding grounds. This was investigated using ten microsatellite loci and mitochondrial DNA control region sequences (N = 110). Both sets of markers revealed no significant genetic structure, suggesting that these whales are likely to belong to the same breeding stock.     

Developmental changes in the skull morphology of common minke whales Balaenoptera acutorostrata

We investigated growth‐related and sex‐related morphological changes in the skulls of 144 North Pacific common minke whales Balaenoptera acutorostrata. Measurement was conducted at 39 points on the skull and mandible to extract individual allometric equations relating the length and zygomatic width of the skull. The results revealed no significant differences in skull morphology by sex except for width of occipital bone. The size relative to the skull of the anatomical parts involved in feeding, such as the rostrum and mandible, increased after birth. In contrast, the sensory organs and the anatomical regions involved in neurological function, such as the orbit, tympanic bullae, and foramen magnum, were fully developed at birth, and their relative size reduced over the course of development. This is the first study to investigate developmental changes in the skull morphology using more than 100 baleen whale specimens, and we believe the results of this study will contribute greatly to multiple areas of baleen whale research, including taxonomy and paleontology. J. Morphol. 275:1113–1121, 2014. © 2014 Wiley Periodicals, Inc.     

Cetaceans evolution: insights from the genome sequences of common minke whales

Background

Whales have captivated the human imagination for millennia. These incredible cetaceans are the only mammals that have adapted to life in the open oceans and have been a source of human food, fuel and tools around the globe. The transition from land to water has led to various aquatic specializations related to hairless skin and ability to regulate their body temperature in cold water.

Results

We present four common minke whale (Balaenoptera acutorostrata) genomes with depth of ×13 ~ ×17 coverage and perform resequencing technology without a reference sequence. Our results indicated the time to the most recent common ancestors of common minke whales to be about 2.3574 (95% HPD, 1.1521 – 3.9212) million years ago. Further, we found that genes associated with epilation and tooth-development showed signatures of positive selection, supporting the morphological uniqueness of whales.

Conclusions

This whole-genome sequencing offers a chance to better understand the evolutionary journey of one of the largest mammals on earth.

Electronic supplementary material

The online version of this article (doi:10.1186/s12864-015-1213-1) contains supplementary material, which is available to authorized users.     

Molecular evidence of new variant Brucella in North Pacific common minke whales

Brucella, a causative agent of brucellosis, has been isolated recently from a variety of marine mammals. The molecular analysis of marine mammalian Brucella strains, without manifest pathology of brucellosis in the eastern North Atlantic, showed that they are distinct from terrestrial Brucella species. Previously, we reported abnormal gonads in common minke whales (Balaenoptera acutorostrata) in the western North Pacific and suggested the presence of Brucella infection in the whales in pathology and serology studies. In the present study, using polymerase chain reaction (PCR), Brucella was detected in granular testes of the whales showing caseation or calcification. The insertion of an IS711 transposable element specific for marine mammal isolates as well as a seal isolate-specific DNA fragment were also found. Molecular characterization of Brucella based on sequence analysis of the PCR products amplified from the outer membrane protein (omp) 2 gene showed that the Brucella from North Pacific common minke whales was different from terrestrial and North Atlantic marine mammal Brucella strains. The North Pacific Brucella showed the highest similarity to North Atlantic seal strains among the known Brucella strains.     

Chimeric structure of omp2 of Brucella from Pacific common minke whales (Balaenoptera acutorostrata)

In the Pacific common minke whale (Balaenoptera acutorostrata ), a new variant of Brucella has been detected using the polymerase chain reaction. Detailed analysis of the porin protein genes, omp2a and omp2b from the whale Brucella showed that these two genes have some motifs in common with Atlantic marine strains in the 5'-terminal one-third region. On the other hand, the nucleotide sequences in the 3'-terminal two-thirds region of the two genes were almost identical to the respective genes of terrestrial strains. Thus, Pacific whale Brucella omp2 genes are chimeras between marine and terrestrial strains.     

Population structure of common juniper in the Cis-Urals and Southern Urals

The population structure of common juniper (Juniperus communis L.) growing in the Cis-Urals and Southern Urals has been studied using 17 morphological traits of generative and vegetative organs. A multivariate analysis of ten coenopopulations has recognized three phenotypically different local populations: Cis-Ural, forest Cis-Ural forest-steppe, and Southern Ural mountain populations. The Cis-Ural forest population is strictly associated with lowland pine forests of the northwestern part of the Bashkir Cis-Urals. The Cis-Ural forest-steppe population is located in the northwestern part of the Bashkir Cis-Urals and the southeastern part of the Udmurt Cis-Urals. The Southern Ural mountain population is located in the central part of the Southern Urals and is associated mainly with mountain pine and dark coniferous forests. The last population is divided into forest and forest-edge subpopulations; the first one is represented by typical undergrowth locations, whereas the second is associated with open steppelike slopes and forest edges. In general, based on morphological traits of generative organs, the revealed local subpopulations hold an intermediate position between the Eastern European and Siberian populations of common juniper. Based on the morphological traits of vegetative organs, Cis-Ural populations are considered related to the populations of the European part of Russia, whereas the mountain Southern Ural population resemble Siberian populations. Concerning morphological traits of generative organs, the intrapopulation phenotypic diversity of common juniper is higher for mountain habitats; in the case of vegetative organs, the maximum diversity is observed for lowland habitats. The character of phenotypic differentiation determines the need to conserve the gene pool of common juniper of the Cis-Urals and southern Urals on a population basis.     

Population structure and phylogeography of the short-tailed stingray, Dasyatis brevicaudata (Hutton 1875), in the Southern Hemisphere

There is accumulating evidence that the degree of vagility explains little of the extent of population subdivision found within elasmobranch species. Instead, patterns of gene flow in elasmobranchs appear more closely linked to the presence of dispersal barriers, either physical or biological. Here, we investigate the potential role of some of these isolating mechanisms in shaping the population structure of a member of the stingray family Dasyatidae (Dasyatis brevicaudata) at various scales (southern hemisphere vs. coastal New Zealand). Analyses of the mitochondrial DNA control region from 176 individuals revealed significant genetic structure between South Africa, Australia, and New Zealand populations (analysis of molecular variance [AMOVA], overall Ф(ST) = 0.67, P < 0.001), although New Zealand and Australia shared some haplotypes. Surprisingly, significant population differentiation was found among several coastal New Zealand locations (AMOVA, overall Ф(ST) = 0.05, P < 0.05). However, data did not support the genetic differentiation between individuals from an offshore breeding area and mainland individuals. Comparisons suggest that these stingrays exhibit similar levels of population differentiation as other coastal elasmobranchs, with high divergence across oceanic basins and lower differentiation along continuous coastal habitats. Differences in coastal population structuring in elasmobranch species studied to date may be attributed to species-specific preferences for coastal habitats, which may be linked to life history functions (e.g., feeding and pupping).     

Trophic level and fatty acids in harp seals compared with common minke whales in the Barents Sea

The objectives of this study were to explore trophic levels and possible diet overlap between harp seals (Pagophilus groenlandicus) and common minke whales (Balaenoptera acutoroostrata) in the Barents Sea using stable isotopes of nitrogen (δ¹⁵N) and carbon (δ¹³C) and fatty acid analyses, and to explore the energy pathways from the plankton to the top predators. Blubber and muscle samples from 93 harp seals and 20 minke whales were collected in the southern Barents Sea in May 2011. The study showed that harp seals were at a higher trophic level than minke whales during spring. This supported previous diet studies suggesting a more fish-dominant diet for seals, as compared with the whales, at this time of the year. The stable isotopes and fatty acids indicated niche separation between the seals and the whales, and between different age groups of the harp seals. Older seals had fatty acid profiles more equal to minke whales as compared with younger seals. Furthermore, while the fatty acid profiles suggested that krill were of particular importance for the young seals, the profiles from older seals and whales suggested that fish dominated their diets.     

Population size and migratory connectivity of humpback whales wintering in Las Perlas Archipelago,Panama

From 2003 to 2009, we surveyed Las Perlas Archipelago off the Pacific coast of Panama 53 times between the months of August and October to estimate abundance of humpback whales and to test for a migratory connection with populations from the southern hemisphere. We identified 295 individuals using photo‐identification of dorsal fins, including 58 calves, and the population estimate for a single season was 100–300 solitary adults plus 25–50 mothers with calves; the estimated population of animals across all seasons using a mark and recapture model was over 1,000. Eight of the 139 fluke identifications were matched to whales in photograph catalogues from the Antarctic Peninsula and a ninth was matched to a whale sighted in Chilean waters; four of these nine individuals have also been sighted in Colombia. We conclude that Panama (Las Perlas Archipelago in particular) is an important calving area for humpback whales in the Southern Hemisphere. These data should provide a foundation for monitoring of population change and to increase awareness in Panama about the need to manage vessel traffic and tourism related to the whales at Las Perlas.     

Food and daily food consumption of southern minke whales in the Antarctic

Summary The stomach contents of 273 southern minke whales (Balaenoptera acutorostrata) taken in the region 55°S to the ice-edge and between 105°E and 115°E by a Japanese survey during 1987/88 were examined. The minke whales' dominant feeding ground coincided with a distinctive hydrographic front in the vicinity of the ice-edge at the mouth of Vincennes Bay. Krill (Euphausia superba) were the dominant food species comprising 100% and 94% by weight of stomach contents in the ice-edge and offshore zones, respectively. In the offshore zone, minke whales tend to feed on E. superba rather than Thysanoessa macrura, which is found more frequently than the former in net samples. Total food consumption by minke whales per day was estimated to be 1170 t (22.1 kg/km²) and 596 t (2.0 kg/km²) in the ice-edge and offshore zones, respectively. Feeding activity peaked in the early morning in the ice-edge zone, whereas it occurred irregularly throughout the day in the offshore zone. Two size modes of krill (25–28 mm in body length (1 year-old) and 41–48 mm (3–4 year-old)) dominated the diet. Although the former was numerically more abundant, the latter dominated the diet by weight, suggesting that larger krill are more important food for minke whales. Observed spatial pattern of krill populations in the study region suggests that movement of the subsurface cold water mass tended to carry krill offshore from the ice-edge.The earlier version of this paper was submitted to the 42nd Meeting of the Scientific Committee of International Whaling Commission as SC/42/SHM; 34.     

Past and present distribution, densities and movements of blue whales Balaenoptera musculus in the Southern Hemisphere and northern Indian Ocean

• 1 Blue whale locations in the Southern Hemisphere and northern Indian Ocean were obtained from catches (303 239), sightings (4383 records of ≥8058 whales), strandings (103), Discovery marks (2191) and recoveries (95), and acoustic recordings.
• 2 Sighting surveys included 7 480 450 km of effort plus 14 676 days with unmeasured effort. Groups usually consisted of solitary whales (65.2%) or pairs (24.6%); larger feeding aggregations of unassociated individuals were only rarely observed. Sighting rates (groups per 1000 km from many platform types) varied by four orders of magnitude and were lowest in the waters of Brazil, South Africa, the eastern tropical Pacific, Antarctica and South Georgia; higher in the Subantarctic and Peru; and highest around Indonesia, Sri Lanka, Chile, southern Australia and south of Madagascar.
• 3 Blue whales avoid the oligotrophic central gyres of the Indian, Pacific and Atlantic Oceans, but are more common where phytoplankton densities are high, and where there are dynamic oceanographic processes like upwelling and frontal meandering.
• 4 Compared with historical catches, the Antarctic (‘true’) subspecies is exceedingly rare and usually concentrated closer to the summer pack ice. In summer they are found throughout the Antarctic; in winter they migrate to southern Africa (although recent sightings there are rare) and to other northerly locations (based on acoustics), although some overwinter in the Antarctic.
• 5 Pygmy blue whales are found around the Indian Ocean and from southern Australia to New Zealand. At least four groupings are evident: northern Indian Ocean, from Madagascar to the Subantarctic, Indonesia to western and southern Australia, and from New Zealand northwards to the equator. Sighting rates are typically much higher than for Antarctic blue whales.
• 6 South‐east Pacific blue whales have a discrete distribution and high sighting rates compared with the Antarctic. Further work is needed to clarify their subspecific status given their distinctive genetics, acoustics and length frequencies.
• 7 Antarctic blue whales numbered 1700 (95% Bayesian interval 860–2900) in 1996 (less than 1% of original levels), but are increasing at 7.3% per annum (95% Bayesian interval 1.4–11.6%). The status of other populations in the Southern Hemisphere and northern Indian Ocean is unknown because few abundance estimates are available, but higher recent sighting rates suggest that they are less depleted than Antarctic blue whales.

     

A new species of Phaeohelotium from Nothofagus forests in Argentina and Chile, with a key to the Southern Hemisphere species

Phaeohelotium nothofagi, sp.nov., found on fallen wood and leaves of Nothofagus dombeyi, is described and illustrated. The fungus is characterized by pale yellow discs, and fumose ascospores with asperulate walls. A key with distributional data for the five species of the genus now known in the Southern Hemisphere is provided.     

Zinc,cadmium, mercury and selenium in minke whales,belugas and narwhals from West Greenland

Summary Samples of muscle, liver and kidney from 24 minke whales (Balaenoptera acutorostrata), 43 belugas (Delphinapterus leucas), and 98 narwhals (Monodon monoceros) were analyzed for zinc, cadmium, mercury, and selenium. Highly significant age accumulation of mercury was found. A lower level of significance of age accumulation of cadmium in belugas and narwhals is probably due to the fact that some of the highest cadmium concentrations are in subadults and young adults. The maximum concentrations of cadmium and mercury are very high: 1.68, 73.7, and 125 g cadmium, and 9.88, 42.8, and 4.61 g mercury per g wet weight of narwhal muscle, liver and kidney, respectively. The cadmium concentrations are correlated in the three organs, as are mercury and to a lesser extent selenium concentrations. The concentrations of mercury and selenium in liver are highly correlated.     

Molecular evidence for long distance dispersal across the Southern Hemisphere in the Ganoderma applanatum-australe species complex (Basidiomycota)

We examined phylogeographic relationships in the cosmopolitan polypore fungus Ganoderma applanatum and allies, and conservatively infer a possible age of origin for these fungi. Results indicate that it is very unlikely that members of this species complex diversified before the break-up of Gondwana from Laurasia ca 120 M years ago, and also before the final separation of the Gondwanan landmasses from each other that was achieved about 66 M years ago. An earliest possible age of origin of 30 M years was estimated from nucleotide substitution rates in the 18S rDNA gene. Phylogenetic reconstruction of a worldwide sampling of ITS rDNA sequences reveals at least eight distinct clades that are strongly correlated with the geographic origin of the strains, and also correspond to mating groups. These include one Southern Hemisphere clade, one Southern Hemisphere–Eastern Asia clade, two temperate Northern Hemisphere clades, three Asian clades, and one neotropical clade. Geographically distant collections from the Southern Hemisphere shared identical ITS haplotypes, and an ITS recombinant was noted. Nested clade analysis of a parsimony network among isolates of the Southern Hemisphere clade indicated restricted gene flow with isolation-by-distance among the New Zealand, Australia–Tasmania, Chile–Argentine, and South Africa populations, suggesting episodic events of long-distance dispersal within the Southern Hemisphere. This study indicates that dispersal bias plays a more important role than generally admitted to explain the Southern Hemisphere distribution of many taxa, at least for saprobic fungi.