Major histocompatibility genes in the Lake Tana African large barb species flock: evidence for complete partitioning of class II B, but not class I, genes among different species

The 16 African large barb fish species of Lake Tana inhabit different ecological niches, exploit different food webs and have different temporal and spatial spawning patterns within the lake. This unique fish species flock is thought to be the result of adaptive radiation within the past 5 million years. Previous analyses of major histocompatibility class II B exon 2 sequences in four Lake Tana African large barb species revealed that these sequences are indeed under selection. No sharing of class II B alleles was observed among the four Lake Tana African large barb species. In this study we analysed the class II B exon 2 sequences of seven additional Lake Tana African large barb species and African large barbs from the Blue Nile and its tributaries. In addition, the presence and variability of major histocompatibility complex class I UA exon 3 sequences in six Lake Tana and Blue Nile African large barb species was analysed. Phylogenetic lineages are maintained by purifying or neutral selection on non-peptide binding regions. Class II B intron 1 and exon 2 sequences were not shared among the different Lake Tana African large barb species or with the riverine barb species. In contrast, identical class I UA exon 3 sequences were found both in the lacustrine and riverine barb species. Our analyses demonstrate complete partitioning of class II B alleles among Lake Tana African large barb species. In contrast, class I alleles remain for the large part shared among species. These different modes of evolution probably reflect the unlinked nature of major histocompatibility genes in teleost fishes.Electronic Supplementary Material Supplementary material is available for this article at .An erratum to this article can be found at     

Ostracods (Ostracoda,Crustacea) from two freshwater lakes near Maarssen,The Netherlands

Summary In Lake Maarsseveen I (with the lowest trophic level) 15 ostracod species were collected, whereas 9 species were found in Lake Maarsseveen II.Physocypria kliei Schäfer, 1934, andCypridopsis obesa Brady and Robertson, 1869, are new to the Dutch fauna.     

Characterization of two <Emphasis Type="Italic">Synodontis</Emphasis> (Siluriformes: Mochokidae) catfish species in the White Nile and Lake Nubia

I found that cluster analysis of body weight, 25 morphometric measurements and seven meristic counts separated most of the population of Synodontis schall, from the Jebel Aulia area, Khartoum along the White Nile, from the population of Lake Nubia, the southern part of a large reservoir on the River Nile at the northern borders of the Sudan, above the Aswan High Dam in Egypt. Analysis of variance revealed significantly higher mean numbers of gill rakers and mandibular teeth in Lake Nubia for S. schall and S. serrata, compared to the two species in the White Nile. Higher numbers of anal fin rays were also found in S. serratus from Lake Nubia compared to the White Nile. Females of both species exhibited isometric growth in the White Nile and allometric growth in Lake Nubia. Females of S. schall and both sexes of S. serrata in Lake Nubia had higher condition factors compared to individuals in the White Nile. I detected differences in allele frequency of nine out of 17 loci between the populations of the two localities. The average heterozygosity values were lower for the two species from Lake Nubia compared to both species in the White Nile. The inter-population genetic distance was 0.02 for both species. This study should be applied to other species in Lake Nubia for rational fishery management and aquaculture.     

Four new species of Gomphocythere (Crustacea, Ostracoda) from Lake Tanganyika, East Africa

Four new species of the ostracod genus Gomphocythere are described from Lake Tanganyika (East Africa): Gomphocythere downingi n. sp. G. coheni n. sp., G. wilsoni n. sp., and G. woutersi n. sp. All species are endemic to the lake and are found within a variety of substrates and depths. The addition of these four new species brings the total number of endemic Gomphocythere species in Lake Tanganyika to nine. Other Gomphocythere species are known from water bodies throughout East and South Africa and in the Levant. Brooding is an important, but not a unique, preadaptation for the persistence and taxic prolific speciation of this lineage in Lake Tanganyika.     

TWO NEW SPECIES OF PSEUDOKEPHYRION (CHRYSOPHYCEAE) IN THE PLANKTON OF A LAKE1

Two new species of Pseudokephyrion are described from Little Aurora Lake, Ontario, Canada. The distribution of both P. taeniatum sp. nov. and P. auroreum sp. nov. is restricted, for reasons which are not clear; neither species was found in samples from lakes adjacent to Little Aurora Lake. All lakes in the vicinity are very dilute, oligotrophic and acidic.     

Reproductive potential of the Nile perch,Lates niloticus L. and the establishment of the species in Lakes Kyoga and Victoria (East Africa)

The size at first maturity, sex ratio and fecundity of L. niloticus in Lake Kyoga have been examined, and compared with the situation in other aquatic systems. The species has the ability to reproduce enormously. It produces up to 16 million eggs. In Lake Kyoga, fecundity (F) increases with length (L) in cm according to the equation: % MathType!MTEF!2!1!+-% feaafiart1ev1aaatCvAUfeBSjuyZL2yd9gzLbvyNv2CaerbuLwBLn% hiov2DGi1BTfMBaeXatLxBI9gBaerbd9wDYLwzYbItLDharqqtubsr% 4rNCHbGeaGqiVu0Je9sqqrpepC0xbbL8F4rqqrFfpeea0xe9Lq-Jc9% vqaqpepm0xbba9pwe9Q8fs0-yqaqpepae9pg0FirpepeKkFr0xfr-x% fr-xb9adbaqaaeGaciGaaiaabeqaamaabaabaaGcbaGaciOraiaac2% dacaGGGaGaaiinaiaac6cacaGG0aGaai4maiaacAdacaGGGaGaaiiE% aiaacccacaGGXaGaaiimamaaCaaaleqabaGaaiylaiaacAdaaaGcca% GGmbWaaWbaaSqabeaacaGGYaGaaiOlaiaacMdacaGGYaaaaaaa!44D8!\[\operatorname{F} = 4.436 x 10^{ - 6} L^{2.92} \]Information from different habitats shows that females grow to a larger size than males but the growth rate is the same in both sexes. Males mature earlier than females at 50–65 cm total length with females maturing between 60–95 cm. There are about twice as many males as females. The rapid establishment of L. niloticus in Lake Kyoga and the Nyanza Gulf of Lake Victoria following its introduction is attributed to the high reproductive potential of the species under favourable environmental conditions.     

An annotated checklist of the fish fauna of the river systems draining the Kahuzi-Biega National Park (Upper Congo: Eastern DR Congo)

The Kahuzi-Biega National Park (KBNP), situated mainly in the Eastern Highlands Ecoregion of the Upper Congo basin, is drained by the Lowa and Ulindi rivers, and some western affluents of Lake Kivu. In this study, the first list of the fish diversity of these systems is provided based on museum collections and complemented, for the Lowa River system and the western Lake Kivu affluents, with recently collected specimens (2013–2017). A total of 118 species are reported from the Lowa basin, 22 from the Ulindi basin and seven from these Lake Kivu affluents. Within the Lowa and Ulindi, respectively, five and one species, all cichlids, have been introduced. Currently, 51 species are reported from within the park, only two of which have been reported from the highlands, i.e., Amphilius kivuensis from the Luha, the source of the Luka River, and Clarias liocephalus from the headwaters of the Lake Kivu’ affluents. With a total of 30 species, Cyprinidae is by far the largest family, representing 25% of the total species diversity of the Lowa basin. It is followed by Mormyridae with 13 species (11%), Alestidae and Mochokidae with 10 species each (8%), Clariidae and Amphiliidae with eight species (7%), and Distichodontidae with six species (5%). Seven new species for science were discovered and 11 species were found to be endemic to the Lowa system. Although further exploration is needed, this underscores the importance of the KBNP in protecting the fish fauna of the Lowa basin but also highlights the park's limited coverage of the fish fauna of the Lowa basin.     

Occurrence of the endangered species Nitellopsis obtusa (Charales,Charophyceae) in western Japan and the genetic differences within and among Japanese populations

Nitellopsis obtusa (Charales, Charophyceae) are widely distributed from Europe to Asia; however, this species has been recorded in only the five lakes in central Honshu in Japan. This species was thought to be extinct in Japan, but was rediscovered in limited areas of Lake Kawaguchi in central Honshu. More recently, we discovered more Japanese populations of N. obtusa in Lake Biwa in western Honshu, and it became clear that the species had a broader distribution in Japan than originally believed. In addition, although only male or female thalli have been collected at each lake, both male and female thalli were found from Lake Biwa. This is the first report of a potentially sexual population of N. obtusa in Japan. The DNA sequences of three chloroplast DNA markers, including both coding and non‐coding regions, were identical in all specimens from Lake Kawaguchi and Lake Nojiri (Central Honshu), and differed from those of Lake Biwa and German specimens. Although Japanese and German specimens were genetically similar, Japanese specimens displayed considerable genetic diversity according to locality.     

The Radiation of Hydrobioid Gastropods (Caenogastropoda, Rissooidea) in Ancient Lake Poso, Sulawesi

A survey of the fauna of hydrobioid gastropods living in ancient Lake Poso in Sulawesi revealed a total of 16 species, 14 of them new, belonging to two genera, Sulawesidrobia and Keindahan gen. nov. Most species occurred on hard substrates, water plants or rootlets of trees. Since only the upper 0.5 m of the lake have been sampled, many more species probably remain to be discovered. Already, Lake Posoȁ9s fauna ranks among the four most diverse hydrobioid lake faunas worldwide. The Sulawesi lakes including Lake Poso and the Malili Lakes are the only lakes where sizeable radiations of hydrobioid and cerithioid gastropods coexist. Outside Lake Poso, hydrobioid gastropods have not been investigated so far apart from a single species reported from Lake Lindoe similar to or identical with S. bonnei [Abbott, 1945. Occasional Papers on Mollusks 1: 1–4], which has its type locality in Lake Poso and may in fact be a complex of species. Therefore endemicity in Lake Poso cannot be estimated nor is it possible to say, whether the radiation is of lacustrine origin. The introduction of alien fish has had a severe impact on the native fish fauna. The impact on the invertebrate fauna is not known but chances are that this survey based on collections from 1991 no longer reflects the original assemblage in the lake.     

Molecular phylogenetic investigations of the Viviparidae (Gastropoda: Caenogastropoda) in the lakes of the Rift Valley area of Africa

The freshwater gastropod family Viviparidae is nearly cosmopolitan, but absent from South America. On the African continent, two genera are recognized; the widespread Bellamya and the monotypic Neothauma, which is confined to Lake Tanganyika. Most of the African Bellamya species are confined to the major lakes of the Rift Valley area in Africa, i.e. Lake Albert, Lake Malawi, Lake Mweru, and Lake Victoria. The phylogenetic analyses of mitochondrial (COI and 16S) and nuclear (H3, 18S and 28S) DNA inferred three major lake-clades; i.e. Lake Victoria/Kyoga/Albert, Lake Malawi and Lake Mweru/Bangweulu. The endemic B. rubicunda from Lake Albert and B. unicolor from Lake Kyoga were inferred to be part of the Lake Victoria clade. Bellamya capillata as identified by shell characters was polyphyletic in gene trees. The monophyletic Bellamya species radiation in Lake Malawi was most nearly related to the Lake Victoria/Kyoga/Albert-clade. Taxa from the Zambian lakes, Mweru and Bangweulu, were inferred together and placed ancestral to the other lakes. Neothauma tanganyicense was inferred as the sister-group to the Zambian Bellamya. Within the lake-clades the endemic radiations show very low genetic diversities (0–4.1% in COI), suggesting much faster morphological divergence than molecular divergence. Alternatively, Bellamya in Africa constitutes only a few species with several sub-species or eco-phenotypic morphs. The African viviparids were inferred to be the sister-group to a clade comprising Asian species, and the relatively low genetic diversity between the clades (12.6–15.5% in COI) makes a recent Miocene dispersal event from Asia to Africa much more likely than an ancient Gondwana vicarience distribution.     

The importance of cytotaxonomy in understanding the biogeography of African rodents: Lake Chad murids as an example

1. Due to the existence of numerous morphologically sibling species among African rodent genera, cytogenetical analyses are essential for correct taxonomic identifications. As an illustration, karyotypes of rodents captured in the Lake Chad area were systematically conducted, to determine them unambiguously. 2. Thirteen species were found, giving a list of at least 18 species in total for the whole Lake Chad region when previously published data were critically re‐examined. Gerbilline rodents dominate in this Sahelian region, with five species of Gerbillus, four of Taterillus, two of Tatera and Desmodilliscus braueri, and six species of murine rodents were also counted. Moreover, two species of Taterillus appeared characterized by unique and hitherto unknown karyotypes, and undoubtedly represent new species. 3. The Lake Chad area, although poorly studied from a biogeographical point of view, occupies a central position in the northern half of Africa which makes its zoogeographical affinities interesting to evaluate. Analysis of the biogeographical characteristics of the rodent species recorded here leads to the conclusion that the murid rodent community of the Lake Chad region is of mixed origin, with a dominant West African component. However, the presence of two species considered as endemics (Mastomys verheyeni and Taterillus lacustris), combined with our discovery of two new chromosomal species of Taterillus, suggest that this region may have acted as a centre of differentiation in relatively recent times, perhaps reflecting the extensive variations of the Lake Chad basin associated with Plio‐Pleistocene cycles of transgression–regression. 4. Without chromosomal data, most of these findings would have remained weakly supported, or even undiscovered, as between five and eight species could have been overlooked.     

Extremely halophilic Archaea from Tuz Lake,Turkey, and the adjacent Kaldirim and Kayacik salterns

Tuz Lake is a hypersaline lake located in Central Anatolia, Turkey. The lake and its salterns, Kaldirim and Kayacik, are the major sources of solar salt for industrial applications in Turkey, especially in the food and leather industries. Use of the crude solar salt often results in microbial deterioration of the products. We therefore initiated a thorough characterization of the microbial communities in Tuz Lake and its adjacent salterns, and we present here the results of investigations on diversity of extremely halophilic Archaea. Twenty-seven colonies of aerobic red or pink Archaea (family Halobacteriaceae) were selected according to colony shape, size, consistency and pigmentation, and characterized according to their phenotypic characteristics, polar lipid contents, and antibiotic sensitivities. Furthermore, 16S rRNA genes of the isolates were screened by DGGE analysis and partially sequenced. Phylogenetic analysis showed that most isolates belonged to the genera Haloarcula, Halorubrum and Halobacterium. Haloarcula was found to be dominant both in Tuz Lake and in the saltern samples. Halorubrum species were isolated from Tuz Lake and from the Kaldirim saltern, and Halobacterium species were recovered from Tuz Lake and from the Kayacik saltern. All strains showed various activities of hydrolytic enzymes (proteases, amylases, cellulases, and others), activities which are responsible for the detrimental effects of the crude salt in food and leather products.     

Where ichthyofaunal provinces meet: the fish fauna of the Lake Edward system,East Africa

Based on literature, museum collections and three recent expeditions, an annotated species list of the Lake Edward, East Africa, drainage system is presented, excluding the endemic haplochromines. A total of 34 non-Haplochromis species belonging to 10 families and 21 genera are recorded from the system. Three of these are endemic and two others have been introduced in the region. Six species are new records for the Lake Edward system. A species accumulation curve indicates that we probably covered most of the non-Haplochromis species in the area sampled during the recent expeditions, but undetected species might still be present in the Congolese part of the system, which is poorly sampled. A comparison of the species list with those of neighbouring basins confirmed the placement of the Lake Edward system within the east-coast ichthyofaunal province.     

Structural genomic variation leads to genetic differentiation in Lake Tanganyika's sardines

Identifying patterns in genetic structure and the genetic basis of ecological adaptation is a core goal of evolutionary biology and can inform the management and conservation of species that are vulnerable to population declines exacerbated by climate change. We used reduced‐representation genomic sequencing methods to gain a better understanding of genetic structure among and within populations of Lake Tanganyika's two sardine species, Limnothrissa miodon and Stolothrissa tanganicae. Samples of these ecologically and economically important species were collected across the length of Lake Tanganyika, as well as from nearby Lake Kivu, where L. miodon was introduced in 1959. Our results reveal differentiation within both S. tanganicae and L. miodon that is not explained by geography. Instead, this genetic differentiation is due to the presence of large sex‐specific regions in the genomes of both species, but involving different polymorphic sites in each species. Our results therefore indicate rapidly evolving XY sex determination in the two species. Additionally, we found evidence of a large chromosomal rearrangement in L. miodon, creating two homokaryotypes and one heterokaryotype. We found all karyotypes throughout Lake Tanganyika, but the frequencies vary along a north–south gradient and differ substantially in the introduced Lake Kivu population. We do not find evidence for significant isolation by distance, even over the hundreds of kilometres covered by our sampling, but we do find shallow population structure.     

Phylogenetic investigations on the haplochromine Cichlidae of Lake Kivu (East Africa), based on lepidological characters*

The phylogeny of the haplochromine cichlids of Lake Kivu was studied using lepidological characters. Only one species, Haplochromis astatodon was found to have a closer relationship to a group outside Lake Kivu, namely Haplochromis sensu stricto. The other 14 species form a monophyletic lineage that is part of a subdivision in the large Lake Victoria-Edward-Kivu flock. The internal phylogeny of this lineage was resolved to the species level.     

Incidence of lamprey marks on Lake Sturgeon (Acipenser fulvescens Rafinesque, 1817) in the St. Clair – Detroit River System: Implications for Sea Lamprey (Petromyzon marinus Linnaeus, 1758) effects

Laurentian Great Lakes Lake Sturgeon (Acipenser fulvescens) are hosts to lamprey species, including native Silver Lamprey (Ichthyomyzon unicuspis) and invasive Sea Lamprey (Petromyzon marinus). Silver Lamprey coevolved with Lake Sturgeon and cause negligible mortality, but Sea Lamprey can negatively affect Lake Sturgeon populations. Sea Lamprey abundance in Lake Erie has been above targets set by resource managers, with the St. Clair – Detroit River System (SCDRS) suspected as a source of Sea Lamprey production into Lake Erie. This study summarizes lamprey marking on Lake Sturgeon captured during agency assessment surveys in the SCDRS since 1996 and provides insight on the potential for Sea Lamprey to negatively affect Lake Sturgeon in the SCDRS. Lamprey marks (any lamprey species) were noted on 48.2% of Lake Sturgeon (2.5 marks/fish) and 3.3% of Lake Sturgeon assumed to be susceptible to mortality by Sea Lamprey (<760 mm TL; 0.06 marks/fish). Silver Lamprey were the only lamprey species found attached to Lake Sturgeon and there was no difference between oral disc diameters of Silver Lamprey and marks measured on Lake Sturgeon in Lake St. Clair and the lower St. Clair River (p = .45). Based on logistic regression, probability of at least one lamprey mark increased with Lake Sturgeon total length and was highest in Lake St. Clair. The probability of observing at least one lamprey mark on a 760 mm Lake Sturgeon was 8.1% or less for each sampling location in the SCDRS aside from Lake St. Clair (28.1%). Results suggest that parasitism of Lake Sturgeon by Sea Lamprey in the SCDRS is rare, particularly for Lake Sturgeon <760 mm TL. Low incidence of lamprey marks on Lake Sturgeon assumed to be susceptible to mortality from Sea Lamprey parasitism and zero occurrence of Sea Lamprey being observed attached to a Lake Sturgeon suggest Sea Lamprey at their current abundance likely have little effect on the Lake Sturgeon population in the SCDRS. Caution should be taken when using mark size to assign marks to lamprey species as there is substantial overlap among species oral disc diameters, potentially inflating the perceived impact of Sea Lamprey on Lake Sturgeon in areas with native lampreys.     

The calanoid copepods of the Nile system

At least 11 or 12 calanoid taxa occur in the Nile system. One species is typical of the river and of Lake Chad (Th. galebi); two are restricted to Lake Victoria (Th. galeboides, T. stuhlmanni), but both might be only subspecies to more widespread species. One is restricted to Lakes Edward and George (T. worthingtoni) but is a little known species. No calanoids are on record from Lakes Albert and Kyoga, while the species reported from Lake Turkana (T. banforanus) is out of range, and almost certainly represents an erroneous record. Among the remaining species, four are East-African, ranging from the southern tip of the continent to the Ethiopian plateau and the Nile valley (P. schultzei, Th. mixtus, T. kraepelini, T. cf orientalis), while two are Sahelian species that span Africa from east to west (M. mauretanicus, T. processifer et ssp.).Two new synonyms are introduced. One new subspecies (T. processifier friedae) is described from the Ethiopian plateau. It is suggested that Tropodiaptomus orientalis (Brady, 1886), the type species of its genus, should not be considered a nomen dubium, but should be redescribed on its type female(s) and on topotypical males from Sri Lanka.