The evolution, correlation, and paleogeographic significance of the Permian ammonoid family Cyclolobidae

The Permian ammonoid family Cyclolobidae Zittel is essentially of Middle Permian age, and most species ranged over the paleotropical into temperate regions, and lived for no more than one to three stages. The time ranges of the three principal genera, Waagenoceras, Timorites and Cyclolobus overlap to some degree, so correlation must be based on species rather than genera. Cyclolobus evolved from Godthaabites , and both inhabited temperate paleolatitudes on the whole. Cyclolobus inhabited a small region, now dispersed around the rim of the Indian Ocean. The Waagenoceras - Timorites lineage, contemporaneous with the Godthaabites-Cyclolobus suite, inhabited paleotropical latitudes, and Timorites is found around the rim of the Pacific Ocean. Such genera, restricted in longitudinal as well as latitudinal distribution, are important in constructing pre-drift distribution of plates.
The Kalabarghian and Chhidruan faunas of the Salt Range are identical with the Capitan Stage ( sensu lato ) of Texas. Younger Permian rocks and faunas are subdivided into the Kathwai fauna, the Baisalian, Vedian, Ogbinan faunas, followed by the Makarewan Stage of New Zenland.     

Growth history of Lower Mississippian Waulsortian mounds: Distribution,stratal patterns,and geometries,New Mexico

Summary The factors controlling the localization and growth of Lower Mississippian Waulsortian mounds have been difficult to establish because of limited exposure of individual mounds and mound-bearing platforms in western Europe, where the Waulsortian facies have been studied most intensively. Mounds on the Lower Mississippian homoclinal ramp of the Lake Valley Formation in the Sacramento Mountains, however, are exposed exceptionally well at platform, outcrop, and mound scales in an area roughly 5 km by 20 km, and provide the opportunity to better understand these aspects of Waulsortian mounds. Mounds occur in the northern 2/3 of the essentially continuous 32 km dip transect of the ramp. Mounds grew in an outer ramp setting below wave base, predominantly in the deeper part of the photic zone. Mounds range from broad composites of laterally back-stepping subunits on the shallow part of the ramp to taller and more vertically stacked composite structures down-ramp. The composite nature of the mounds is documented by distinct stratal units that have characteristic facies and geometries common to mounds throughout the transect. As a result, mound growth and form can be described in terms of several primary controlling parameters—submarine topography, water circulation (upwelling of nutrients and oxygen rich waters; oxygen deficient bottom waters), light penetration and the distribution of phototrophic microorganisms, and fluctuations in accommodation. Episodic mound growth is documented by diastems bounding the stratal units within the mounds as well as by the long-established useage of Alamogordo, Nunn, and Tierra Blanca phases of mound growth, correlative with the contemporaneous level-bottom units. However, mound growth that has been correlated with the level-bottom Nunn Member in reality took place during the late stage of deposition of the Alamogordo Member, and nondeposition or erosion occurred on the mounds during deposition of the Nunn Member. Mounds in the shallower (northern) part of the ramp grew primarily on the margins of a broad, low, intra-ramp topographic high, which had been defined previously from facies and isopach trends in underlying strata. Both the margins and the irregular topography of the high are reflected in the distribution, growth geometries, and facies patterns of the mounds, and by the facies and thickness trends of the strata enclosing the mounds. The siting of individual mounds on the shallower part of the ramp was controlled by local topography on and along the margins of the intra-ramp high. Mound growth along the margin began at or just behind local highs, retrograded onto the intra-ramp high, and then prograded onto the basinward side of the initial mound. The lesser height and more pronounced backstepping of mounds on the shallower part of the ramp, in contrast to mounds that grew more vertically and with less back-stepping down ramp suggest that growth and overall morphology were also controlled by accommodation.     

Molecular systematics and patterns of morphological evolution in the Centropagidae (Copepoda: Calanoida) of Argentina

Recent studies have shown the value of complementing standard taxonomy with genetic analyses to reveal cryptic diversity and to aid in the understanding of patterns of evolution. We surveyed variation in the COI mitochondrial gene in members of the three genera of centropagid copepods from the inland waters in Argentina. In general, we found a close association between molecular and morphological systematics in this group. Similar to findings for marine calanoids, genetic distances within Boeckella species were modest (< 4%), while distances among morphospecies were much larger (> 11%). Parabroteas is currently monotypic, although we detected cryptic genetic diversity, with two lineages showing 5.5% divergence. In contrast, Karukinka was not a valid genus, apparently representing an interesting and atavistic offshoot of B. poppei , a result reinforcing the value of considering both morphological and molecular evidence. Moreover, we used combined genetic and morphological information, analysed with maximum likelihood methods, to evaluate the common assumption that evolution tends to proceed via the loss of structures in crustaceans. Although analysis of other taxa and character types is required to evaluate fully the reduction hypothesis, our results suggest that structures may be gained readily as well as lost.  © 2007 The Linnean Society of London, Biological Journal of the Linnean Society , 2007, 90 , 279–292.     

The evolution of spliceosomal introns: patterns, puzzles and progress

The origins and importance of spliceosomal introns comprise one of the longest-abiding mysteries of molecular evolution. Considerable debate remains over several aspects of the evolution of spliceosomal introns, including the timing of intron origin and proliferation, the mechanisms by which introns are lost and gained, and the forces that have shaped intron evolution. Recent important progress has been made in each of these areas. Patterns of intron-position correspondence between widely diverged eukaryotic species have provided insights into the origins of the vast differences in intron number between eukaryotic species, and studies of specific cases of intron loss and gain have led to progress in understanding the underlying molecular mechanisms and the forces that control intron evolution.     

The role of succession in the evolution of flammability

Fire-prone ecosystems contain plants that are both fire-adapted and flammable. It has been hypothesized that these plants were under selection to become more flammable, but it is unclear whether this could be adaptive for an individual plant. We propose arrested succession as a robust mechanism that supports the evolution of flammability in surface fire ecosystems without the need to invoke group selection or additional fitness benefits. We used the natural history of lodgepole pine (Pinus ponderosa) forests, longleaf pine (Pinus palustris) forests, and tall grass prairies to create a general mathematical model of surface fire ecosystems and solved for the evolutionarily stable strategy (ESS) level of flammability. In our model, fires always kill understory plants and only sometimes kill overstory plants. Thus, more flammable plants suffer increased mortality due to fires, but also more frequently arrest succession by clearing their understory of late successional competitors. Increased flammability was selected for when the probability of an overstory plant dying from an individual fire was below a maximum threshold and the rate of succession relative to fires was above a minimum threshold. Future studies can test our model predictions and help resolve whether or not plants have been selected to be more flammable.     

Directionality,convergence, and rate of change during early succession in the Inland Pampa,Argentina

Abstract. We tested the following hypotheses forthe first five years of a grassland succession: (a) community changes are mainly directional and related to time after disturbance ratherthanto environmental fluctuations; (b) rates of succession decrease over time, and (c) plant communities in different plots converge on a similar composition within five years of succession. We tested those hypotheses using a Principal Components Analysis applied to data from four successional plots established in successive y ears in a large cropland in the Inland Pampa, Argentina. Community changes were correlated to the age of the plots, and unrelated to rainfall variability, a major environmental variable in grasslands. Successional rates were constant over the five years, probably because of the continued dominance of different annuals; we conclude that successional rates depend on the life history of the dominant species rather than on any emergent community property. We found no evidence of convergence ordivergence; we concluded that the results of successional studies may depend on the temporal and spatial scale of observation.     

Environmental heterogeneity and habitat use of the red viscacha rat in drylands of west-central Argentina

Environmental heterogeneity shapes the traits of natural populations, including space use and burrowing behavior. We studied the red viscacha rat (Tympanoctomys barrerae), a semifossorial rodent with patchy distribution in drylands of west-central Argentina, to provide ecological data on habitat and burrow features of this specialist species. We collected data on 165 burrows and 55 individuals from 2017–2018 and observed correlations between different vegetation types, vegetation diversity, and physical attributes (e.g., soil hardness). A high number of individual red viscacha rats was negatively associated with herbs. The number of burrow entrances was positively associated with harder soils and negatively associated with vegetation cover. Our results suggest that the species' patchy distribution is strongly associated with environmental heterogeneity of these arid environments, and consequently provide an essential step towards conserving their populations across their geographic range.     

Morphological evolution: Estimation principles, patterns, and mechanisms

Directions, modes, specializations, and coordination systems of morphofunctional changes are discussed based on modern data. Phylogenetic heterochronies (pedomorphoses and outstripping), which provide the basis for parallel, mosaic, and saltation development and different rates of morphological evolution, are regarded as important events of morphological diversification. The analysis of specificity and relationships of structural levels of organization (including genetic and epigenetic) and the elaboration of evolutionary principles of their dynamic stability are thought to be the most promising fields of modern research.     

Early Jurassic shell beds from marginal marine environments in southern Mendoza, Argentina

External estuarine facies in Late Sinemurian beds from the base of the Puesto Araya Formation in the Atuel river region, Mendoza Province, Argentina, contain concentrations of a new species of Cardinioides (a shallow burrowing suspension-feeding Pachycardiidae bivalve) and a low diversity benthic fauna. These bivalves appear in tidal inlet facies of a wave-dominated estuary (environment similar to lagoon-barrier island systems), forming bioclastic lags at the channel bases. The taphonomic attributes (such as shell articulation, degree of fragmentation and abrasion, bioclast size, orientation) change from North to South, from monospecific concentrations of nearly complete large Cardinioides shells with low degree of fragmentation and abrasion, through beds with smaller Cardinioides shells associated with a few bivalves from marine environments, to only isolated fragmented specimens associated with a fully marine biota including not only other bivalves but also brachiopods and ammonoids. This, together with different palaeoecologic, sedimentologic and stratigraphic attributes at the studied localities are evidence of southwards changing environmental conditions from marginal marine (brackish) to fully marine on the eastern margin of the Neuquén basin at that time. From detailed analysis of taphonomic features, size distribution of shells, and the associated fauna at the different localities, the new species is regarded as a brackish water endemic, possibly a low salinity euryhaline species, which inhabited well oxygenated waters. Salinity, turbulence levels and food supply were the main limiting factors in the distribution of the species.     

First multi-proxy record of Jurassic wildfires from Gondwana: Evidence from the Middle Jurassic of the Neuquén Basin,Argentina

Wildfires play a crucial role in recent and ancient ecosystem modeling but their detailed history on the Earth is still not well recorded or understood. The co-occurrence of charcoal and pyrolytic polycyclic aromatic hydrocarbons (PAHs) is used for the recognition of wildfires in geological record that may have implications for the analysis of the terrestrial environment, ecosystems, climate and the level of atmospheric oxygen. Here we present the first multi-proxy evidence of wildfires on the Gondwana continent during the Jurassic, based on the occurrence of charcoal and pyrolytic PAHs in the Middle Jurassic of the Neuquén Basin, Argentina. This is the first evidence of wildfire in the Aalenian, the lowest stage of the Middle Jurassic, and one of the few records of wildfires in the Bathonian. Temperature interpretations, derived from charcoal reflectance data, show that charcoals formed in low temperature surface fires that only sporadically reached the higher temperatures, possibly related to crown fires. The occurrence of charcoals in the Middle Jurassic deposits confirms recent results that the atmospheric oxygen level reached at least 15% during the Middle Jurassic times.     

Ginkgoalean woods from the Jurassic of Argentina: Taxonomic considerations and palaeogeographical distribution

A specimen of Baieroxylon rocablanquense nov. sp. from the Roca Blanca Formation (Early Jurassic), and a specimen of Ginkgomyeloxylon tanzanii Giraud and Hankel from the La Matilde Formation (Middle Jurassic), both located in the Santa Cruz province, Argentina, are described in detail. Identification of the morphogenus Baieroxylon is based upon secondary xylem characteristics (cross-field tracheid pitting, cross-fields and ray characters), while identification of Ginkgomyeloxylon is based upon pith, primary xylem and secondary xylem features. A synthesis of Ginkgoalean woods is presented, which combines diagnostic anatomical evidence with data related to stratigraphic and paleogeographical distributions. Based on the results of this analysis, a key for genus-level identification is provided and a new genus, Ginkgopitys, is proposed. These results are used to elucidate global patterns of historical distribution over the course of geological time. In Gondwana, a great diversity of “mixed-type” woods was present during the Mesozoic, especially during the Late Triassic. In contrast, in Laurasia a lower diversity of the mixed-type is recorded for the Paleozoic and Mesozoic, with increases in “abietinoid-type” wood – similar to extant Ginkgo – taking place at the beginning of the Cretaceous. During the Jurassic and Early Cretaceous in both Laurasia and Gondwana, mixed-type and abietinoid-type woods co-existed, illustrating that important evolutionary changes in wood anatomy occurred during the Mesozoic (Jurassic-Cretaceous).     

Multifractal spatial patterns and diversity in an ecological succession

We analyzed the relationship between biodiversity and spatial biomass heterogeneity along an ecological succession developed in the laboratory. Periphyton (attached microalgae) biomass spatial patterns at several successional stages were obtained using digital image analysis and at the same time we estimated the species composition and abundance. We show that the spatial pattern was self-similar and as the community developed in an homogeneous environment the pattern is self-organized. To characterize it we estimated the multifractal spectrum of generalized dimensions D(q). Using D(q) we analyze the existence of cycles of heterogeneity during succession and the use of the information dimension D(1) as an index of successional stage. We did not find cycles but the values of D(1) showed an increasing trend as the succession developed and the biomass was higher. D(1) was also negatively correlated with Shannon's diversity. Several studies have found this relationship in different ecosystems but here we prove that the community self-organizes and generates its own spatial heterogeneity influencing diversity. If this is confirmed with more experimental and theoretical evidence D(1) could be used as an index, easily calculated from remote sensing data, to detect high or low diversity areas.     

Palynostratigraphy of Middle Cambrian to lowermost Ordovician stratal sequences in the High Zagros Mountains, southern Iran: Regional stratigraphic implications, and palaeobiogeographic significance

A palynological investigation of Cambro-Ordovician stratal sequences in the High Zagros Mountains of southern Iran permits the definition of a series of successive acritarch assemblage zones of chronostratigraphic significance, much improving the current knowledge of the Lower Palaeozoic stratigraphy of this important area for oil exploration. The five acritarch assemblage zones can be readily correlated with previously established palynostratigraphic schemes constrained by co-occurrence of independent age evidence, confirming the utility of organic-walled microfossils for the detailed biostratigraphic characterization of sedimentary units. The proposed biozonation will facilitate accurate dating of the southern Iranian Cambrian sequences during future drilling of deep test oil wells. Acritarch assemblage zone I (Middle Cambrian), occurs at the base of Member C of the Mila Formation; assemblages zone II (late Middle to earliest Late Cambrian) extends through the middle and upper part of the same lithostratigraphic unit; zone III (early Late Cambrian in age) characterizes the lower part of the Ilebeyk Formation; zone IV (middle Late Cambrian up to Cambrian/Ordovician transitional levels) occurs in the middle and upper part of the Ilebeyk Formation; finally, acritarch assemblage zone V ranges through the basal part of the Zardkuh Formation and proves an early Tremadocian age for the latter unit. The Mid-Late Cambrian acritarch associations show a marked Avalonian palaeobiogeographical affinity, also sharing a high proportion of taxa with typical Baltican and North Africa–Gondwanan assemblages; on the other hand, they are clearly different from known Laurentian (North America) fossil microphytoplankton suites. These results are in general agreement with current palaeogeographical models which place Avalonia, Baltica, and the North African part of Gondwana, all at relatively high southern palaeolatitudes, in contrast with the sub-equatorial position of Laurentia. However, the presence of many typical “Avalonian” taxa in the Iranian Mid-Late Cambrian assemblages would suggest a closer position of Iran to Avalonia than currently envisaged. The observed breakdown of acritarch biogeographic differentiation in earliest Ordovician times possibly represents a major disruption of oceanic current patterns and a lessened palaeolatitudinal thermal gradient.     

Metamorphosis in the Urodelan amphibians: patterns, regulation mechanisms, and evolution

Patterns of metamorphosis and mechanisms of its regulation in primitive and advanced salamanders are compared. It is found that urodelan evolution was characterised by the following trends: 1) increase in the number of metamorphosing systems; 2) increase in the amplitude of metamorphic transformations of each particular system due to the progressive divergence of the larval and the adult morphology; 3) synchronization of metamorphic transformations and their concentration within a relatively short period of ontogeny; 4) increase in the role of the thyroid hormones (TH) in the regulation of metamorphosis. Structures that are induced by factors other than TH and develop independently of TH in primitive Urodela species acquire TH-dependence in phyletically more advanced salamanders. For instance, morphogenetic induction as a mechanism of ontogeny regulation is substituted by endocrine induction with TH as the inducing factor. The switch from morphogenetic to endocrine induction stimulates the following events: 1) optimization of ontogeny; 2) reduction of the metamorphosis duration; 3) formation of the dissociability of larval and post-metamorphic stages of ontogeny, which, in its turn, is a precondition for the swith to necrobiotic metamorphosis and to the direct development.     

Patellogastropoda and Vetigastropoda (Mollusca,Gastropoda) from the marine Jurassic of Patagonia,Argentina

Gastropod faunas from the Early Jurassic (Late Pliensbachian–Early Toarcian) marine deposits of Chubut Province, Argentina, are described from Lomas Occidentales, Cerro La Trampa and Puesto Currumil localities, representing eight species, three of them new. These are Scurriopsis? sp., Chartronella gradata sp. nov., Calliotropis? sp., Pleurotomaria sp., Leptomaria sp., Hamusina? wahnishae sp. nov., Colpomphalus musacchioi sp. nov. and Jurassiphorus? cf. triadicus Haas. The gastropod assemblage reported here testifies paleobiogeographical connections with other coeval gastropod associations from the western Tethys. However, Chartronella, Hamusina and Jurassiphorus may represent survivors of Triassic associations, considering the ancient seaway from Peru as the most plausible hypothesis for biotic exchange of these faunas during the Late Triassic–Early Jurassic boundary. An abundant and diverse invertebrate fauna such as corals, echinoderms, cephalopods, brachiopods, bivalves and other gastropods found in association with the gastropods described here characterises a shallow marine environment for the gastropod-bearing rocks.http://www.zoobank.org/urn:lsid:zoobank.org:pub:7B8EAFC0-3AC0-4F91-97A5-22AAC6A19909     

The evolution of staminodes in angiosperms: patterns of stamen reduction, loss, and functional re-invention

Stamens that have lost their primary function of pollen production, or staminodes, occur uncommonly within angiosperms, but frequently fulfill important secondary floral functions. The phylogenetic distribution of staminodes suggests that they typically arise during evolutionary reduction of the androecium. Differences in the genetic control and patterns of stamen loss between actinomorphic and zygomorphic flowers shape staminode development. In clades with actinomorphic flowers, staminodes generally replace an entire stamen whorl and staminode loss seems irreversible. In contrast, in clades with zygomorphic flowers staminodes evolve from a subset of the stamens in a whorl and staminodes can reappear in a lineage after being lost (e.g., Cheloneae, Scrophulariaceae). If staminodes do not adopt new functions during androecium reduction they are lost quickly, so that nonfunctional staminodes appear only in recently derived taxa. Alternatively, when staminodes assume new floral roles, either directly or indirectly after a nonfunctional period, they can become integral floral components which perpetuate within clades (e.g., Orchidaceae). Indirect evolution of staminode function allows greater flexibility of function by allowing staminodes to take over roles not performed by stamens, such as involvement in mechanisms to prevent self-pollination and mechanisms of explosive pollination. Multifunctional staminodes characterize lineages with universal or widespread staminodes.     

The evolution of DNA sequences in Escherichia coli

It is proposed that certain families of transposable elements originally evolved in plasmids and functioned in forming replicon fusions to aid in the horizontal transmission of non-conjugational plasmids. This hypothesis is supported by the finding that the transposable elements Tn3 and gamma delta are found almost exclusively in plasmids, and also by the distribution of the unrelated insertion sequences IS4 and IS5 among a reference collection of 67 natural isolates of Escherichia coli. Each insertion sequence was found to be present in only about one-third of the strains. Among the ten strains found to contain both insertion sequences, the number of copies of the elements was negatively correlated. With respect to IS5, approximately half of the strains containing a chromosomal copy of the insertion element also contained copies within the plasmid complement of the strain.     

The mind of primitive anthropologists: hemoglobin and HLA, patterns of molecular evolution

Frank Livingstone played a central role in defining the population genetics of the sickle cell mutation at position 6 of the human beta globin gene, the most famous amino acid substitution in evolutionary biology. Its discovery occurred at a time when traditional, 19th-century principles of natural selection were being joined with the newly discovered mechanics of DNA structure and protein synthesis to produce Neo-Darwinian theory. When combined with the epidemiology of malaria in Africa, differential mortality for both homozygotes, and the resulting advantage of the heterozygote, sickle cell became the classic balanced polymorphism. Human HLA-A has 237 molecular alleles. The histocompatibility system has as its primary function the presentation of peptides to T-cell receptors and plays an essential role in the immune system. Nearly all of the alleles are codominant and fully functional. Despite almost 30 years of disease-association studies with HLA-A, no convincing evidence has been found for differential fertility or mortality at this locus. Yet the dogma in the histocompatibility field is that this extensive human polymorphism is maintained by "balancing selection." Explaining HLA-A polymorphism is what one might call the sickle-cell-effect. This one mutation, coming as it did at the historical convergence of Darwinian theory and modern genetics, and carrying with it the strong relationship between mutation, disease, and allele frequency, has conditioned our discussion of human genetic variation and population genetics. Has the strength of this early idea made evolutionary biologists uncritical of systems like HLA-A and retarded the search for new mechanisms of molecular evolution? Is it now time to move away from a focus on mutation and polymorphism in evolutionary genetics and toward a systems theory that would explain the origin and evolution of hemoglobin and HLA-A and the biochemical pathways that surround them?