Transposable elements and the penetrance of quantitative characters in Drosophila melanogaster

We wanted to determine whether there is a correlation between the quantitative character, the penetrance of the loss of humeral bristles in scute lines, and the distribution of transposable genetic elements in their genomes. We derived 18 isogenic lines with penetrance ranging between 2.8% and 92.0% from six mutant lines. The localization of the transposable elements (TEs) P, mdg1, Dm412, copia, gypsy and B104 was determined in all isogenic derivatives by in situ hybridization. The total number of the TE sites over all lines was 180. A comparison of the distribution of the TEs in the isogenic lines revealed the location of sites typical of lines with similar penetrance, no matter which parental line was involved. The results obtained suggest that such typical sites appear to tag the genome regions where the polygenes affecting the character in question are most likely to be found.     

Expression of the quantitative trait radius incompletus, temperature effects and localization of mobile genetic elements in Drosophila. II. Mobile genetic elements Dm-412

Two "selection" sub-populations (ris- and ris+), as well as two "temperature" ones (ric113 and ric149) were earlier developed from the control ric sub-population with interrupted vein of the fly wing. All five sub-populations were investigated for hybridization of MGE Dm-412 with drosophila polytene chromosomes in situ. The tree of similarity of MGE Dm-412 hybridization patterns was built by the methods of matrix clusterization. The sub-populations with the most resembling expressions of characters (ris- and ric113, ris+ and ric149) were found to be also most similar in patterns of MGE localization and their changes. Nonrandomness of these changes was shown, the similarity of patterns being demonstrated to be mainly the result of the changes. There is evidence that such effects cannot be accounted for by genetic drift and independent stochastic changes in MGE localization.     

The homeo box: facts and hypotheses

A review of the published data pertaining to studies of homeo box, a homologous DNA sequence found in genomes of various organisms. The following aspects of this important phenomenon are considered: expression of homeo box-containing genes, pattern of their organization, localization of corresponding proteins, possible function of proteins, evolution of homeo box.     

Mobile genetic elements and sexual reproduction

Transposable elements (TE) are prominent components of most eukaryotic genomes. In addition to their possible participation in the origin of sexual reproduction in eukaryotes, they may be also involved in its maintenance as important contributors to the deleterious mutation load. Comparative analyses of transposon content in the genomes of sexually reproducing and anciently asexual species may help to understand the contribution of different TE classes to the deleterious load. The apparent absence of deleterious retrotransposons from the genomes of ancient asexuals is in agreement with the hypothesis that they may play a special role in the maintenance of sexual reproduction and in early extinction for which most species are destined upon the abandonment of sex.     

Mobile elements in Drosophila natural populations in Azerbaijan

The distribution of four genome DNA fragments containing different mobile elements in chromosomes of Drosophila melanogaster individuals from Azerbaijan coast and mountain populations was studied. The average copy number of each element was shown to be approx. equal in both populations. Sites of preferential localization, where the elements were present in no less than in half of individuals could be revealed in each population for all the elements. A part of these sites coincided with regions of intercalary heterochromatin, the number of such coincidences being larger in mountain populations. The copy number of the mobile elements under study in X-chromosomes of individuals from natural populations as well as from laboratory strains was less than in autosomes. X-chromosomes of different individuals differed in mobile elements' localization more than autosomes. It was assumed that peculiarities of mobile elements' distribution in X-chromosome could reflect the effect of decondensed structure of chromatin in male X-chromosome on the transposition of mobile elements.     

Viral etiologies of AIDS: facts and hypotheses

All the epidemiological features suggest that the acquired immunodeficiency syndrome (AIDS) is caused by a single transmissible agent and surely a virus. First, cytomegalovirus, Epstein-Barr virus and hepatitis B virus have been proposed as possible etiological agents of AIDS. A direct link between ubiquitous viruses and the occurrence of the disease has been discarded. At present time, etiological researches provide evidence that retroviruses are the best candidates for the etiology of AIDS. These agents could be directly responsible of the profound suppression of the cell-mediated immunity observed in patients with AIDS. Two human retroviruses are now proposed: human T-cell leukemia virus (HTLV) or lymphadenopathy associated virus (LAV). Moreover simian AIDS (SAIDS) occurred spontaneously at several primate centers in USA; a retrovirus partially related to Mason Pfizer monkey virus appears to be the etiologic agent of SAIDS.     

Mobile genetic elements in plant sex evolution

The most significant theories of the appearance and maintenance of sex are presented. However, in the overwhelming majority of existing theories, the problem of sex, which is the central problem of evolutionary biology, is considered primarily through the prism of reproductive features of living organisms, whereas the issue of molecular driving forces of sexual reproduction is restricted to the possible role of mobile genetic elements (MGEs) in the appearance of sexual reproduction. The structural and functional significance of MGEs in the genomic organization of plants is illustrated. It is shown that MGEs could act as important molecular drivers of sex evolution in plants. The involvement of MGEs in the formation of sex chromosomes and possible participation in seeds-without-sex reproduction (apomixis) is discussed. Thus, the hypothesis on the active MGE participation in sex evolution is in good agreement with the modern views on pathways and directions of sex evolution in plants.     

Group I introns as mobile genetic elements: facts and mechanistic speculations--a review

Group I introns form a structural and functional group of introns with widespread but irregular distribution among very diverse organisms and genetic systems. Evidence is now accumulating that several group I introns are mobile genetic elements with properties similar to those originally described for the omega system of Saccharomyces cerevisiae: mobile group I introns encode sequence-specific double-strand (ds) endoDNases, which recognize and cleave intronless genes to insert a copy of the intron by a ds-break repair mechanism. This mechanism results in: the efficient propagation of group I introns into their cognate sites; their maintenance at the site against spontaneous loss; and, perhaps, their transposition to different sites. The spontaneous loss of group I introns occurs with low frequency by an RNA-mediated mechanism. This mechanism eliminates introns defective for mobility and/or for RNA splicing. Mechanisms of intron acquisition and intron loss must create an equilibrium, which explains the irregular distribution of group I introns in various genetic systems. Furthermore, the observed distribution also predicts that horizontal transfer of intron sequences must occur between unrelated species, using vectors yet to be discovered.     

Homeostatic non-shivering thermogenesis in humans facts and hypotheses

This review considers current research of different forms of non-shivering thermogenesis related to thermoregulatory and substrate homeostasis. The term “homeostatic non-shivering thermogenesis (HNST)” is proposed for explanation of facultative heat production stimulated by exposure to cold, food intake and accumulation of lactate during intensive muscle loading. Similarities and differences in physiological activity are displayed in three HNST types. Existence of a number of common points makes it possible to propose common physiological mechanisms of HNST realization. Among other candidates for HNST location, the brown adipose tissue (BAT) fits best as its function is specifi between thermogenic function in cold environment and diet-induced thermogenesis that makes it possible to link these two HNST types with BAT activity. Here we present the data indirectly confirming BAT functioning in processes of homeostatic normalization not related to cold acclimation or food intake. We also consider new data about BAT functional activity, its topographic body location, mechanisms of uncoupled respiration in different tissues in adult humans and about methods of BAT diagnostics which include the use of molecular markers. We list a number of facts confirming our suggestion about BAT activity being related to homeostatic normalization after physical loading. In conclusion, we propose an experimental research program for the testing of our hypothesis regarding BAT universal homeostatic function in humans.     

Aneuploidy in man (facts and hypotheses)

Mechanisms of the human aneuploidy formation are discussed proceeding from the review of the published data obtained by Soviet and foreign authors. It is supposed that hereditary determination of this process plays a main role as compared with new genomic mutations resulting from the induction by ecological factors. Microstructural rearrangements and nonhomologous recombination in nondisjunction of chromosomes during cell division are considered parallel with mosaicism as one of possible reasons of genetic predisposition.     

Mobile dispersed repeated DNA elements in the Drosophila genome

The molecular and cytogenetic organizations of 19 nonhomologous dispersed repeated sequence families were studied in 15 different laboratory strains of Drosophila melanogaster. Elements from each of the families appear to undergo transposition within the Drosophila genome, because there were striking differences in both the number and chromosomal locations of these elements between strains. A significant fraction (greater than 1%) of Drosophila DNA therefore has an unstable genomic organization. Each middle repetitive family exhibited similar variations in the chromosomal distribution of elements between the strains. Although the movements of these elements are not limited to a small number of genomic sites, there are chromosomal regions where elements from the different dispersed repeated DNA families appear to be clustered. The locations of such preferred integration sites are different in each of the D. melanogaster strains examined.     

Index selection for genetic improvement of quantitative characters

Summary This paper reviews the basic theory and summarizes various modifications of the selection index. The limitations of selection index are discussed in four parts: (1) changes of parameters due to selection. (2) sampling errors of parameter estimation. (3) evaluation of relative economic weights and (4) internal deterrents to index selection.