Crystal structures of three thiourea (tu) complexes of Pt(II): trans-[(tu)2Pt(NH3)2]Cl2, trans-[(tu)2Pt(CH3NH2)2]Cl2·3H2O and [Pt(tu)4]Cl2

The structures of three Pt(II) thiourea complexes, trans-[(tu)₂Pt(NH₃)₂]Cl₂ (1), trans-[(tu)₂Pt(CH₃NH₂)₂]Cl₂·3H₂O (2) and [Pt(tu)₄]Cl₂ (3), have been determined by X-ray diffraction and refined to R = 0.049 for 1026 reflections (1), R = 0.057 for 2547 reflections (2) and R = 0.046 for 2792 reflections (3). All the compounds crystallize in the space group P2₁/c and have cell dimensions: a = 5.437(1), b = 6.450(1), c = 17.980(3) Å, β = 96.05(2)°, Z = 2 (compound 1); a = 9.225(1), b = 15.404(2), c = 12.601(2) Å, β = 105.39(2)°, Z = 4 (compound 2); and a = 9.051(6), b = 10.203(6), c = 18.263(8) Å, β = 91.12(8)°, Z = 4 (compound 3). The unit cell of 1 and 3 contains only a single type of cation, while that of 2 is formed from two independent cations. In 1 and 2 the coordination spheres of the Pt atoms are rather similar, with angles close to 90° and coplanarity of the metal and respective donor atoms. Instead, in 3 the four sulfur atoms, which surround the Pt, display a slight distortion (0.06 Å from the mean plane) towards tetrahedral.     

Crystal structures of diketopiperazines containing α-aminoisobutyric acid: Cyclo(Aib-Aib) and cyclo(Aib-L-Ile)

The crystal and molecular structures of two α-aminoisobutyric acid (Aib)-containing diketopiperazines, cyclo(Aib-Aib) 1 and cyclo(Aib-L -Ile) 2 , are reported. Cyclo(Aib-Aib) crystallizes in the space group P1 with a = 5.649(3), b = 5.865(2), c = 8.363(1), α = 69.89(6), β = 113.04(8), γ = 116.0(3), and Z = 1, while 2 occurs in the space group P2₁2₁2₁ with a = 6.177(1), b = 10.791(1), c = 16.676(1), and Z = 4. The structures of 1 and 2 have been refined to final R factors of 0.085 and 0.086, respectively. In both structures the diketopiperazine ring shows small but significant deviation from planarity. A very flat chair conformation is adopted by 1, in which the C^α atoms are displaced by 0.07 Å on each side of the mean plane, passing through the other four atoms of the ring. Cyclo(Aib-Ile) favors a slight boat conformation, with Aib C^α and Ile C^α atoms displaced by 0.11 and 0.05 Å on the same side of the mean plane formed by the other ring atoms. Structural features in these two molecules are compared with other related diketopiperazines.     

Metal pseudohalide complexes. Part VIII. Preparation and structural determination of a polymeric 1:1 complex of copper(II) azide with 3-picoline,catena-di-μ-azido-[di-μ-azido-bis(3-picoline)dicopper(II)]

A 1:1 complex of copper(II) azide with 3-picoline has been synthesized and shown to be polymeric by X-ray crystallography. The compound crystallizes in space group C2/c, with a = 23.120(9), b = 13.751(4), c = 6.663(2) Å, β = 100.43(2)°, and Z = 8. The structure has been refined to R_F= 0.063 for 979 observed MoKα diffractometer data. Two azido ligands lying on a crystallographic diad bridge a pair of copper atoms to form a planar Cu₂N₂ ring. The rings are linked alternately by pairs of a third type of azido ligands which asymmetrically bridge copper atoms related by the c glide, giving rise to a composite column structure. The coordination geometry about the copper atom is distorted trigonal bipyramidal, with the 3-picoline ligand occupying one of the axial positions. Infrared and electronic spectral data are also presented and discussed.     

The preparation and crystal structure analysis of bis(L-Arginine)Cu(II)(acetate)2trihydrate

The crystal structure of bis(L-arginine)Cu(II)(acetate)₂trihydrate has been determined by X-ray analysis. The complex crystallizes in the monoclinic space group P2₁, with cell dimensions a = 15.948(2), b = 16.878(2), c = 10.378(2) Å, β = 108.47(1)°, Z = 4. There are two independent formula units in the asymmetric unit. The Cu atoms were located from a Patterson synthesis and the remaining atoms from difference Fourier syntheses. The structure was refined by least-squares to R = 0.079 and R = 0.11. Each copper atom has an essentially square planar coordination with the two arginine molecules chelated via the carboxy oxygens and the α-amino nitrogens, but with distorted six-fold coordinations completed by weak Cu…O (acetate) interactions. Electrostatic interactions between the acetates and the protonated ends of the amino acid residues link the two independent [Cu(L-arginine)₂(acetate)₂] units into dimers, which are then connected via hydrogen bonds, also involving the water molecules, into an infinite network.     

MonodentateN coordination of 1aza4oxo1,3butadienes [R1NC(R2)C(R3)O] to platinum(II). X-ray structure of trans-[PtCl2(PEt3){σ-N-(t-BuNCHC(Me)O)}]

Reaction of dimeric trans-[PtCl₂(PR₃)]₂ with 1-aza-4-oxo-1,3-butadienes [R¹NC(R²)C(R³)O, R³ = Me, Ph, OMe, NEt₂] in a 1:2 molar ratio results in almost quantitative formation of mononuclear complexes trans·[PtCl₂(PR₃){σ-N-(R¹NC(R²)C(R³)O)}]. The ligands are bonded in the monodentate σ-N bonding mode to the platinum(II) centre. This has been established by an X-ray structure determination of trans-[PtCl₂(PEt₃){σ-N-(t-BuNCHC(Me)O)}]. Crystals of the latter compound are orthorhombic with space group Pc2₁n; cell constants are a = 14.712(3), b = 15.053(2), c = 9.025(5) Å, Z= 4 and R_w = 0.056 for 3281 reflections. The 1aza4oxol,3butadiene (α-iminoketone for R³ is alkyl or aryl) has the E-configuration about the imine bond (CN 1.34(4) Å), with a C(5)C(6) distance of 1.44(5) Å and a NC(5)/ C(6)O torsion angle of 89(4)°. As a result of this ligand conformation, the acetyl hydrogen atoms are positioned (on average) into the neighbourhood of the Pt-atom above the Pt-coordination plane. Infrared and NMR (¹H, ¹³C, ³¹p) data show that these structural features are also predominant in solution.     

Polynuclear complexes of copper(II) with the tetra-aza ligand 3,6-bis(2′-pyridyl)pyridazine(L). Crystal structure of the bromine derivative [Cu2L(OH)Br3]n

The tetra-aza ligand 3,6-bis(2′-pyridyl)pyridazine (L), when reacting in appropriate conditions with Cu(II) halides, gives rise to polynuclear complexes of general formula [Cu₂L(OH)X₃]_n (X = Cl or Br). The bromine derivative has been studied by X-ray analysis. The crystals are twins by merohedry of class I, space group Pn (P2₁/n apparent space group), with the following cell constants: a = 13.691(5), b = 6.245(3), c = 10.298(4) Å, β = 103.92(5)°. The structure was refined by least-squares techniques to a final R factor of 0.066. The structure consists of binuclear units joined to each other through bridging bromine atoms to form a polymeric array. The two independent copper atoms of the dinuclear moiety are five-coordinated with a geometry which is intermediate between a square-pyramid and a trigonal-bipyramid.     

Metal complexes of polycyclic tertiary amines. Part VII. Preparation and crystal structure determination of polymeric hexamethylenetetramine—mercury(II) thiocyanate (12), (CH2)6N4·2Hg(SCN)2

A 1:2 complex of hexamethylenetetramine with mercury(II) thiocyanate, (CH₂)₆N₄·2Hg(SCN)₂, was prepared and shown by X-ray crystallography to be polymeric. The mixed-ligand complex crystallizes in the space group P2₁/m, with a = 6.059(2), b = 19.710(5), c = 7.895(2) Å, β = 105.63(2)°, and Z = 2. The structure was refined to R_F = 0.060 for 1634 observed MoKα diffractometer data. Mercury(II) atoms in a row are linked pairwise by two thiocyanato groups in an end-to-end bridging mode, to give an infinite chain running in the a direction. Two neighboring chains are further laterally connected, successively by bidentate organic ligands which lie on a crystallographic mirror plane. The coordination geometry about Hg(II) is distorted tetragonal pyramidal, the metal atom binding strongly to two S atoms and a tertiary amino N atom (apex), and weakly to two thiocyanato N atoms.     

Crystal structure of trisodium β-d-fructofuranose 1,6-diphosphate octahydrate

Trisodium β-d-fructose 1,6-diphosphate octahydrate crystallises in the monoclinic space group P2₁ with unit-cell dimensions a = 13.289(2), b = 11.643(3), c = 7.092(1) Å, and β = 102.32(2)°. The unit cell contains two symmetry-related molecules. The structure has been determined by direct methods, and refined to an R value of 0.035 and an R_w value of 0.049. The puckering of the furanose ring is C-3-exo, corresponding to an E₃ conformation slightly distorted towards ⁴T₃. The sodium atoms are hexaco-ordinated. The crystal packing involves alternating charged layers and a network of hydrogen bonds which links the molecules belonging to the same layer and to adjacent layers.     

Preparation,crystal and molecular structure of aquadichlorobis(ethylpyridine)-oxovanadium

The compound VOCl₂·2(3-Etpy)·H₂O (Etpy = ethylpyridine) was prepared by slow hydrolysis of the toluene suspension obtained from the reaction of VCl₄ with 3-ethylpyridine The crystal was found to be monoclinic C2/c, Z = 4, ϱ(calc.) = 1.426 × 10³ kg m⁻³, a = 13.281(5), b = 13.989(7), c = 9.277(8) Å, V = 1723(2) ų β = 90.53(5)°.Final full matrix least-square refinement with anisotropic thermal parameters for all non-hydrogen atoms gave R = 0.039, R_w = 0.042, R_g = 0.053. The vanadium atom is hexacoordinate with the pyridine ligands in mutually trans positions in the plane containing the Cl atoms. The O vanadyl atom is in an axial position trans to the coordinated H₂O molecule, and the OVO line is a binary axis for the molecule.     

The preparation and crystal structure analysis of a 2:1 complex between L-lysine and copper(II) chloride

The crystal structure of bis(L-lysine)Cu(II) chloride dihydrate has been determined by X-ray analysis. The complex crystallizes in the monoclinic space group P2₁, with cell dimensions a = 5.189(1), b = 16.988(3), c = 11.482(2) Å, β = 93.57(1)°. The position of the Cu atom was found from a Patterson synthesis, the remaining atoms were located with DIRDIF. The structure was refined by least-squares to R = 0.060 and R_w = 0.065 for 2637 observed reflections. The copper(II) atom has an essentially square planar coordination with the two lysine molecules chelated via the carboxy oxygen and the α-amino nitrogen. However the two chlorine atoms form weak interactions with the metal to complete a strongly tetragonally elongated six-fold coordination. The two aliphatic chains have rather different geometries and are extended in a zig-zag mode. Extensive hydrogen bonding links the complex and the water molecules together.     

Synthesis and structure of a novel molybdenum-iron-sulfur cluster with Mo2Fe2 core and all-disulfide chelate ligands, [Mo2Fe2(μ3-S)4(S2CNEt2)5] CH3CN

The cluster compound [Mo₂Fe₂(μ₃-S)₄- (S₂CNEt₂)₅]CH₃CN has been prepared from the reaction system containing (NH₄)₂MoS₄, FeCl₃, NaS₂CNEt₂, PhSH and NaOCH₃. The crystal and molecular structure have been determined by the low temperature X-ray diffraction technique. The compound crystallizes in space group P2₁/c of the monoclinic system with a = 19.397(7), b = 10.891(7), c = 24.302(8) Å, β = 108.95(2)° and Z = 4. With use of 2647 reflections (I)>2.5σ(I)) the structure was refined to R(R_w) = 0.045(0.036). The cluster Mo₂Fe₂S₄(S₂CNEt₂)₅ has a cubane-like skeleton [Mo₂Fe₂S₄]⁵⁺. Each metal atom is coordinated by three μ₃-S atoms and a disulfide chelate terminal ligand. The fifth S₂CNEt₂ group as a bridging ligand coordinates to two Mo atoms. In a molecule of the compound, the two Mo atoms are equivalent but the two Fe atoms are unequivalent.     

Crystal structure and absolute configuration of (+)546-[copy4Cl2]HDBT: An example of torsional isomerism

The crystal structure and absolute configuration of the (?)₅₈₉-dibenzoylmonohydrogentartrate salt of the cation [Co(pyridine)₄Cl₂]⁺ have been determined from a three-dimensional X-ray analysis. Single crystals were grown from dimethylsulfoxide: space group P2₁2₁2₁, Z = 4, and cell dimensions a = 21.463(4), b = 23.112(3), and c = 7.490(1) Å. Full-matrix least-squares refinement on F converged at R = 0.075, 196 variables and 2029 observations. The cation has pseudotetragonal coordinate geometry, with axial Cl and equatorial N atoms. The dihedral angles between the pyridine ligands and the equatorial plane are 47(1), 39(1), 50(1), and 45(1)° and torsional isomerism is responsible for the solid-state chiroptical properties of the cation. The preferential crystallization of the P atropisomer of the cation is attributed to a general electrostatic attraction between cation and anion.     

Mixed-bridged bimetallic d8 complexes. Crystal and molecular structure of (η3-C3H5)Pd(μ-pz)(μ-N3)Rh(CO)2, heterobinuclear complex with extended Rh⋯Rh interactions

The preparation and properties of binuclear complexes containing the pyrazolate and azide groups as bridging ligands are reported. Representative formulae are: M₂(μ-pz)(μ-N₃)(CO)₄, M₂(μ-pz)(μ-N₃)- (COD)₂ (M = Rh or Ir), (CO)₂Rh(μ-pz)(μ-N₃)ML₂ (M = Rh, L₂ = COD, M = Ir, L = CO) and (η³-C₃H₅)- Pd(μ-pz)(μ-N₃)Rh(CO)₂. The crystal and molecular structure of the latter complex has been determined by single-crystal X-ray methods. Crystals are monoclinic, space group C₂/c with cell constants a = 18.4750(10), b = 10.0351(3), c = 13.6399(6) Å, α = 90, β = 100.022(4), γ = 90°, and Z = 8. The final R and R_w values were 0.051 and 0.062 for 1417 observed reflexions. This binuclear compound packs in the crystal zig-zag chains of rhodium atoms, along the c axis, wtth intermolecular Rh···Rh contacts of 3.290(1) and 3.604(1) Å. The Rh···Rh···Rh angle is 163.16(4)°.     

An inspection into the class of bis(alkyne)-undecacarbonyl-quadro-tetraruthenium complexes. Crystal structure and dynamic behaviour of Ru4(CO)11 (μ4, η2-MeC2Ph)2

The reactions of the butterfly complex Ru₄(CO)₁₂(MeC₂Ph) with several alkynes give the quasiplanar derivatives Ru₄(CO)₁₁(MeC₂Ph)(Alkyne) in almost quantitative yields.The structure of Ru₄(CO)₁₁(MeC₂Ph)₂ has been determined by X-ray methods. Crystals are monoclinic, space group C2/c, with Z = 4 in a unit cell of dimensions a 22.383(16), b 9.048(8), c 18.268(12) Å, β = 127.25(4)°. The structure has been solved from diffractometer data by Patterson and Fourier methods and refined by full-matrix least-squares to R = 0.034 for 1420 observed reflections. The complex, having an imposed C₂ symmetry, presents a tetranuclear metal cluster in which the Ru atoms are in a tetrahedrally-distorted square arrangement. Ten carbonyls are terminal and one symmetrically bridges an edge of the cluster. Each of the two alkyne ligands is σ-bonded to two Ru atoms on the opposite vertices of the cluster and π-bonded to the other two. The organometallic cluster has a Ru₄C₄ core in which the metal and carbon atoms occupy the vertices of a triangulated dodecahedron.     

Studies on the metalamide bond. XIX. A comparison of molecular distortions in the crystal structures of [N,N′-bis(2′-pyridinecarboxamido)-1,2-benzene] nickel(II) with its 6′-methyl-substituted Analogue

[N,N′-Bis(pyridine-2′-carboxamide)-1,2-benzene]nickel(II) monohydrate, C₁₈H₁₄N₄O₃Ni, crystallizes in the monoclinic space group C2/c with a = 14.240(4), b = 20.071(3), c = 16.275(2) Å,β = 97.25(2)^o, Z = 12 and its crystal structure has been refined to R = 0.033 for 3597 diffractometer data. [N,N′-Bis(6′-methylpyridine-2′-carboxamide)-1,2- benzene]nickel(II) monohydrate, C₂₀H₁₈N₄O₃Ni, crystallizes in the orthorhombic space group Pbca with a = 10.14(2) b = 17.12(2), c= 21.11(5) Å, Z = 8 and its crystal structure has been refined to R = 0.088 for 1979 photographic data. In both structures the nickel atoms are four coordinate with the ligands acting as N₄ tetradentates. For the first mentioned complex the structure consists of two independent molecules one of which is constrained, by space group requirements, to have C₂ (2) symmetry. These two molecules are closely similar and both exhibit nearly planar molecular arrangements with a small tetrahedral twist of up to 4^o at the nickel atoms. In the second complex the methyl substitution at the 6′-pyridyl positions causes severe steric strain in the molecule which gives rise to a 14.9^o tetrahedral twist at the nickel atom and approximately 25% pyramidal distortion at both amide nitrogen atoms. The resulting methyl-methyl separation of 3.26(1) Å is considerably less than the sum of the van der Waals radii for two such groups. This close separation leads to carbon-acid character for the methyl group protons which are shown to exchange for deuterons in NMR studies. A full analysis of the out-of-plane distortions and torsion angles of the two structures and a comparison with the previously reported analogous copper structures are made.     

Characterization of a mononuclear copper carboxylate complex: Bis(acetylsalicylato)bis(pyridine)copper(II)

The preparation, spectral properties, and crystal structure of a mononuclear copper(II) complex of acetylsalicylate and pyridine are reported. The complex exists as bis(acetylsalicylato)bis(pyridine)copper(II) both in the solid state and in chloroform solution. The crystal is monoclinic, space group P2₁/n, with a = 17.823(5), b = 10.903(4), c = 6.598(2) Å, β = 95.74(2)°. The final refinement used 1472 observed reflections and gave an R of 0.046. The copper atom is surrounded by four atoms in a trans square planar arrangement with two short CuO distances of 1.949(3) Å and two CuN distances of 2.003(4) Å. Two longer CuO distances of 2.623(3) Å are made with the remaining oxygen atoms of the aspirin carboxylate groups.     

Crystal structure at 87 K of sodium α-l-guluronate dihydrate

X-Ray data collected at 87 K showed crystals of sodium α-l-guluronate dihydrate (C₆H₉O₇Na · 2 H₂O) to be orthorhombic, P2₁2₁2₁ with a = 7.591(2), b = 18.884(5), c = 6.842(2) Å, and Z = 4. The structure was solved by direct methods, and full-matrix least-squares refinement based on 1587 F_o yielded R = 0.043 and R_w = 0.033. The structure analysis indicates partial anomeric disorder with α:β ～90:10. The guluronate ring has the ¹C₄(l) conformation. Sodium binds two translation-equivalent guluronate units and one water molecule in a primary five-fold coordination. The complexing oxygen functions, which include all axial hydroxyl groups and one carboxylate oxygen atom in the guluronate ring, describe a distorted trigonal bipyramid. A prominent feature of the crystal structure is the stacks of sodium atoms and guluronate residues in alternating sequence along the c axis. The stacks are held together by an intricate system of hydrogen bonds involving all oxygen atoms in the structure. The water molecules play an important role in this system both as hydrogen donors and acceptors.     

Structural,infrared and Mössbauer studies of octahedral cis-dichlorobis(diketonate)tin(IV) complexes having anti-tumour activity

Two complexes, SnCl₂(bzac)₂ [Hbzac = benzoylacetone] and SnCl₂(bzbz)₂ [Hbzbz = dibenzoylmethane], have been prepared and characterised by analytical, infrared and Mössbauer studies. In addition, the X-ray crystal structure of SnCl₂(bzbz)₂ has been determined. The crystals are orthorhombic, space group Pbca with cell parameters a=18.767(9), b=17.611(8), c=16.563(8) Å. A total of 2116 reflections with I/σ(I)⩾3 gave R=3.0%. The tin is coordinated to two cis-chlorine and four oxygen atoms from the dibenzoylmethanato ligands in an approximately octahedral arrangement. The bond distances in the tin coordination sphere are SnCl 2.335(2) and 2.344(2) Å and SnO 2.062(4), 2.074(4), 2.063(4) and 2.063(4) Å and the ClSnCl angle is 95.1(1)°. The results of anti-tumour tests on these complexes are given and attempts are made to correlate the anti-tumour activity of SnCl₂(bzbz)₂ with its structure.     

Structural features of group V A xanthates. The crystal and molecular structures of tris(O-isopropylxanthatoarsenic(III), antimony(III) and -bismuth(II)

The crystal structures of the title compounds, M(S₂COⁱC₃H₇)₃, M = As(III), (1); Sb(III), (2); and Bi(III), (3) have been determined by three dimensional X-ray diffraction techniques and refined by a least square method. Crystals of (1) and (2) are isomorphous and both crystallize in the rhombohedral space group R$\text{3}$, with unit cell parameters for (1) a_hex = 11.559(2), c_hex = 28.131(3) Å and for (2) a_hex = 11.696(2) and c_hex = 28.135(2) Å, Z = 6. The central metal atom in both (1) and (2) is coordinated by three asymmetrically chelating xanthate ligands [AsS 2.305(2) and 2.978(2) Å and SbS 2.508(1) and 3.006(1) Å] which form a distorted octahedral environment consistent with the presence of a stereochemically active lone pair of electrons. Crystals of (3) are orthorhombic, space group Pnma, Z = 4 with dimensions a = 11.003(3), b = 20.833(4) and c = 9.428(2) Å. The environment of the bismuth atom in (3) is seven coordinate and is comprised of six sulphur atoms, derived from three asymmetrically coordinating xanthate ligands, and a bridging sulphur atom from a neighbouring molecule which results in the formation a polymeric array. For (1) final R and R_W 0.050 and 0.047 respectively for 936 reflections [I ? 3σ(I); (2) R 0.040, R_w 0.040 for 1455 reflections I ? 2σ(I)]; and (3) R 0.052, R_w 0.039 for 1796 reflections [I ? 2σ(I).     

Mixed acetatopercholate transition metal complexes of pyrazole substituted ammonia. Crystal structure of [(acetato)(aqua)(tris(3,5-dimethyl-1-pyrazolylmethyl)amine)cobalt(II)] perchlorate

Mononuclear mixed anion (acetatoperchlorate) transition metal compounds with the ligand tris(3,5-dimethyl-1-pyrazolylmethyl)amine (amtd), of general formula [M(H₂O(amtd)(OAc)](ClO₄), where M is Co (1) or Ni (2), and [M(H₂O(amtd)(OAc)](ClO₄), where M is Co (3) or Cu (4), are described. In all compounds amtd acts as a chelating tetradentate ligand. Compounds 1 and 2 are isomorphous with an octahedral coordination geometry. Compounds 3 and 4 are isomorphous with five-coordinated metal ions. The ligand amtd has been hydrolyzed partly in forming the compound [Cu(H₂O)(am2d)(dmpz)(OAc)](ClO₄) (5), where am2d is bis(3,5-dimethyl-1-pyrazolylmethyl)amine and dmpz is 3,5-dimethylpyrazole.The structure of 1 consists of a six-coordinate [Co(H₂O)(amtd)(OAc) cation and a perchlorate anion. Space group P2₁2₁2₁ (orthorhombic) with a = 7.985(2), b = 16.833(2), c = 19.839(3) Å, Z = 4. The structure was solved by heavy-atom methods and refined by least-squares methods to a residual R of 0.044 (R_w = 0.048) for 1272 reflections. The Co(II) ion is octahedrally surrounded by the three nitrogens of the pyrazole groups with distances of 2.120(10), 2.138(9) and 2.159(9) Å and the amine nitrogen on 2.239(8) Å. The acetate anion and the water molecule occupy the fifth and sixth coordination site, with cobalt to oxygen distances of 2.112(8) and 2.076(6) Å, respectively. The coordinated acetate anion is both intra- and inter-molecular hydrogen bonded to the hydrogen atoms of the coordinated water molecule, with 0 to 0 distances of 2.60(2) and 2.67(1) Å, thus forming infinite chains of cations.