An infrared study of various nitrated polysaccharides and their structural characterisation

Infrared absorption spectra for a number of polysaccharides and their nitrated derivatives have been obtained. The frequency range 730–960 cm^?1 is useful for identification of the polysaccharides, and the region 900–1350 cm^?1 is more suitable for distinguishing the nitrated materials. The strong intensity of the nitrate bands limits the interpretation of spectra below 960 cm^?1, but above this frequency the absorption bands of nitrated polysaccharides are generally sharper and more clearly defined than the corresponding bands of the parent polysaccharides. Data on the COC bridge, CC ring, CO, and COH frequencies and on the CH deformation and stretching frequencies have been obtained. The use of i.r. spectroscopy for the quantitative determination of nitrate groups in nitrated polysaccharides is discussed.     

Raman studies of conformational changes in model membrane systems

Laser Raman spectra of concentrated samples of phosphatidyl choline and phosphatidyl ethanolamine were taken at approximately 10° intervals over a temperature range of 90°–19°C. The spectral region from 30 to 3300 cm^?1 was investigated. Several new spectral features were discovered which are correlated to phospholipid liquid crystalline structure. It is shown that 1) frequency shifts occur in the $\text{PO}{}_2{}^{\mathrm{?}}$ symmetric stretch band which suggest a change in exposure of the PO₂ group to the solvent upon melting, 2) the frequency of the translational hydrocarbon mode around 150 cm^?1 appears to indicate the degree to which the hydrocarbon chain is extended, 3) the methyl and methylene stretch bands at 2890 and 2850 cm^?1 very clearly demonstrate hydrocarbon chain melting, and 4) the 720 cm^?1 band, previously assigned to the symmetric OPO diester stretch, appears to be due instead to the symmetric CN stretch of choline.     

Raman spectroscopic analysis of the sodium salt of kappa-carrageenan and related compounds in solution

Laser-Raman spectra of Na⁺ kappa-carrageenan, Na⁺ neocarrabiose 4-sulphate, and neocarrabiose in the region 700–1500 cm⁻¹ are reported for solutions in H₂O and D₂O. The C-1-H-1α vibration, coupled with COH related modes, is assigned to a band at 840 cm⁻¹, close to the maximum of the symmetrical COS stretching (∼850 cm⁻¹). The symmetrical SO stretch is proposed to occur near 1040 cm⁻¹ and is probably coupled with COH vibrations which give rise to strong bands in the region 1000–1100 cm⁻¹. The intense band in the region 730–740 cm⁻¹ is ascribed to a complex ring vibration.     

Variations in the chemical composition of Costaria costata during harvest

In this study, variations in the chemical composition of Costaria costata collected during 3 months of the harvest period were analyzed. Moisture (4.94–10.50 %), ash (29.25–38.19 %), protein (9.77–18.15 %), lipid (0.60–2.21 %), crude fiber (4.45–5.68 %), alginate (22.49–29.13 %), fucoxanthin (0.07–0.32 mg g^?1), polyphenol (1.579–4.796 mg g^?1) were analyzed from dried alga. Six mineral elements were analyzed and the most abundant were calcium (6.64–11.56 mg g^?1) and magnesium (7.02–7.92 mg g^?1). Analysis of fatty acid composition indicated that the polyunsaturated fatty acids palmitoleic acid and linoleic acid were abundant in May and June, whereas the saturated fatty acid palmitic acid was abundant in July. Amino acid composition was also analyzed and the most abundant amino acids were aspartic acid, glutamic acid, glycine, and alanine. The ratio of mannuronic acid to guluronic acid of alginate was 2.57, 2.17, and 1.66 in May, June, and July, respectively. The gel strength of alginate was 1,449.0, 1,935.0, and 980.5 g cm^?1 in May, June, and July, respectively. The results of this study indicate that C. costata is an excellent resource that provides extensively applications in the industrial areas of chemicals, food, cosmetics, and pharmacy.     

Raman intensities of carbon-carbon stretching modes in a model membrane

Laser-Raman spectra of L-α-dimyristoylphosphatidylcholine (DMPC) liposomes in the spectral range 1000–1200 cm^?1 were obtained as a function of temperature from ?80 to +50°C. The triplet found in this spectral region was resolved into Lorentzian components by means of an iterative computer program. The peak intensities, band widths, and band areas of the resolved 1062 cm^?1 and 1130 cm^?1 bands, assigned to CC stretching vibrations of trans segments, were evaluated as a function of temperature. While the peak intensities of the bands decrease substantially with temperature, the band widths show a considerable increase. The change in band areas is therefore smaller than the change in peak heights. Experiments with all trans carboxylic acids showed that in these compounds the area of the Raman bands at 1062 cm^?1 and 1130 cm^?1 is proportional to the number of trans bonds. The variation with temperature of the number of trans and gauche bonds in the studied phospholipid is reflected by the change of the area of the 1130 cm^?1 Raman band.     

Far-infrared spectra of polyalanines with alpha-helical and beta-form structures

Far-infrared spectra of poly-L -alanines having the α-helical conformation and the β-form structure were measured. The spectra of glycine–L -alanine copolymer, silk fibroin, and copoly-D ,L -alanines with different D :L compositions were also measured. In addition to the bands so far reported, four bands at 190, 107, 120, and 90 cm^?1were found for the α-helix conformation and the two bands at 442 and 247 cm^?1 were found for the β form. The 442 cm^?1 band consists of the parallel 432 cm^?1 and perpendicular 445 cm^?1 bands. The 247 cm^?1 band is well defined and has strong dichroism parallel to the direction of stretching. These two bands appear also for silk fibroin and glycine–L -alanine copolymer. All the far-infrared bands of copoly-D ,L -alanines can be interpreted as α-helix bands, the three peaks at 580, 478, and 420 cm^?1 being ascribed to the D -residue incorporated into the right-handed α-helix or to the L -residue in the left-handed α-helix.     

Raman spectroscopic study of mechanically deformed poly-L-alanine

Raman spectroscopy has been used in investigating the conformational transitions of poly-L -alanine (PLA) induced by mechanical deformation. We see evidence of the alpha-helical, antiparallel beta-sheet, and a disordered conformation in PLA. The disordered conformation has not been discussed in previous infrared and X-ray diffraction investigations and may have local order similar to the left-handed 3₁ poly glycine helix. The amide III mode in the Raman spectrum of PLA is more sensitive than the amide I and II modes to changes in secondary structure of the polypeptide chain. Several lines below 1200 cm^?1 are conformationally sensitive and may generally be useful in the analysis of Raman spectra of proteins. A line at 909 cm^?1 decreases in intensity after deformation of PLA. In general only weak scattering is observed around 900 cm^?1 in the Raman spectra of antiparallel beta-sheet polypeptides. The Raman spectra of the amide N–H deuterated PLA and poly-L -leucine (PLL) in the alpha-helical conformation and poly-L -valine (PLV) in the beta-sheet conformation are presented. Splitting is observed in the amide III mode of PLV and the components of this mode are assigned. The Raman spectrum of an alpha-helical random copolymer of L -leucine and L -glutamic acid is shown to be consistent with the spectra of other alphahelical polypeptides.     

Uptake of Amino Acids by Barley Leaf Slices: Kinetics, Specificity, and Energetics

Uptake of ¹⁴C-labelled _L-lysine. _L-arginine, _L-glutamic acid, _L-aspartic acid, and glycine was studied in 0.75 mm wide barley (Hordeum vulgare L. cv. Lise) leaf slices. After an initial period (10 min) of rapid accumulation amino acid uptake proceeded at a steady, lower rate for several hours. Uptake was stimulated by 10^?4M Ca^?2+ ions. Uptake was strongly _pH dependent with the following optima: aspartic acid _pH 3.5. glutamic acid _pH 4.1. glycine _pH 5.8, lysine _pH 6–7, and arginine _pH 5–8 (a broad plateau). The optimal temperature was about 30°C. and the temperature coefficient in the range 0–20gGC was 2.3–2.5. Concentration-dependence data gave uptake isotherms which appeared to be multiphasic for all the amino acids used. The amino acids inhibited each other in a competitive fashion, indicating that they were all transported by a single carrier system. Uptake of lysinc was strongly inhibited by 10^?4M 2.4-dinitrophenol. Lysine uptake was not stimulated by light under aerobic conditions. However, it was much reduced in the dark under anaerobic conditions. This reduction was almost compensated for by light. The light-stimulation of uptake under anaerobic conditions was abolished by 10^?5M 3-(3,4-dichlorophenyl) 1.1-dimethylurea.     

Direct discrimination of different plant populations and study on temperature effects by Fourier transform infrared spectroscopy

Fourier transform infrared spectroscopy was used to characterise highland and lowland populations of Polygonum minus Huds. grown in different controlled environments. A thermal perturbation technique of two-dimensional correlation infrared spectroscopy (2D-IR) correlation spectra was applied to establish differences between the populations. The absorption peaks at 3,480 cm^?1 (hydroxyl group), 2,927 cm^?1 (methyl group), 1,623 cm^?1 (carbonyl group), and 1,068 cm^?1 (C–O group) were particularly powerful in separating the populations. These peaks, which indicate the presence of carbohydrate, terpenes, amide and flavonoids were more intense for the highland populations than lowland populations, and increased in environments with a higher temperature. Wavenumbers (1,634, 669 cm^?1) and (1,634, 1,555 cm^?1) in the 2D-IR correlation spectra provided fingerprint signals to differentiate plants grown at different temperatures. This study demonstrates that IR fingerprinting, which combines mid-IR spectra and 2D-IR correlation spectra, can directly discriminate different populations of P. minus and the effects of temperature.     

Laser-Raman study of valinomycin-doped and omega-CD3-labeled phosphatidylcholine liposomes

The relative intensities of the CH stretching vibrations are used to study the interaction of lecithin liposomes with valinomycin, a mobile carrier for alkali ions. In the case of dipalmitoyl lecithin liposomes, the lipid phase transition is not significantly affected by valinomycin. However, in dimyristoylphosphatidylcholine liposomes, the phase transition is broadened by the addition of 1 mol% valinomycin even at low K⁺ concentrations. This indicates that the carrier interacts with the hydrophobic core of the bilayer. In addition, these experiments showed that the lipid phase transitions which are reflected by the methylene groups and the terminal methyl groups are nearly equivalent. Therefore a reevaluation of the assignment of the CH stretching bands seemed necessary. Our Raman spectroscopic investigation of ω-deuterated dipalmitoyl lecithin liposomes improves the assignment of CH stretch vibrations to methylene and methyl groups. The deuteration displaces the methyl group vibrations to the 2050–2250 cm^?1 region and produces gross intensity changes of the bands at 2883 and 2936 cm^?1. These changes lead to the conclusion that both bands arise from vibrations which can be attributed simultaneously to the methylene and methyl groups of the fatty acid chains. The displacement of the CH₃ group vibrations from their original positions enhances the intensity ratios (per centimeter), $\text{2883}\text{2847}$ and $\text{2936}\text{2847}$, for the CH₂- groups which are used to monitor the lipid phase transition, and implies that the contributions of the CH₃ groups to the phase transition curves are unimportant. Our finding that the -CD₃ groups reflect no phase transition supports this statement.     

Estimation of poly A secondary structure from Raman scattering in acid aqueous solution.

In the frequency region 600–1600 cm^?1 the Raman spectra of acidic aqueous solutions of poly (rA) consist of several well-resolved lines. Four of these lines at 725, 1303, 1336 and 1508 cm^?1 demonstrate the Raman hypochromic effect of poly (rA) at pH-values of 5.73 and 5.35 as a function of the temperature.The results suggest that Raman intensity measurements are sensitive to order-disorder transitions of aqueous polynucleotides.     

Infrared-spectral characteristics of some acetylated,anomeric glycosides

Barker and co-workers had described the C-1-H deformation bands in the ranges 844 ±8 cm^?1 and 891 ±7 cm^?1 as characteristic bands for the α and β anomers, respectively, of hexo- and pento-pyranoses and -pyranosides, and their derivatives. Later, Audichya and co-workers reported the presence of the 844 ±8-cm^?1 band for both anomers of some aryl d-glucoside derivatives, making the applicability of the earlier findings doubtful. Examination by us of the i.r. spectra of some aryl glycoside derivatives suggested that the origin of the band at 844 ±8 cm^?1 for the β anomers of the p-substituted-aryl glycoside derivatives studied by Audichya et al. could be a CH, out-of-plane deformation-mode of the substituted aromatic ring. Also, their further claim of a characteristic band in the region 961-957 cm^?1 for α anomers is shown to be of little diagnostic value. The relative intensities of bands in the COC stretching region, 1100-1000 cm^?1, and a band near 300 cm^?1 in the COC deformation region, found only for the β anomers, are shown to be helpful in differentiating the anomers of some peracetylated alkyl and aryl glycosides.     

Infrared absorption and raman scattering of sulfate groups of heparin and related glycosaminoglycans in aqueous solution

The i.r. spectra for aqueous solutions of sulfated glycosaminoglycans and model compounds in the transmittance “window” region of the solvent (1400-950 cm^?1) are dominated by the strong and complex absorption centered at ～1230 cm^?1 and associated with the antisymmetric stretching vibrations of the SO groups. Primary and secondary O-sulfate groups absorb at somewhat higher frequencies (1260-1200 cm^?1) than N-sulfates (～1185 cm^?1). Each sulfate band lends itself to quantitative applications, especially within a given class of sulfated polysaccharide. Laser-Raman spectra of heparin and model compounds have been obtained in aqueous solution and in the solid state. The most-prominent Raman peak (at ～1060 cm^?1) is attributable to the symmetrical vibration of the SO groups, with N-sulfates emitting at somewhat lower frequencies (～1040 cm^?1) than O-sulfates. The Raman pattern in the 950-800 cm^?1 region (currently used in the i.r. for distinguishing between types of sulfate groups) also involves vibrations that are not localized only in the COS bonds.     

MACROALGAL RESPONSES TO NITROGEN SOURCE AND AVAILABILITY: AMINO ACID METABOLIC PROFILING AS A BIOINDICATOR USING GRACILARIA EDULIS (RHODOPHYTA)1

The use of macroalgae as biological indicators of dissolved nutrient source and availability in the water column was investigated. Total tissue nitrogen (N) content, pigments, and amino acids of the red alga Gracilaria edulis (Gmelin) Silva were compared to N source and availability in laboratory and field incubations to identify responses that would serve as bioindicators of N. Field-collected algae were preincubated (6–8 wk) in low-nutrient seawater to deplete their luxury reserves ofN. Incubations were then conducted for periods of 3 d in laboratory aquaria (N-spiked seawater) and in the field using macroalgal incubation chambers. After incubation in different N sources (NH₄⁺, NO₃^?, and urea) in laboratory aquaria, photosynthetic pigments (phycoerythrin and chlorophyll a) and total tissue N increased, in response to increasing [NH₄⁺] but not to [NO₃^?] or [urea]. Incubation in two ranges of [NH₄⁺], one from 0 to 80 μM and the other from 0 to 800 μM, in laboratory aquaria increased the total amino acid pool. Citrulline concentrations were the most responsive to [NH₄⁺] (r²= 0. 84). NH₄⁺ source treatments produced increases in citrulline, phenylalanine, serine, and free NH₄⁺ and decreases in alanine; NO₃^? treatments produced increases in glutamic acid, citrulline, and alanine; and urea treatments produced increases in free NH₄⁺ and decreases in phenylalanine and serine. The observed variations in amino acid content facilitated the development of an index for each N source based on relative concentrations of various amino acids (i. e. metabolic profiling). Gracilaria edulis was incubated along a field N gradient in the Brisbane River (three sites) and Moreton Bay (four sites), Queensland, Australia. Both phycoerythrin and tissue N appeared to respond equally to NH₄⁺ and NO₃^? availability in the field. N source indices, based on amino acid concentration, were effective predictors of both [NH₄⁺] and [NO₃^?] over a wide range of concentrations along the field gradient. Macroalgal physiological responses, particularly amino acid content, to changes in source and availability of N appear to be useful as sensitive bioindicators of N.     

Resonance Raman on the purple intermediates of the flavoenzyme D-amino acid oxidase

Resonance Raman (RR) spectra excited at 632.8 nm within a charge transfer absorption band were obtained for a catalytic intermediate, the purple complex of D-amino acid oxidase with D-proline or D-alanine as a substrate. The resonance enhanced Raman lines around 1605 and 1360 cm^?1 in either of the complexes were suggested to be derived from vibrational modes of reduced flavin molecule. Since the highest energy band at 1692 cm^?1 in the RR spectrum with D-alanine was shifted to 1675 cm^?1 upon [¹⁵N] substitution of alanine and ammonium, this Raman line in the spectrum with D-alanine or the line at 1658 cm^?1 with D-proline is assigned to the CN stretching mode of an imino acid corresponding to each amino acid. These results confirm the concept that the purple intermediate of D-amino acid oxidase consists of reduced flavin and an imino acid.     

Osmolarity-sensitive release of free amino acids from cultured kidney cells (MDCK)

Summary The amino acid pool of MDCK cells was essentially constituted by alanine, glycine, glutamic acid, serine, taurine, lysine, -alanine and glutamine. Upon reductions in osmolarity, free amino acids were rapidly mobilized. In 50% hyposmotic solutions, the intracellular content of free amino acids decreased from 69 to 25mm. Glutamic acid, taurine and -alanine were the most sensitive to hyposmolarity, followed by glycine, alanine and serine, whereas isoleucine, phenylalanine and valine were only weakly reactive. The properties of this osmolarity-sensitive release of amino acids were examined using³H-taurine. Decreasing osmolarity to 85, 75 or 50% increased taurine efflux from 0.6% per min to 1.6, 3.5 and 5.06 per min, respectively. The time course of³H-taurine release closely follows that of the regulatory volume decrease in MDCK cells. Taurine release was unaffected by removal of Na⁺, Cl^– or Ca²⁺, or by treating cells with colchicine or cytochalasin. It was temperature dependent and decreased at low pH. Taurine release was unaffected by bumetanide (an inhibitor of the Na⁺/K⁺/2Cl^– carrier); it was inhibited 16 and 67 by TEA and quinidine (inhibitors of K⁺ conductances), unaffected by gadolinium or diphenylamine-2-carboxylate (inhibitors of Cl^– channels) and inhibited 50% by DIDS. The inhibitory effects of DIDS and quinidine were additive. Quinidine but not DIDS inhibited taurine uptake by MDCK cells.     

Sodium-dependent amino acid transport in preimplantation mouse embryos. III. Na+-k+-atpase-linked mechanism in blastocysts.

Mouse blastocysts collapse in cytochalasin B (CB), reexpand (accumulate fluid) in control medium, but cannot reexpand in ouabain, an inhibitor of Na⁺K⁺-ATPases. These ATPases, then, seem to be necessary for fluid accumulation in blastocysts. Since intact blastocysts are relatively insensitive to ouabain, CB seems to make it possible for ouabain to reach the Na⁺K⁺-ATPases localized on the blastocoelic surface. CB-Collapsed blastocysts were found to transport alanine and lysine at the same rate as intact blastocysts, indicating that, in 1 hr, amino acids are transported into the cells of the intact blastocyst, and not into the fluid-filled blastocoel. Transport rates in CB-collapsed blastocysts do not exceed those in intact blastocysts, suggesting that hypothetical amino acid carriers are located only on the external blastocyst surface. Most important, ouabain strongly inhibits sodium-dependent alanine transport in CB-collapsed blastocysts, but not in intact blastocysts, providing strong evidence that Na⁺K⁺-ATPases, localized on the blastocoelic surface, are necessary for this transport. Ouabain does not inhibit sodium-independent lysine transport in CB-collapsed blastocysts. Thus, the dependency of both sodium-dependent amino acid transport and fluid accumulation upon Na⁺K⁺-ATPases, and the separate localization of amino acid carriers and these ATPases, provides functional evidence for an epithelial tissue type of mechanism for sodium-dependent amino acid transport in mouse blastocysts.     

Far-Infrared Study of the Vibrational Modes of 5′-GMP Gels and Crystals of Na+ and K+

Abstract

Five Far-Infrared (50–600 cm^?1) spectra are presented: the sodium and potassium salts of 5′ Guanosine Monophosphate (GMP), each salt in both the gel and crystal conformations, and poly(rG). Measurements were performed at a sample temperature of 10 Kunder vacuum with a liquid He-cooled bolometer. The spectra were fit with Lorentzians and assignments are suggested. There are noteworthy differences in oscillator strengths and frequencies of the bands between all spectra. We report the tentative observation of a 100 cm^?1 mode which is in the neighborhood of a mode observed by Raman spectroscopy in solution (1) and dried gels (2).     

Resonance raman spectroscopy of iron (3)--ovotransferrin and iron (3)--human serum transferrin

We report the resonance Raman spectra in the frequency range 300–1800 cm^?1 of Fe (III)-ovotransferrin and Fe (III)-human serum transferrin in aqueous solution at about 10^?4M protein concentration. This is the first observation of resonance Raman scattering ascribable to amino acid ligand vibrational modes of a nonheme iron protein. The resonance Raman spectra of the transferrins are similar except that the resonance band near 1270 cm^?1 is shifted to a higher frequency for Fe(III)-human serum transferrin than that for Fe(III)-ovotransferrin. The resonance Raman bands observed near 1170, 1270, 1500 and 1600 cm^?1 may reflect resonance enhancement of p-hydroxy-phenyl frequencies of tyrosine residues and/or imidazolium frequencies of histidine residues.     

13C-NMR study of CO2-fixation during the heterotrophic growth in Chlorobium thiosulfatophilum

The functioning of the biosynthetic pathways of the amino acids alanine, glycine, aspartic acid, glutamic acid and tyrosine, and of nucleosides in the photosynthetic bacterium Chlorobium thiosulfatophilum during heterotrophic growth on ¹³CO₂ and unlabelled acetate was investigated using ¹³C-NMR as the method for determination of the labelling patterns of the separated substances. On the basis of the analysis of the multiplet structure of the spectra of the tightly-coupled systems, the conclusion was drawn that the Calvin cycle does not function in the experimental conditions used. The labelling pattern of the glutamic acid indicated that about 30% of the amino acid molecules were synthesized through the reactions of the reductive carboxylic acid cycle, the remaining 70% being derived from oxaloacetate and exogenous acetate through the reactions of the Krebs cycle. Labelling patterns of the nucleosides were in agreement with their known biosynthetic pathways.