Isolation and Structure of a Novel C20 Gibberellin in Bamboo Shoots

A new gibberellin C₂₀H₂₆O₆, tentatively named “bamboo gibberellin”, was isolated from water extract of bamboo shoots (Phyllostachys edulis) through successive purification procedures: countercurrent distribution, charcoal column chromatography, and silicic acid adsorption and partition chromatography. Its structure was established as lβ-methyl-4aα-fromyl-7α-hydroxy-8-methylenegibbane-lα,10β-dicarboxylic acid (VI) from analysis on infrared, NMR and mass spectra of its methyl ester.     

Comparative analysis of oxygen transfer rate distribution in stirred bioreactor for simulated and real fermentation broths

Study of the distribution of the oxygen mass transfer coefficient, k _l a, for a stirred bioreactor and simulated (pseudoplastic solutions of carboxymethylcellulose sodium salt) bacterial (P. shermanii), yeast (S. cerevisiae), and fungal (P. chrysogenum free mycelia) broths indicated significant variation of transfer rate with bioreactor height. The magnitude of the influence of the considered factors differed from one region to another. As a consequence of cell adsorption to bubble surface, the results indicated the impossibility of achieving a uniform oxygen transfer rate throughout the whole bulk of the microbial broth, even when respecting the conditions for uniform mixing. Owing to the different affinity of biomass for bubble surface, the positive influence of power input on k _l a is more important for fungal broths, while increasing aeration is favorable only for simulated, bacterial and yeast broths. The influence of the considered factors on k _l a were included in mathematical correlations established based on experimental data. For all considered positions, the proposed equations for real broths have the general expression k_l a = aC_X^b ( \fracP_a V )^g v_S^d , k_{\rm l} a = \alpha C_{\rm X}^{\beta } \left( {{\frac{{P_{\rm a} }}{V}}} \right)^{\gamma } v_{\rm S}^{\delta } , exhibiting good agreement with experimental results (with maximum deviations of ±10.7% for simulated broths, ±8.4% for P. shermanii, ±9.3% for S. cerevisiae, and ±6.6% for P. chrysogenum).     

Characterizing the fluid dynamics of the inverted frustoconical shaking bioreactor

The authors conducted a three‐dimensional computational fluid dynamics (CFD) simulation to calculate the flow field in the inverted frustoconical shaking bioreactor with 5 L working volume (IFSB‐5L). The CFD models were established for the IFSB‐5L at different operating conditions (different shaking speeds and filling volumes) and validated by comparison of the liquid height distribution in the agitated IFSB‐5L. The “out of phase” operating conditions were characterized by analyzing the flow field in the IFSB‐5L at different filling volumes and shaking speeds. The values of volumetric power consumption (P/V_L) and volumetric mass transfer coefficient (k_La) were determined from simulated and experimental results, respectively. Finally, the operating condition effect on P/V_L and k_La was investigated. © 2018 American Institute of Chemical Engineers Biotechnol. Prog., 34:478–485, 2018     

1H nuclear magnetic resonance studies of histidine-containing di- and tripeptides. Estimation of the effects of charged groups on the pKa value of the imidazole ring.

The nmr titration curves of chemical shifts versus pH were observed for the protons of various histidine-containing di- and tripeptides. With these results, the macroscopic pK_a values and the chemical shifts intrinsic to each ionic species were determined by a computer curve-fitting based on a simple acid dissociation sequence. The pK_a value of the imidazole ring in N-acetyl-L -histidine methylamide was assumed to represent the intrinsic (or unperturbed) pK_a of the imidazole rings of histidine having peptide linkages at both the CO and NH sides. The pK_a values of the imidazole rings observed for most di- and tripeptides were reasonably reproduced by simple calculations using the intrinsic value and the perturbations due to the CO₂^? and NH₃⁺ groups located at various positions. Some other factors affecting the pK_a value of the imidazole ring are also discussed.     

Ionic strength effect on adsorption of cellobiohydrolases I and II on microcrystalline cellulose

Cellobiohydrolase I (CBH I) has a higher adsorption affinity (K _ad) and tightness (–H _a) for Avicel than cellobiohydrolase II (CBH II). The adsorption processes of CBH I and II were exothermic, and the degree of exothermy were larger with the increasing ionic strength. Entropy change of CBH I was larger than CBH II with increasing ionic strength. CBH I was more effective than CBH II for binding at a given ionic strength.     

Oxygen mass-transfer performance of low viscosity gas-liquid-solid system in a split-cylinder airlift bioreactor

The O₂ mass-transfer coefficient, k _L a, decreased by 20% when the viscosity of a simulated broth increased from 1.38 × 10^–3 to 3.43 × 10^–3 Pa s in a split-cylinder airlift bioreactor with a broth volume of 41 l. When the paper pulp concentration was below 10 g l^–1, k _L a hardly changed. While at 30 g l^–1, k _L a decreased by 56%. C₂O₄ ^2– and Na⁺ were found to have some effect on the k _L a value.     

Selection caused by self-fertilization

The generally held view that increased self-fertilization should be advantageous in the absence of counteracting selective forces reducing viability or fertility is reexamined. It is pointed out that the models on which this view is based all imply a gain in male (pollen) fertility with increased selfing. Hence, the postulated advantage may equally well be due to increased fertility, a fact which reopens the discussion on the selective significance of differential selfing. A new model for differential self-fertilization is presented which avoids built-in fertility selection by explicitly considering pollen available for self- and for cross-pollination. Plant types are distinguished with respect to their amounts r_i of pollen available for self-pollination, and these types are assumed to be identical with respect to their pollen and ovule fertilities. Moreover, the efficiency of cross-pollination is allowed to depend, for example, on population density, thus giving rise to a parameter b called “crossing potential”, while the efficiency of self-pollination is described by a parameter a called “selfing potential”. These parameters may be conceived of as ecological parameters. Increasing r_i produces a simultaneous increase in each of the four measures of self-fertilization (introduced in Part I of the present series) irrespective of the values of the ecological parameters. It is then shown that increased selfing can be both advantageous and disadvantageous in terms of fitness, dependig on the ecological parameters as well as on the mode of self-fertilization (i.e. where selfing occurs before or after outcrossing). The main result is, roughly, that for both selfing modes high crossing and low selfing potential favour increased cross-fertilization, while the reverse favours increased self-fertilization. However, the regions for a and b in which this holds true differ substantially for the two selfing modes. In the complements of these regions strange conditions for the evolution of increased selfing or outcrossing, respectively, exist. The significance of these results for explaining experimental observations is discussed.     

Use of glucose oxidase system in measuring aeration capacity of fermentors. Comparison of the dynamic and steady-state methods of kla measurement

A steady-state method for k_la determination has been presented using the Michaelis–Menten two-substrate kinetic equation for oxidation of glucose in the presence of the enzymes glucose oxidase and excess catalase. The conditions have been specified where spontaneous hydrolysis of lactone is sufficiently rapid, thus eliminating inhibitory action of lactone on the oxidation. In glucose oxidase-free batches, the k_la values were determined using various modification of the dynamic method. The dynamic methods in which gas interchange was effected without interrupting aeration and agitation of the batch yielded erroneously lower k_la values as compared to the results of steady-state methods if the measured k_la value was higher than 0.03 s^?1. The values yielded by the dynamic method in which the gas interchange was effected at the same time with turning on aeration and agitation of the batch agreed with values resulting from the steady-state method provided that the measured k_la values were lower than 0.08^?1 and the simultaneous interfacial transport of nitrogen and oxygen had been taken into account in the evaluation. At k_la values higher than 0.08 ^?1, this modification of the dynamic method also yielded lower k_la values as compared with the outcome of the steady-state method. The experiments performed do not, however, allow one to decide unambiguously on the whether these lower k_la values are due to failure of the adopted model to describe adequately the dynamic behavior of the system or whether they are true values differing from those yielded by the steady-state method on account of different physical properties of compared batches.     

Application of Polyelectrolyte Theory to the Study of the B-Z Transition in DNA (1)

Abstract

We have used the polyelectrolyte theory to study the ionic strength dependence of the B-Z equilibrium in DNA. A DNA molecule is molded as an infinitely long continuously charged cylinder of radius a with reduced linear charge density q. The parameters a and q for the B and Z forms were taken from X-ray data: a _B = 1nm, q _B = 4.2, a _z = 0.9 nm and q _z = 3.9. A simple theory shows that at low ionic strengths (when Debye screening length r _D>>a) the electrostatic free energy difference F ^el _Bz = F ^el _Z - F ^el _B increases with increasing ionic strength since q _B>q_z. At high ionic strengths (when r _D<<a) the F ^el _BZ would go on growing with increasing ionic strength if the inequality q _B/^a _B<q_z/a _z were valid. In the converse case when q _z/q _B<a_z/a _B the F ^el _BZ value decreases with increasing salt concentration at high ionic strength. Since X-ray data correspond to the latter case, theory predicts that the F ^el _BZ value reaches a maximum at an intermediate ionic strength of about 0.1 M (where r _D～a). We also performed rigorous calculations based on the Poisson-Boltzmann equation. These calculations have confirmed the above criterion of nonmonotonous behaviour of the F ^el _BZ value as a function of ionic strength. Different theoretical predictions for the B-Z transition in linear and superhelical molecules are discussed. Theory predicts specifically that at a very low ionic strength the Z form may prove to be more stable than the B form. Thus, one can observe the Z-B-Z transition with increasing ionic strength. In the light of our theoretical findings we discuss numerous experimental data on the B-Z transition in linear and superhelical DNA.     

Extended “Adsorption–Insertion” Model: A New Insight into the Sodium Storage Mechanism of Hard Carbons

Hard carbons (HCs) are promising anodes of sodium‐ion batteries (SIBs) due to their high capacity, abundance, and low cost. However, the sodium storage mechanism of HCs remains unclear with no consensus in the literature. Here, based on the correlation between the microstructure and Na storage behavior of HCs synthesized over a wide pyrolysis temperature range of 600–2500 °C, an extended “adsorption–insertion” sodium storage mechanism is proposed. The microstructure of HCs can be divided into three types with different sodium storage mechanisms. The highly disordered carbon, with d₀₀₂ (above 0.40 nm) large enough for sodium ions to freely transfer in, has a “pseudo‐adsorption” sodium storage mechanism, contributing to sloping capacity above 0.1 V, together with other conventional “defects” (pores, edges, heteroatoms, etc.). The pseudo‐graphitic carbon (d‐spacing in 0.36–0.40 nm) contributes to the low‐potential (<0.1 V) plateau capacity through “interlayer insertion” mechanism, with a theoretical capacity of 279 mAh g^?1 for NaC₈ formation. The graphite‐like carbon with d₀₀₂ below 0.36 nm is inaccessible for sodium ion insertion. The extended “adsorption–insertion” model can accurately explain the dependence of the sodium storage behavior of HCs with different microstructures on the pyrolysis temperature and provides new insight into the design of HC anodes for SIBs.     

Establishment and optimization of a regionally applicable maize gene-flow model

Because of the rapid development of transgenic maize, the potential effect of transgene flow on seed purity has become a major concern in public and scientific communities. Setting a proper isolation distance in field experiments and seed production is a possible solution to meet seed-quality standards and ensure adventitious contamination of products is below a specific threshold. By using a Gaussian plume model as basis and data recorded by meteorological stations as input, we have established a simple regionally applicable maize gene-flow model for prediction of the maximum threshold distances (MTD) at which gene-flow frequency is equal to or lower than a threshold value of 1 or 0.1 % (MTD_1%, MTD_0.1%). After optimization of the model variables, simulated outcrossing rate was a good fit to data obtained from field experiments (y = 1.156x, R ² = 0.8913, n = 30, P < P _0.01). In the process of model calibration, it was found that only 15.82 % of the total amount of the pollen released by each plant participated in the dispersal process. The variable “a” for genetic pollen competitiveness between donor and recipient was introduced into our model, for the “Zinuo18” and “Su608” used, “a” was 17.47. Finally, the model was successfully used in the spring maize-growing region of Northeast China. The range of MTD_1% and MTD_0.1% in this region varied from 10 m to 49 m and from 17 m to 125 m, respectively.     

The dichroic tensor of flexible helices

A statistical theory of the linear dichroism of DNA-like chains is presented for two models which are discrete versions of the wormlike coil. In the final form the linear dichroism of the entire chain is related directly to the dichroic properties of a chain segment (base pair). Though the derivations are somewhat complicated, the result [Eq. (28)] is simple and the required statistical parameters can be easily calculated for either model from measured values of the persistence length. In fact, for molecules as stiff as double-stranded DNA, the results can be reduced with good accuracy to the form showing that the “optical persistence” given on the left is directly proportional to the structural persistence, P_∞/l. As in previous theories the results are restricted to chains in their Gaussian limit.     

Haemocyanin oxygen binding and the physiological ecology of a range of talitroidean amphipods (Crustacea) I. pH,temperature, and l-lactate sensitivity

Summary The effect of pH, temperature, and l-lactate on the O₂ bindign properties of haemocyanin (Hc) from three talitroidean species i.e., the aquatic Apohyale pugettensis, the semi-terrestrial Megalorchestia californiana, and the semi-/euterrestrial Traskorchestia traskiana was studied. The Hc of A. pugettensis was characterized by a higher O₂ affinity (and more pronounced Bohr shift) than the Hc of either M. californiana or T. traskiana. Apohyale was the only species that possessed He that was sensitive to temperature change. Resuspending Hc from each of the three species in a stock Ringer's solution (based on the ionic composition of the haemolymph of T. traskiana) showed that the persistence of the difference in Bohr shift between Apohyale and the other two species was due to differences in the haemocyanins themselves and not attributable to their respective ionic environments. An inverse relationship was found between the cooperativity (n ₅₀) and pH of Hc from T. traskiana and A. pugettensis but not for M. californiana. In each case adding l-lactate increased Hc O₂ affinity, but this was most pronounced for A. pugettensis.Abbreviations Hc haemocyanin - STR stock Traskorchestia Ringer's solution     

Stacking Capacity and Chlorophyll Forms of Thylakoids in Normal and Mutant Maize Chloroplasts of Different Granum Content

Stacking of chloroplast lamellae, isolated from normal and carotenoid mutant chloroplasts of maize (Zea mays L.), was determined after a high-salt treatment. Stacking of isolated lamellae under favourable ionic conditions was almost identical with that occurring in intact chloroplasts; thus, differences in granum content could be attributed to the architectural properties of lamellae. Gaussian analyses, performed on the red band of room temperature absorption spectra, have shown that chloroplasts with lamellae of high stacking capacity contain relatively more Chl a₆₆₂ than chloroplasts containing lamellae of low stacking capacity. The presence of Chl a_705–708 was characteristic of preparations containing considerable amounts of stroma lamellae.     

Parameterization of chlorophyll a-specific absorption coefficients and effects of their variations in a highly eutrophic lake: a case study at Lake Kasumigaura, Japan

The chlorophyll a-specific absorption coefficient ( a_\textph^* ( l) a_{\text{ph}}^{*} \left( \lambda \right) ) in a highly eutrophic lake can show characteristics distinct from that in the ocean due to the differences in the structure and composition of phytoplankton. In this study, investigated the variation of a_\textph^* ( l) a_{\text{ph}}^{*} \left( \lambda \right) in Lake Kasumigaura, a highly eutrophic lake in Japan, in association with the package effect and the effect of accessory pigments, and carried out the parameterization of a_\textph^* ( l) a_{\text{ph}}^{*} \left( \lambda \right) . Although a_\textph^* ( l) a_{\text{ph}}^{*} \left( \lambda \right) did not vary spatially, it did show significant temporal variation, with a particularly high value after spring-bloom. This high a_\textph^* ( l) a_{\text{ph}}^{*} \left( \lambda \right) in spring was attributed to a lower package effect and a higher proportion of carotenoid than the other samples. Although the value of a_\textph^* ( l) a_{\text{ph}}^{*} \left( \lambda \right) was correlated with the concentration of chlorophyll-a (Chl-a), the correlation coefficient was lower than those reported in the ocean. Some lake-water samples showed variations of the package effect and the effect of accessory pigments that were independent of the concentration of Chl-a, and these independent variations resulted in the weak correlation between a_\textph^* ( l) a_{\text{ph}}^{*} \left( \lambda \right) and the concentration of Chl-a. Together, these results suggest that the factors controlling a_\textph^* ( l) a_{\text{ph}}^{*} \left( \lambda \right) in highly eutrophic lakes are distinct from that in ocean samples.     

2,3-Butanediol production from Jerusalem artichoke,Helianthus tuberosus,by Bacillus polymyxa ATCC 12 321. Optimization of k L a profile

Summary Optimization of d-(-)-2,3-butanediol production from the Jerusalem artichoke, Helianthus tuberosus, by Bacillus polymyxa ATCC 12 321 is described. The effects of initial sugar concentration and oxygen transfer rate were examined. The latter appears to be the most important parameter affecting the kinetics of the process. The best results (44 g·l^-1 2,3-butanediol, productivity of 0.79 g·l^-1·h^-1) were obtained by setting an optimal k _L a profile during batch culture.     

Formation of the isocyclic ring of chlorophyll by isolated Chlamydomonas reinhardtii chloroplasts

Chlamydomonas reinhardtii chloroplasts catalyzed two sequential steps of Chl biosynthesis, S-adenosyl-l-methionine:Mg-protoporphyrin IX methyltransferase and Mg-protoporphyrin IX monomethyl ester oxidative cyclase. A double mutant strain of C. reinhardtii was constructed which has a cell wall deficiency and is unable to form chlorophyll in the dark. Dark-grown cells were disrupted with a BioNeb nebulizer under conditions which lysed the plasma membrane but not the chloroplast envelope. Chloroplasts were purified by Percoll density gradient centrifugation. The purified chloroplasts were used to define components required for the biosynthesis of Mg-2,4-divinylpheoporphyrin a ₅ (divinyl protochlorophyllide) from Mg-protoporphyrin IX. Product formation requires the addition of Mg-protoporphyrin IX, the substrate for S-adenosyl-l-methionine:Mg-protoporphyrin IX methyltransferase which produces Mg-protoporphyrin IX monomethyl ester. The Mg-protoporphyrin IX monomethyl ester that is generated in situ is the substrate for Mg-protoporphyrin IX monomethyl ester oxidative cyclase. The reaction product was identified as Mg-2,4-divinylpheoporphyrin a ₅ (divinyl protochlorophyllide) by excitation and emission spectrofluorometry and HPLC on ion-paired reverse-phase and polyethylene columns. Mg-2,4-divinylpheoporphyrin a ₅ formation by the coupled enzyme system required O₂ and was stimulated by the addition of NADP⁺, an NADPH regenerating system, and S-adenosyl-l-methionine. Product was formed at a relatively steady rate for at least 60 min.Abbreviations MgDVP Mg-2,4-divinylpheoporphyrin a ₅ (divinyl protochlorophyllide) - SAM S-adenosyl-l-methionine     

Redistribution of hepatocyte chloride during l-alanine uptake

We used ion-sensitive, double-barrel microelectrodes to measure changes in hepatocyte transmembrane potential (V _m), intracellular K⁺, Cl^-, and Na⁺ activities (a ⁱ _k, a _Cl ⁱ and a _Na ⁱ ), and water volume during l-alanine uptake. Mouse liver slices were superfused with control and experimental Krebs physiological salt solutions. The experimental solution contained 20 m l-alanine, and the control solution was adjusted to the same osmolality (305 mOsm) with added sucrose. Hepatocytes also were loaded with 50 mm tetramethylammonium ion (TMA⁺) for 10 min. Changes in cell water volume during l-alanine uptake were determined by changes in intracellular, steady-state TMA⁺ activity measured with the K⁺ electrode. Hepatocyte control V _m was -33±1 mV. l-alanine uptake first depolarized V _m by 2±0.2 mV and then hyperpolarized V _m by 5 mV to-38±1 mV (n = 16) over 6 to 13 min. During this hyperpolarization, a _Na ⁱ increased by 30% from 19±2 to 25±3 mm (P < 0.01), and a _K ⁱ did not change significantly from 83±3 mm. However, with added ouabain (1 mm) l-alanine caused only a 2-mV increase in V _m, but now a _K ⁱ decreased from 61±3 to 54±5 mm (P < 0.05). Hyperpolarization of V _m by l-alanine uptake also resulted in a 38% decrease of a _Cl ⁱ from 20±2 to 12±3 mm (P < 0.001). Changes in V _m and V _Cl — V _m voltage traces were parallel during the time of l-alanine hyperpolarization, which is consistent with passive distribution of intracellular Cl^– with the V _m in hepatocytes. Added Ba²⁺ abolished the l-alanineinduced hyperpolarization, and a _Cl ⁱ remained unchanged. Hepatocyte water volume during l-alanine uptake increased by 12±3%. This swelling did not account for any changes in ion activities following l-alanine uptake. We conclude that hepatocyte a _K ⁱ is regulated by increased Na⁺-K⁺ pump activity during l-alanine uptake in spite of cell swelling and increased V _m due to increased K⁺ conductance. The hyperpolarization of V _m during l-alanine uptake provides electromotive force to decrease a _Cl ⁱ . The latter may contribute to hepatocyte volume regulation during organic solute transport.This work was supported by grant AA-08867 from the Alcohol, Drug Abuse, and Mental Health Association.