Biochemical and Population Genetics of the Rabbit, Oryctolagus cuniculus, Carbonic Anhydrases I and II, from the Iberian Peninsula and France

Available studies on the biochemical and electrophoretic characterization of European rabbit (Oryctolagus cuniculus) carbonic anhydrases I and II (CAI, CAII) show contradictory results about their relative electrophoretic mobility and substrate specificity. After positive identification of carbonic anhydrase activity by CO2 hydration, the differential esterase activity of CAI and CAII toward beta-napththyl acetate and flourescein diacetate,respectively, were used to identify the banding patterns corresponding to each locus. Electrophoretic and hybrid isoelectric focusing analyses of the CAI and CAII loci in 1 domestic and 19 wild rabbit populations led to the recognition of genetic polymorphism at the CAI locus and of extensive variability at the CAII locus. Four and nine alleles at the CAI and CAII loci, respectively, are described. The geographic distribution of genetic variability is consistent with the existence of two evolutionary groups within O. cuniculus.     

Conservationists,hunters and farmers: the European rabbit Oryctolagus cuniculus management conflict in the Iberian Peninsula

相似文献   

Reduced introgression of the Y chromosome between subspecies of the European rabbit (Oryctolagus cuniculus) in the Iberian Peninsula

The role of the Y chromosome in speciation is unclear. Hybrid zones provide natural arenas for studying speciation, as differential introgression of markers may reveal selection acting against incompatibilities. Two subspecies of the European rabbit (Oryctolagus cuniculus) form a hybrid zone in the Iberian Peninsula. Previous work on mitochondrial DNA (mtDNA), Y- and X-linked loci revealed the existence of two divergent lineages in the rabbit genome and that these lineages are largely subspecies-specific for mtDNA and two X-linked loci. Here we investigated the geographic distribution of the two Y chromosome lineages by genotyping two diagnostic single nucleotide polymorphisms in a sample of 353 male rabbits representing both subspecies, and found that Y chromosome lineages are also largely subspecies-specific. We then sequenced three autosomal loci and discovered considerable variation in levels of differentiation at these loci. Finally, we compared estimates of population differentiation between rabbit subspecies at 26 markers and found a surprising bimodal distribution of F(ST)values. The vast majority of loci showed little or no differentiation between rabbit subspecies while a few loci, including the SRY gene, showed little or no introgression across the hybrid zone. Estimates of population differentiation for the Y chromosome were surprisingly high given that there is male-biased dispersal in rabbits. Taken together, these data indicate that there is a clear dichotomy in the rabbit genome and that some loci remain highly differentiated despite extensive gene flow following secondary contact.     

Genetic Polymorphism of 11 Allozyme Loci in Populations of Wall Lizards (Podarcis sp.) from the Iberian Peninsula and North Africa

The taxonomy of Iberian and North African wall lizards (Podarcis sp.) has been controversial. Recently, morphological and mtDNA sequence data have provided new information on differentiation within these lacertids. To compare these results to those provided by nuclear markers, we investigated variation at 11 polymorphic protein loci using conventional electrophoresis and isoelectric focusing in 11 populations belonging to seven different mtDNA lineages. A total of 62 alleles were found. Populations belonging to the same mtDNA type presented high genetic similarity, whereas strong differentiation was observed between groups. These results are consistent with those previously obtained from morphological and mtDNA analysis and support the idea that Iberian and North African Podarcis are composed of several well-differentiated entities, some of which are already recognized as species, whereas others (belonging to the P. hispanica complex) clearly need taxonomic revision.     

Surveillance of Viruses in Wild Fish Populations in Areas around the Gulf of Cadiz (South Atlantic Iberian Peninsula)

This report describes a viral epidemiological study of wild fish around the Gulf of Cadiz (southwestern Iberian Peninsula) and is focused on infectious pancreatic necrosis virus (IPNV), viral hemorrhagic septicemia virus (VHSV), and viral nervous necrosis virus (VNNV). One fish species (Chelon labrosus) was sampled inside the gulf, at the mouth of the San Pedro River. Another 29 were sampled, in three oceanographic campaigns, at sites around the Bay of Cadiz. The fish were processed individually and subjected to isolation in cell culture and molecular diagnosis. VHSV was not isolated from any species. Thirteen IPNV-type isolates were obtained from barracuda (Sphyraena sphyraena), axillary seabream (Pagellus acarne), common two-banded seabream (Diplodus vulgaris), common pandora (P. erythrinus), Senegal seabream (D. bellottii), and surmullet (Mullus surmuletus). Six VNNV isolates were obtained from axillary seabream, common pandora, black seabream (Spondyliosoma cantharus), red mullet (Mullet barbatus), Lusitanian toadfish (Halobatrachus didactylus), and tub gurnard (Chelidonichtys lucerna). In the river mouth, viruses were detected only after reamplification, obtaining prevalence percentages of IPNV and VNNV (44.4 and 63.0%, respectively) much higher than those observed in the oceanographic campaigns (25.7 and 19.6%, respectively). The opposite results were obtained in the case of VHSV after reamplification: 11.1% in the river mouth and 43.6% in the oceanic locations. Analyzing the results with respect to the proximity of the sampling sites to the coast, an anthropogenic influence on wild fish is suggested and discussed. The type of viruses and the presence of natural reassortants are also discussed.     

Genetic Analysis and Mapping of Biochemical Markers in an F2 Intercross of Two Inbred Strains of the Rabbit (Oryctolagus cuniculus)

A total of 40 biochemical and four immunological markers found to be polymorphic in the rabbit in previous studies were screened in the AX/JU and IIIVO/JU inbred strains. Although the strains are considered unrelated, only eight (biochemical) markers were found to be polymorphic between the two strains. These eight markers were analyzed in an F₂ intercross population. Linkage was found for Est-5 and C on chromosome 1 and for Es-1, Est-2, Est-4, Est-6 and HP on linkage group VI. Two polymorphic markers, Es-3 and Mhr-1 could not be linked to any of the other markers.     

Purification, crystallization and preliminary analysis of hemoglobin from rabbit (Oryctolagus cuniculus)

Hemoglobin (Hb) is a tetrameric protein, which contains four heme prosthetic groups, and each one is associated with a polypeptide chain. Herein, we report the rabbit hemoglobin which has intrinsically high oxygen affinity and possess highest sequence identity with human hemoglobin. The purified hemoglobin has been tried to crystallize in different crystallization conditions owing to its formation of various crystal systems. The rabbit Hb crystals were grown using PEG 3,350 as the precipitant at 18 degrees C. The crystals of rabbit Hb belongs to triclinic space group P1 with one molecule (alpha2beta2) in the asymmetric unit.     

Variance Analysis of Immunoglobulin Alleles in Natural Populations of Rabbit (Oryctolagus Cuniculus): The Extensive Interallelic Divergence at the B Locus Could Be the Outcome of Overdominance-Type Selection

Population genetic data are presented which should contribute to evaluation of the hypothesis that the extraordinary evolutionary patterns observed at the b locus of the rabbit immunoglobulin light chain constant region can be the outcome of overdominance-type selection. The analysis of allele correlations in natural populations revealed an excess of heterozygotes of about 10% at the b locus while heterozygote excess was not observed at loci determining the immunoglobulin heavy chain. Data from the published literature, where homozygote advantage was suggested, were reevaluated and found in agreement with data here presented. Gene diversity was evenly distributed among populations and showed similarities with patterns reported for histocompatibility loci. Analysis of genotypic disequilibria revealed strong digenic associations between the leading alleles of heavy and light chain constant region loci in conjunction with trigenic disequilibria corresponding to a preferential association of b locus heterozygosity with the predominant allele of the heavy chain e locus. It is argued that this may indicate compensatory or nonadditive aspects of a putative heterozygosity enhancing mechanism, implying that effects at the light chain might be more pronounced in populations fixed for the heavy chain polymorphism.     

Colonization history of Mallorca Island by the European rabbit,Oryctolagus cuniculus,and the Iberian hare,Lepus granatensis (Lagomorpha: Leporidae)

The Mediterranean islands have a long history of human‐mediated introductions resulting in frequent replacements of their fauna and flora. Although these histories are sometimes well documented or may be inferred from paleontological studies, the use of phylogenetic and population genetic reconstruction methods provides a complementary perspective for answering questions related to the history of insular species. In the present study, we infer the colonization history of Mallorca (Balearic Islands) by the European rabbit (Oryctolagus cuniculus) and the Iberian hare (Lepus granatensis) using sequence variation of the mitochondrial DNA control region from continental and insular specimens (total of 489 sequences). Additionally, the taxonomic identity of Mallorcan L. granatensis was confirmed using a diagnostic nuclear marker. For both Mallorcan rabbits and hares, genetic diversity was comparable to the continental populations, suggesting the introduction of multiple lineages. Two Mallorcan haplogroups were found in hares, which likely correspond to two introduction events. Rabbits from Mallorca were identified as belonging to the subspecies Oryctolagus cuniculus cuniculus, and may have been originated both from Iberian and French populations. The molecular estimates of the timing of the colonization events of the Mallorcan lagomorphs are consistent with human‐mediated introductions by early settlers on the islands. © 2014 The Linnean Society of London, Biological Journal of the Linnean Society, 2014, 111 , 748–760.     

Plasma Esterase (ES) Polymorphism in the Tammar Wallaby, Macropus eugenii

The major plasma esterase in the tammar wallabywas identified as a carboxylesterase by inhibitionstudies and polymorphism with six variants was observedby isoelectric focusing (pH 4.2-4.9), followed by staining for esterase activity. Familystudies demonstrated an inheritance of six codominantalleles, ES^A,B,C,D,E,F, and populationstudies revealed marked differences in the allelefrequencies in five Australian populations of tammar wallabies.     

Effects of oral administration of aflatoxin B1 and fumonisin B1 in rabbits (Oryctolagus cuniculus)

The effects of prolonged oral administration (21 days) of fumonisin B₁ (FB₁) and aflatoxin B₁ (AFB₁) were studied in male New Zealand rabbits by clinical, pathological, biochemical and sphingolipid analyses. Twenty-four animals were randomly divided into the following four experimental groups: (A) 0 mg FB₁ + 0 μg AFB₁/(kg body weight (bw) day) (control); (B) 0 mg FB₁ + 30 μg AFB₁/(kg bw day); (C) 1.5 mg FB₁/(kg bw day) + 30 μg AFB₁/(kg bw day); (D) 1.5 mg FB₁/(kg bw day) + 0 μg AFB₁. Animals from group B and principally from group C presented clinical signs of intoxication. Rabbits from group C presented a lower body weight gain than controls. Differences were observed between intoxicated rabbits and controls with respect to absolute and relative liver and kidney weight, hepatic function, serum urea and creatinine levels and Sa/So ratio. The most frequent hepatic and renal injuries were vacuolar degeneration of the liver and kidney as shown by the histopathological and serum biochemical results. Combined administration of AFB₁ and FB₁ resulted in synergistic toxic effects both in the liver and in the kidney, but hepatic injuries were more marked.     

Peptidases A,B, C,D and S in the American mink: polymorphism and chromosome localization

Summary An electrophoretic analysis of peptidases was carried out in a population of American mink. Based on substrate and tissue specificities, as well as subunit composition, homologies were established between mink peptidases A, B, C, D and S and human peptidases. Polymorphism for peptidases B and D was demonstrated for minks of three coat colour types. Breeding data indicated that the peptidase variations are under the control of allele pairs at distinct autosomal loci designated as PEPB and PEPD, respectively. Using a panel of American mink-Chinese hamster hybrid clones, the gene for PEPB was assigned to mink chromosome 9.     

Pollen morphology in Cytisus (Papilionoideae,Leguminosae) from Morocco and the Iberian Peninsula

Although it is generally accepted that the tribe Genisteae has rather homogeneous pollen, we have found considerable variation in pollen size and morphology in Cytisus and related genera (Argyrocytisus and Chamaecytisus), which match taxonomic groups defined on morphological grounds. The results of Principal Component Analysis of pollen characteristics show the following: Cytisus Sect. Alburnoides is well-delimited, with the smallest pollen grains and the simplest pattern in the tectum, fossulate-perforate to perforate; No separation of C. villosus (Sect. Cytisus) from Sect. Alburnoides is observed; Cytisus Sect. Spartopsis, with the largest pollen grains and reticulate to reticulate-fossulate ornamentation, forms an isolated group; C. fontanesii (Sect. Heterocytisus) stands apart from other Cytisus species by its homogeneous ornamentation and the perforate instead of psilate-punctate margo. Thus, the pollen data supports its transfer to the separated genus Chronanthos; Pollen ornamentation and morphology also support the separation of Argyrocytisus battandieri and Chamaecytisus mollis from Cytisus.     

Postglacial dispersal of the European rabbit (Oryctolagus cuniculus) on the Iberian peninsula reconstructed from nested clade and mismatch analyses of mitochondrial DNA genetic variation

Nested clade analysis was applied to cytochrome b restriction site data previously obtained on 20 natural populations of the European rabbit across the Iberian Peninsula to test the hypothesis of postglacial dispersal from two main refugia, one in the northeast and the other in the southwest. Apart from historical fragmentation that resulted in geographic discontinuity of two distinct mitochondrial DNA (mtDNA) clades A and B, patterns of haplotype genetic variability have been shaped mostly by restricted gene flow via isolation by distance. The distribution of tip versus interior haplotypes suggests that dispersal occurred from both the southwestern and northeastern groups. Dispersal from the southwest had a north and northwest direction, whereas from the northeast it had mostly a western and southern orientation, with subsequent overlap in a southeastern-northwestern axis across the Iberian Peninsula. The analysis of the pairwise mismatch distribution of a 179-181-bp fragment of the mtDNA control region, for seven of those populations, further supports the idea that major patterns of dispersal were in the direction of central Iberia. Additionally, rabbit populations do not show signs of any significant loss of genetic diversity in the recent past, implying that they maintained large population sizes and structure throughout the ice ages. This is congruent with the fact that the Iberian Peninsula was itself a glacial refugium during Quaternary ice ages. Nonetheless, climatic oscillations of this period, although certainly milder than in northern Europe, were sufficient to affect the range distributions of Iberian organisms.     

A new dugong species (Sirenia,Dugongidae) from the Eocene of Catalonia (NE Iberian Peninsula)

A new stem dugongid species, Prototherium ausetanum sp. nov. (Dugongidae, Halitheriinae), is described based on a cranium from the middle Eocene of Mas Vilageliu (Tona, NE Iberian Peninsula). The new species displays a combination of features that enables its distinction from other halitheriines, including Prototherium veronense (type species of the genus), Prototherium? intermedium (which likely belongs to a different genus), and Prototherium? montserratense (here considered a nomen dubium), as well as Eotheroides spp. In overall morphology (e.g., dolichocephaly) the new species more closely resembles species previously included in Prototherium. However, a cladistic analysis based on craniodental features recovers the new species as the sister taxon of Eotheroides aegyptiacum (type species of this genus), further constituting a polytomy with P. veronense, Eotheroides lambondrano and the remaining Halitheriinae. Our analysis further indicates that P.? intermedium is more derived than other species of Prototherium, but it does not conclusively resolve the phylogenetic relationships between the included species of Prototherium and Eotheroides. A deeper taxonomic revision of these two genera would be required in order to better resolve the phylogeny of early dugongids.     

Sociality, time and space in a sparse population of rabbits (Oryctolagus cuniculus)

This 10-year study describes a sparse population of rabbits ( Oryctolagus cuniculus ) living in small, semi-isolated groups on river flats with some scrub in an otherwise forested valley. The rabbits lived above ground in the scrub by day and fed in the open at night. They bred in isolated 'stops' dug in the shingle often far from suitable grazing for the young. Many stops collapsed, killing the young. Home ranges were recorded by radio telemetry. Bucks had larger ranges than does and spent less time in the scrub. Adults of both sexes were sedentary for life. Some bucks travelled > 500 m at night. Most ranges were too large to be defended strictly; night feeding grounds were often communal. In the evening, adult rabbits spent 44% of the time feeding and 33% inactive. Social interactions were frequent. At all seasons, in the evening most adult rabbits were seen singly or as pairs. Pairs seldom remained intact for > 12 months even when both partners were alive. The buck of the pair was usually older than the doe because bucks outlived does. The adult survival rate was about 0.80 for bucks, 0.55 for does. Four bucks lived for > 7 years. Few young survived for long after leaving the nest; many were killed by predators. Dungheaps, used for 60% of the droppings, were concentrated near the scrub where rabbits congregated in the evening. The behaviour of these rabbits differed in many ways from that of rabbits in enclosures or at higher density in the wild.     

First record of Latonia gigantea (Anura,Alytidae) from the Iberian Peninsula

The single extant species of the anuran genus Latonia lives in Israel, but in the fossil record the genus is known mainly from Europe, spanning from the Oligocene to the early Pleistocene. Here we describe new remains of Latonia from the early to late Miocene of the Vallès-Penedès Basin (NE Iberian Peninsula), coming from the following localities: Sant Mamet (MN4), Sant Quirze and Trinxera del Ferrocarril (MN7+8), and Castell de Barberà, Can Poncic 1 and Can Llobateres 1 (MN9). Fossils from the late Aragonian and early Vallesian are attributed to Latonia gigantea mainly because of the morphology of the ornamentation that covers the maxillae. In turn, an ilium from Sant Mamet is not diagnostic at the specific level and is assigned only to the genus Latonia. The newly reported remains represent the first record of L. gigantea in the Iberian Peninsula, where Latonia was previously known by a single report of Latonia cf. ragei from Navarrete del Río (MN2) and remains from other localities unassigned to species. Moreover, the Vallès-Penedès remains represent one of the southernmost records of the species known thus far. The presence of Latonia in these localities confirms the humid and warm environment suggested by the recorded mammal fauna.