A catabolic pathway for the degradation of chrysene by Pseudoxanthomonas sp. PNK-04

The chrysene-degrading bacterium Pseudoxanthomonas sp. PNK-04 was isolated from a coal sample. Three novel metabolites, hydroxyphenanthroic acid, 1-hydroxy-2-naphthoic acid and salicylic acid, were identified by TLC, HPLC and MS. Key enzyme activities, namely 1-hydroxy-2-naphthoate hydroxylase, 1,2-dihydroxynaphthalene dioxygenase, salicylaldehyde dehydrogenase and catechol-1,2-dioxygenase, were noted in the cell-free extract. These results suggest that chrysene is catabolized via hydroxyphenanthroic acid, 1-hydroxy-2-naphthoic acid, salicylic acid and catechol. The terminal aromatic metabolite, catechol, is then catabolized by catechol-1,2-dioxygenase to cis,cis-muconic acid, ultimately forming TCA cycle intermediates. Based on these studies, the proposed catabolic pathway for chrysene degradation by strain PNK-04 is chrysene → hydroxyphenanthroic acid → 1-hydroxy-2-naphthoic acid → 1,2-dihydroxynaphthalene → salicylic acid → catechol →cis,cis-muconic acid.     

Characterization of biosurfactant produced by Pseudoxanthomonas sp. PNK-04 and its application in bioremediation

Biosurfactant producing bacterium was identified as Pseudoxanthomonas sp. PNK-04 based on morphological, physiological, biochemical tests and 16S rRNA gene sequencing. This strain was screened for biosurfactant production using different carbon sources by measuring the surface tension of the medium at different time intervals, and hemolytic activity. The produced biosurfactant was found to be a rhamnolipid based on the formation of dark blue haloes around the colonies in CTAB–methylene blue agar plates and the content of rhamnose sugar. The rhamnolipids produced by this bacterium were found to contain mono- and dirhamnose units linked to β-hydroxy alkonic acids containing 8–12 carbon atoms. This biosurfactant has high emulsifying activity when compared to chemical surfactants such as Tween-80 and Triton X-100 with respect to aliphatic and aromatic hydrocarbons. Further, the biosurfactant stimulates the degradation of 2-chlorobenzoic acid, 3-chlorobenzoic acid and 1-methyl naphthalene by Pseudoxanthomonas sp. PNK-04 probably by aiding in the uptake and increasing the solubility.     

Congener Selectivity During Polychlorinated Biphenyls Degradation by Enterobacter sp. LY402

The relationship between the selectivity of a particular polychlorinated biphenyls (PCBs) congener and its biodegradability under the same concentration, especially by Enterobacter sp. LY402, is less well studied. To measure congener selectivity of Enterobacter sp. LY402, several influencing factors were studied. The results showed LY402 effectively degraded coplanar 3,4,3',4'-chlorobiphenyl (CB) at a concentration of 0.05 μM, but not 0.5 μM. The degradation rates of 2,4,5,2',3'-CB and 2,4,5,2',4',5'-CB were increased significantly when the sample constituents were changed from 12 to 5 congeners or to one congener. This indicated that bioremediation of individual congener was affected by other congeners present in the mixture. Moreover, for PCBs containing one chlorine on each phenyl ring, the reactivity preference of LY402 was 2,2'-CB ≥ 3,3'-CB ? 4,4'-CB. For two ortho chlorines congeners of PCBs, 2,2'-CB was degraded faster than 2,6-CB. Although 2,6-CB and 4,4'-CB were poorly degraded, the addition of one (i.e., 2,4,4'-CB and 2,6,3'-CB) or two more chlorines (i.e., 2,4,2',4'-CB) on the phenyl ring significantly increased their biodegradability. In addition, comparing the two congeners of ortho-meta-chlorinated biphenyl, 2,3,2',3'-CB with neighbor meta chlorines was degraded slower than 2,5,2',5'-CB with interval meta chlorines. All these indicated that the transformation rates of PCBs were not consistent with the number of chlorines, and PCBs containing the same numbers of chlorines but at different positions also resulted in different conversions. In principle, the extents of effect caused by the position of chlorine substituents on the degradation of PCBs by LY402 were ortho- > meta- > para-CB. In conclusion, the congener selectivity of LY402 was determined by many factors, including the composition of the congeners, their concentrations in the mixture and location and number of chlorine substituents on the phenyl rings.     

Uranium accumulation by immobilized cells of aCitrobacter sp.

Uranium was removed from challenge flows presented to immobilized cells of aCitrobacter sp. In excess of 90% of the presented metal was recovered, giving high yields of accumulated metal which could be subsequently released from the immobilized cellsin situ.     

Strontium accumulation by immobilized cells of aCitrobacter sp.

Summary Immobilized cells of aCitrobacter sp. accumulated strontium at alkaline pH. Under optimum conditions in excess of 90% of the metal was removed from challenge flows.     

Biological removal of pyridine in heavy oil byRhodococcus sp. KCTC 3218

The removal of organic nitrogen compounds present in crude perroleum and shale oils poses a challenging problem in petroleum industries. The deleterious effect of nitrogen compounds on cracking catalysts and the indication that they contribute to gum formation in gasolines are some of these aspects. Pyridine, a representative nitrogen compound in gaavy oil—was degraded byRhodoccus sp. KCTC 3218 in a water-heavy oil two-phase system. The pyridine degradation rate was affected by the presence of hydrocarbons such as n-hexadecane. This microorganism formed flocs which could be a barrier to mass transfer between the cells in flocs and the pyridine dissolved in water. This problem could be overcome by the addition of a surfactant such as Triton X-100. The ratio of water to heavy oil was important to separate the heavy oil phase from the water phase after treating the heavy oil. The culture medium was emulsified by a sort of biosurfactant secreted by this microorganism. The emulsified oil phase returned to its natural state when the ratio of water to heavy oil was 1.5. Above this ratio, the emulsified oil phase remained an emulsion after decantation. Pyridine in heavy oil was completely degraded in 15 hr at this water to heavy oil ratio of 1.5 when the concentration of pyridine in heavy oil was 700 ppm and the cell concentration was 0.32 g DCW/L.     

Thermostable amylase production by immobilized thermophilic Bacillus sp.

Agar, agarose and alginate immobilized cells of thermophilic Bacillus sp. WN11 produced 7.0, 6.2, and 10.5 U/ml of thermostable amylase in shake flasks, respectively. Alginate entrapped cells released high level of amylase (10.5 U/ml) than freely suspended cells (8.0 U/ml). Amylase production was stable in five successive batches with productivity of 9-12 U/ml for alginate, 5.5-8.8 U/ml for agar, and 4.8-8.0 for agarose immobilized cells.     

Ammonia-nitrogen and orthophosphate removal by immobilized Scenedesmus sp. isolated from municipal wastewater for potential use in tertiary treatment

Scendesmus sp. isolated from municipal wastewater, entrapped in calcium alginate as algal sheets was employed to remove inorganic nutrients (N and P) from artificial and real domestic secondary effluents in parallel-plate bioreactor after starvation. The key factors affecting the removal efficiency (NH4+-N and PO4(3-)-P), system stability and reuse efficiency of screens were studied and discussed. It has been shown that cell density in the mixture of algal gel was the key factor compared with the thickness of the gel and the cell density of the reactor. A complete removal of NH4+-N and PO4(3-)-P was achieved within 4h of treatment in parallel bioreactors with the optimal cell density in the mixture of algal (2 x 10(8) algae mL(-1)) and 3mm gel sheets after second cycle. Nine cycles of wastewater treatment in 21 days were accomplished, holding higher removal efficiency. NH(4)(+)-N removal efficiency was 99.1% after 105 min, 100% after 135 min, PO4(3-)-P removal efficiency was 100% after 15 min in domestic secondary effluents. Immobilized Scendesmus sp. is shown to have great potentialities for removal of inorganic nitrogen and phosphorus from treated effluents.     

Hydrogen production by an immobilized cyanobacterium,Lyngbya sp.

The mesophilic, alkaliphilic, filamentous, and nonheterocystous fresh water cyanobacterium, Lyngbya sp. strain no. 108, was immobilized on calcium alginate gel. The optimum immobilizing conditions for hydrogen evolution were: 4% (w/v) alginate; 0.05 M CaCl₂; and 0.11 mg dry microbial cells/ml gel. The pH, temperature, and light intensity were 9.0, 30°C, and 1,000 1x, respectively. The optimum conditions for growth of immobilized cells were pH 9.5, 27°C, and 1,000 1x. Immobilized cells produced 25% more hydrogen than did free cells. The cells were incubated in a reaction mixture for hydrogen evolution and recultivated for 5 days in nitrogen-limited medium. These incubation and reactivation steps were repeated 3 times, after which, the cell yield and the amount of hydrogen evolution were 2.6- and 3.4-fold higher, respectively.     

Kinetics of p-cresol degradation by an immobilized Pseudomonas sp.

A p-cresol (PCR)-degrading Pseudomonas sp. was isolated from creosote-contaminated soil and shown to degrade PCR by conversion to protocatechuate via p-hydroxybenzaldehyde (PBA) and p-hydroxybenzoate (PHB). Cells of the Pseudomonas sp. were immobilized in calcium alginate beads and in polyurethane foam. The relationship between the PCR concentration and the PCR transformation rate was investigated in batch and continuous culture bioreactors. The biodegradation kinetics of PBA and PHB also were investigated. In batch culture reactors, the maximum PCR degradation rate (Vmax) for the alginate-immobilized Pseudomonas sp. cells was 1.5 mg of PCR g of bead-1 h-1 while the saturation constant (Ks) was 0.22 mM. For PHB degradation, the Vmax was 0.62 mg of PHB g of bead-1 h-1 while the Ks was 0.31 mM. For polyurethane-immobilized Pseudomonas sp. cells, the Vmax of PCR degradation was 0.80 mg of PCR g of foam-1 h-1 while the Ks was 0.28 mM. For PHB degradation, the Vmax was 0.21 mg of PHB g of foam-1 h-1 and the Ks was 0.22 mM. In a continuous column alginate bead reactor, the Vmax for PCR transformation was 2.6 mg g of bead-1 h-1 while the Ks was 0.20 mM. The Vmax and Ks for PBA transformation in the presence of PCR were 0.93 mg g of bead-1 h-1 and 0.063 mM, respectively. When PHB alone was added to a reactor, the Vmax was 1.48 mg g of bead-1 h-1 and the Ks was 0.32 mM.(ABSTRACT TRUNCATED AT 250 WORDS)     

固定化脂肪酶选择性水解废弃鱼油富集DHA和EPA甘油酯

以鱼油下脚料为原料．以固定化Geotrichum sp．脂肪酶为催化剂,选择性水解粗鱼油,使目标脂肪酸EPA和DHA富集于甘油骨架上,显著提高了甘油酯中EPA和DHA的质量分数。通过单因素试验和响应面分析得出最佳水解条件：2g粗鱼油,2．5g水,221．3U脂肪酶,30℃,反应11．7h。最佳条件下的水解度为42．1％。EPA和DHA质量分数分别为7．8％和41．1％。经过二次水解后,水解度提高到45．9％,EPA和DHA质量分数分别提高到8．5％和42％。与初始鱼油相比,分别提高了2倍和2．2倍。     

Pseudoxanthomonas icgebensis sp. nov., isolated from the midgut of Anopheles stephensi field-collected larvae

A Gram-negative, aerobic, golden yellow, rod-shaped bacterium, a strain designated ICGEB-L15(T), was isolated from the larval midgut of Anopheles stephensi captured in District Jhajjar, Haryana, India. The strain ICGEB-L15(T) grows at 30-50°C (optimum 30-37°C), pH 6.5-8.5 (optimum 7.0-8.0) and in the presence of 2% NaCl. The major fatty acids were iso-C(15:0) (22.5% of total fatty acid), anteiso-C(15:0) (16.5%), iso-C(17:1) 9c (10.3%), iso-C(16:0) (7.3%), C(16:0) (6.1%), and iso-C(11:0) (5.3%). The strain showed the highest 16S rRNA gene sequence similarities with the type strains Pseudoxanthomonas daejeonensis KCTC 12207(T) (97.4%), Pseudoxanthomonas kaohsiungensis J36(T) (97.17%), and Pseudoxanthomonas mexicana AMX 26B(T) (97.11%). The DNA relatedness between ICGEB-L15(T) and Pseudoxanthomonas daejeonensis KCTC 12207(T), Pseudoxanthomonas kaohsiungensis J36(T) and Pseudoxanthomonas mexicana AMX 26B(T) was 24.5%, 28.2%, and 33.6%, respectively. The G+C content of genomic DNA was 69.9 mol%. The major isoprenoid quinone of strain ICGEB-L15(T) was Q-8. The strain ICGEB-L15(T) represents a novel species of the genus Pseudoxanthomonas based on physiological, biochemical and phylogenetic properties; therefore, the name Pseudoxanthomonas icgebensis sp. nov. is proposed. The type strain is ICGEB-L15(T) (=KACC 14090(T) =DSM 22536(T)).     

Nitrate removal in aquariums by immobilized pseudomonas

Biological denitrification of nitrate to nitrogen gas was examined in a freshwater and a marine aquarium. Nitrate removal in the aquarium water was accomplished with denitrifiers immobilized in a freeze-dried, alginate-starch matrix. Starch served as a bacterial carbon source and cellular matrix-strengthening filler. Freeze-dried beads were placed in canisters through which nitrate-rich aquarium water was recirculated. The freshwater aquarium (100 L) contained goldfish (Carassius auratus) at a total biomass of 390 g, whereas cichlids (Oreochromis mossambicus) were kept at a similar stocking density in the marine aquarium. Denitrification resulted in low ambient nitrate concentrations in both aquariums. The specific nitrate removal rate of the freshwater beads was significantly higher (50 microg of NO(3)-N/bead/day) than that of seawater beads (5 microg of NO(3)-N/bead/day). Differences in ambient nitrate concentrations between both aquariums and diffusion limitation of nitrate to the active denitrification sites within the beads might explain these observed differences.     

Heavy metal accumulation by immobilized cells of a Citrobacter sp.

Summary Immobilized cells of a strain of a Citrobacter sp. were effective in the removal of cadmium, lead and copper from single and mixed metal flows, and from synthetic effluents. About 80% of the presented metal was removed, and this was increased to nearly 100% by the incorporation of additional immobilized cell column units.     

Promoting the simultaneous removal of Microcystis bloom and microcystin-RR by Bacillus sp. AK3 immobilized on floating porous glass pellets

Journal of Applied Phycology - Harmful cyanobacterial blooms are global pollution problems. Algicidal bacteria, an effective method to control cyanobacteria that is widely studied in the...     

Production of xylanases by immobilized Aspergillus sp. using lignocellulosic waste

In shake flasks immobilized Aspergillus terreus and Aspergillus niger produced 29IU/ml, 26.7IU/ml xylanases at 10mg/ml, 14mg/ml wheat bran concentration after 48 and 60h of incubation at 37°C respectively. In repeated batch fermentation of immobilized Aspergillus sp. the same biocatalyst could be used for three successive cycles.     

Biodegradation of pyridine by freely suspended and immobilized Pimelobacter sp.

Freely suspended and Ca-alginate-immobilized cells of Pimelobacter sp. were used for degradation of pyridine. When the pyridine concentration was up to 2 g l^–1, freely suspended cells completely degraded pyridine regardless of the initial cell concentrations used. However, when the pyridine concentration increased to 4 g l^–1, the initial cell concentration in freely suspended cell culture should be higher than 1.5 g dry cell weight l^–1 for complete degradation of pyridine. In addition, a freely suspended cell culture with a high initial cell concentration resulted in a high volumetric pyridine-degradation rate, suggesting the potential use of immobilized cells for pyridine-degradation. When the immobilized cells were used for pyridine-degradation, neither specific pyridine-degradation rate nor tolerance against pyridine was improved. However, a high volumetric pyridine-degradation rate in the range 0.082–0.129 g l^–1 hr^–1 could be achieved by the immobilized cells because of the high cell concentration. Furthermore, when the immobilized cells were reused in degrading pyridine at a concentration of 2–4 g l^–1 they did not lose their pyridine-degrading activity for 2 weeks. Taken together, the data obtained here showed the feasibility of using immobilized cells for pyridine-degradation.     

Nitrate and phosphate removal by chitosan immobilized Scenedesmus

The effect of chitosan immobilization of Scenedesmus spp. cells on its viability, growth and nitrate and phosphate uptake was investigated. Scenedesmus sp. (strains 1 and 2) and Scenedesmus obliquus immobilized in chitosan beads showed high viability after the immobilization process. Immobilized Scenedesmus sp. strain 1 had a higher growth rate than its free living counterpart. Nitrate and phosphate uptake by immobilized cells of Scenedesmus sp. (strain 1), freely suspended cells and blank chitosan beads (without cells) were evaluated. Immobilized cells accomplished a 70% nitrate and 94% phosphate removal within 12h of incubation while free-living cells removed 20% nitrate and 30% phosphate within 36 h of treatment. Blank chitosan beads were responsible for up to 20% nitrate and 60% phosphate uptake at the end of the experiment. Chitosan is a suitable matrix for immobilization of microalgae, particularly Scenedesmus sp., but this system should be improved before its application for water quality control.     

Steroid transformation using magnetically immobilized Mycobacterium sp.

Mycobacterium sp. (NRRL-B 3683) has been immobilized by adhesion of magnetic materials of submicron size to the bacterial surface. Preparations based on laboratory-prepared magnetic oxide that had been derivatized with hydrophobic octyltrichlorosilane showed the best properties. The magnetically immobilized bacteria were used for side-chain degradation of cholesterol into androsta-1,4-diene-3,17-dione. The magnetic bacteria behaved as free cells in the transformation media and no mass transfer limitations were observed. The magnetic bacteria could be used repeatedly without any cell loss, the cells being retrieved at the end of each transformation cycle by a magnet.