The native–invasive balance: implications for nutrient cycling in ecosystems

We conducted single- and mixed-litter experiments in a hardwood forest in Long Island, New York, using leaf litter from phylogenetically paired native and invasive species. We selected long-established, abundant invasive species with wide-ranging distributions in the eastern United States that likely make substantial contributions to the litter pool of invaded areas. Overall, leaf litter from invasive species differed from native litter, though differences varied by phylogenetic grouping. Invasive litter had lower carbon:nitrogen ratios (30.9 ± 1.96 SE vs. 32.8 ± 1.36, P = 0.034) and invasive species lost 0.03 ± 0.007 g of nitrogen and had 23.4 ± 4.9 % of their starting mass remaining at the end of 1 year compared with a loss of 0.02 ± 0.003 g nitrogen and 31.1 ± 2.6 % mass remaining for native species. Mixing litter from two species did not alter decomposition rates when native species were mixed with other native species, or when invasive species were mixed with other invasive species. However, mixing litter of native and invasive species resulted in significantly less mass and nitrogen loss than was seen in unmixed invasive litter. Mixtures of native and invasive litter lost all but 47 ± 2.2 % of initial mass, compared to 37 ± 5.8 % for invasive litter and 50 ± 5.1 % for native litter. This non-additive effect of mixing native and invasive litter suggests that an additive model of metabolic characteristics may not suffice for predicting invasion impacts in a community context, particularly as invasion proceeds over time. Because the more rapid decomposition of invasive litter tends to slow to rates typical of native species when native and invasive litters are mixed together, there may be little impact of invasive species on nutrient cycling early in an invasion, when native leaf litter is abundant (providing litter deposition is the dominant control on nutrient cycling).     

Mapping ecosystem functions to the valuation of ecosystem services: implications of species–habitat associations for coastal land-use decisions

Habitats and the ecosystem services they provide are part of the world’s portfolio of natural capital assets. Like many components of this portfolio, it is difficult to assess the full economic value of these services, which tends to over-emphasize the value of extractive activities such as coastal development. Building on recent ecological studies of species–habitat linkages, we use a bioeconomic model to value multiple types of habitats as natural capital, using mangroves, sea grass, and coral reefs as our model system. We show how key ecological variables and processes, including obligate and facultative behaviors map into habitat values and how the valuation of these ecological processes can inform decisions regarding coastal development (habitat clearing). Our stylized modeling framework also provides a clear and concise road map for researchers interested in understanding how to make the link between ecosystem function, ecosystem service, and conservation policy decisions. Our findings also highlight the importance of additional ecological research into how species utilize habitats and that this research is not just important for ecological science, but it can and will influence ecosystem service values that, in turn, will impact coastal land-use decisions. While refining valuation methods is not necessarily going to lead to more rational coastal land-use decisions, it will improve our understanding on the ecological–economic mechanisms that contribute to the value of our natural capital assets. Electronic supplementary material  The online version of this article (doi:) contains supplementary material, which is available to authorized users.     

Strength of phytoplankton–nutrient relationship: evidence from 13 biomanipulated ponds

Phytoplankton biomass–nutrient relationship is widely used by lake managers to assess the eutrophication impact and to set the nutrient targets. Submerged vegetation and large zooplankton grazing have long been identified as factors weakening the relationship by decoupling phytoplankton from nutrients. Proving this decoupling unambiguously is difficult because, in natural systems, many factors act together, blurring each other’s effect. In this article, we present the results of continuous monitoring of 13 ponds where the effects of submerged vegetation and zooplankton grazing were enhanced by biomanipulation (fish removal). The monitoring allowed these effects to be assessed and compared with the pre-biomanipulation situations when phytoplankton biomass was mainly nutrient driven. The comparison showed a strong weakening effect of submerged vegetation and large zooplankton grazing on the chlorophyll a–total phosphorus relationship suggesting that a considerable degree of ecological quality of ponds affected by eutrophication can be restored even when nutrient-loading reduction is not feasible.     

Plant–microbe interactions as drivers of ecosystem functions relevant for the biodegradation of organic contaminants

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Water availability drives gradients of tree diversity,structure and functional traits in the Atlantic–Cerrado–Caatinga transition,Brazil

Aims Climate and soil are among the most important factors determining variation in tree communities, but their effects have not been thoroughly elucidated to date for many vegetation features. In this study, we evaluate how climate and soil gradients affect gradients of vegetation composition, species diversity and dominance, structure and functional traits (seed mass and wood density) using over 327 000 trees in 158 sites distributed along environmental gradients in the transitions among the Atlantic forest, Cerrado and Caatinga in Minas Gerais State (MG), Brazil (nearly 600 000 km2).     

Leaf phenological shifts and plant–microbe–soil interactions can determine forest productivity and nutrient cycling under climate change in an ecosystem model

Climate change is expected to affect tree leaf phenology by extending the length of the growing season (LGS), which will affect the productivity and nutrient cycling of forests. Interactions between plants and microbes will mediate the ecosystem processes further through microbe-mediated plant–soil feedback (PSF). To investigate the possible consequences of interactions between the extension of the growing season (GS) and PSF under various conditions, we developed a simple theoretical model (LGS-PSF model). The LGS-PSF model predicts that microbe-mediated PSF will intensify the negative effects of increasing temperature on the size of soil carbon stock when compared with simulations without the PSF effect. The combined effects of increasing temperature and PSF on the size of soil carbon stock occurs through enhanced activity of individual microbes and increased microbial population size. More importantly, the model also demonstrated that a longer GS mitigates this negative effect on carbon accumulation in soil, not through increased net primary production, but through intensified competition for nutrients between plants and microbes, thus suppressing microbial population growth. Our model suggested that the interactive effects of the LGS and PSF on carbon and nitrogen dynamics in forests should be incorporated into larger scale quantitative models for better forecasting of future forest functions under climate change.     

Leaf herbivory and monodominance in a Cerrado–Amazonia transitional forest,Mato Grosso,Brazil

Monodominant tropical forests occur on several continents, including the Brazilian Amazon. In this study, we tested the hypothesis that seedling escape from leaf herbivory contributes to the maintenance of the monodominant Brosimum rubescens forest. The study was undertaken both in a monodominant forest of B. rubescens and in an adjacent seasonal forest in the transitional zone between the Cerrado and the Amazonian forest biomes. Percentage of leaf area damaged and herbivory rates were evaluated on young and mature leaves of seedlings of Brosimum rubescens, Protium pilosissimum and Tetragastris altissima in the understory and in the gap between the monodominant and seasonal forests. Little evidence of any significant relationship between leaf herbivory and seedling density indicates that the monodominant species does not follow the hypothesized pattern of an intensive herbivore attack in areas of higher seedling density. The escape of Brosimum rubescens from herbivore pressure under conditions of high seedling density may be part of a set of conditions that determine the maintenance of this monodominant forest.     

Predator‐driven elemental cycling: the impact of predation and risk effects on ecosystem stoichiometry

Empirical evidence is beginning to show that predators can be important drivers of elemental cycling within ecosystems by propagating indirect effects that determine the distribution of elements among trophic levels as well as determine the chemical content of organic matter that becomes decomposed by microbes. These indirect effects can be propagated by predator consumptive effects on prey, nonconsumptive (risk) effects, or a combination of both. Currently, there is insufficient theory to predict how such predator effects should propagate throughout ecosystems. We present here a theoretical framework for exploring predator effects on ecosystem elemental cycling to encourage further empirical quantification. We use a classic ecosystem trophic compartment model as a basis for our analyses but infuse principles from ecological stoichiometry into the analyses of elemental cycling. Using a combined analytical‐numerical approach, we compare how predators affect cycling through consumptive effects in which they control the flux of nutrients up trophic chains; through risk effects in which they change the homeostatic elemental balance of herbivore prey which accordingly changes the element ratio herbivores select from plants; and through a combination of both effects. Our analysis reveals that predators can have quantitatively important effects on elemental cycling, relative to a model formalism that excludes predator effects. Furthermore, the feedbacks due to predator nonconsumptive effects often have the quantitatively strongest impact on whole ecosystem elemental stocks, production and efficiency rates, and recycling fluxes by changing the stoichiometric balance of all trophic levels. Our modeling framework predictably shows how bottom‐up control by microbes and top‐down control by predators on ecosystems become interdependent when top predator effects permeate ecosystems.     

Kinetics of the lamellar gel–fluid transition in phosphatidylcholine membranes in the presence of sugars

Phase diagrams are presented for dipalmitoylphosphatidylcholine (DPPC) in the presence of sugars (sucrose) over a wide range of relative humidities (RHs). The phase information presented here, determined by small angle X-ray scattering (SAXS), is shown to be consistent with previous results achieved by differential scanning calorimetry (DSC). Both techniques show a significant effect of sucrose concentration on the phase behaviour of this phospholipid bilayer. An experimental investigation into the effect of sugars on the kinetic behaviour of the gel to fluid transition is also presented showing that increasing the sugar content appears to slightly increase the rate at which the transition occurs.     

Induction of RpoS-dependent functions in glucose-limited continuous culture: what level of nutrient limitation induces the stationary phase of Escherichia coli?

treA and osmY expression and RpoS protein levels were investigated in glucose-limited continuous culture. The level of induction of these stationary-phase markers became as high during growth at a D of 0.1 to 0.2 h(-1) as in carbon-starved batch cultures but only in rpoS+ bacteria. The stress protectant trehalose was actually produced at higher levels at low growth rates than in stationary-phase cultures. The pattern of induction of RpoS-dependent activities could be separated from those regulated by cyclic AMP (cAMP) or endoinduction, and the induction occurred at extreme glucose limitation. Escherichia coli turns to a protective stationary-phase response when nutrient levels fall below approximately 10(-7) M glucose, which is insufficient to saturate scavenger transporters regulated by cAMP plus endoinducers, and this response is optimally expressed at 10(-6) M glucose. The high-level induction of protective functions also explains the maintenance energy requirement of bacterial growth at low dilution rates.     

Variation in the methods leads to variation in the interpretation of biodiversity–ecosystem multifunctionality relationships

生物多样性常常和生态系统多功能性(生态系统同时提供多个生态系统功能的能力)正相关。然而,生物多样性与生态系统多功能性的关系是否依赖于生态系统功能的数目有诸多争议。其中,生物多样性对生态系统多功能性的影响或许不随生态系统功能数目的变化而变化,或者随生态系统功能数目的增多而增强。我们期望通过研究不同生态系统多功能性指数的统计原理来解决这些争议。 我们使用了模型模拟和一系列来自不同空间尺度(从局域到全球)和不同生物群系(温带和高寒草地、森林和干旱地)的经验数据。我们回顾了量化生态系统多功能性的三种方法,包括平均值法、加和法和阈值法。我们发现随着生态系统功能数目的增加,生物多样性与生态系统多功能性的关系要么不变,要么增强。这些结果可由平均和加和的多功能性指数的统计原理来解释。具体来讲,当利用生态系统功能的平均值计算多功能性指数时,由于多样性对多功能性的效应等于多样性对单个生态系统功能效应的平均值,所以不会随生态系统功能数目的变化而变化。同样的道理,当利用单个生态系统的加和值计算多功能性指数时,多样性的效应会随着生态系统功能数目的增加而增强。我们提出了一个改进的多功能性指数,将平均或加和多功能性指数转化为标准化的多功能性指数, 以便于对不同研究的结果进行比较。此外,我们提出了基于变量数值范围的标准化方法来解决阈值法的数学假象问题(多样性效应随生态系统功能数目的增加而增强)。我们的研究结果表明,量化多功能性指数的方法不同,结果也不同。因此,有必要加深对不同方法数理基础的理解。而标准化的多功能性指数为比较不同研究中的生物多样性与生态系统多功能性的关系提供了有效的方法。     

Isotopic evidence of environmental changes during the Devonian–Carboniferous transition in South China and its implications for the biotic crisis

The Devonian–Carboniferous (D–C) transition coincides with the Hangenberg Crisis, carbon isotope anomalies, and the enhanced preservation of organic matter associated with marine redox fluctuations. The proposed driving factors for the biotic extinction include variations in the eustatic sea level, paleoclimate fluctuation, climatic conditions, redox conditions, and the configuration of ocean basins. To investigate this phenomenon and obtain information on the paleo-ocean environment of different depositional facies, we studied a shallow-water carbonate section developed in the periplatform slope facies on the southern margin of South China, which includes a well-preserved succession spanning the D–C boundary. The integrated chemostratigraphic trends reveal distinct excursions in the isotopic compositions of bulk nitrogen, carbonate carbon, organic carbon, and total sulfur. A distinct negative δ¹⁵N excursion (~−3.1‰) is recorded throughout the Middle Si. praesulcata Zone and the Upper Si. praesulcata Zone, when the Hangenberg mass extinction occurred. We attribute the nitrogen cycle anomaly to enhanced microbial nitrogen fixation, which was likely a consequence of intensified seawater anoxia associated with increased denitrification, as well as upwelling of anoxic ammonium-bearing waters. Negative excursions in the δ¹³C_carb and δ¹³C_org values were identified in the Middle Si. praesulcata Zone and likely resulted from intense deep ocean upwelling that amplified nutrient fluxes and delivered ¹³C-depleted anoxic water masses. Decreased δ³⁴S values during the Middle Si. praesulcata Zone suggests an increasing contribution of water-column sulfate reduction under euxinic conditions. Contributions of organic matter produced by anaerobic metabolisms to the deposition of shallow carbonate in the Upper Si. praesulcata Zone is recorded by the nadir of δ¹³C_org values associated with maximal △¹³C. The integrated δ¹⁵N-δ¹³C-δ³⁴S data suggest that significant ocean-redox variation was recorded in South China during the D–C transition; and that this prominent fluctuation was likely associated with intense upwelling of deep anoxic waters. The temporal synchrony between the development of euxinia/anoxia and the Hangenberg Event indicates that the redox oscillation was a key factor triggering manifestations of the biodiversity crisis.     

Species–soil associations, disturbance, and nutrient cycling in an Australian tropical rainforest

Resource availability and disturbance are important factors that shape the composition, structure, and functioning of ecosystems. We investigated the effects of soil fertility and disturbance on plant–soil interactions and nutrient cycling in a diverse tropical rainforest. Our goal was to determine how common soil specialisation is among species and how plant–soil interactions affect ecosystem functioning in the presence of disturbance. Most species (59%) showed significant fidelity to either fertile (basalt) or infertile (schist) soils. Obligate schist specialists (six species) contributed 39 and 37% to total stand-level basal area and aboveground net primary productivity, respectively. High nutrient use efficiency of schist specialists reduced the rates of within-stand nutrient cycling through the production of nutrient-poor plant tissues and litter. Although forests on schist soils had higher basal area and similar rates of productivity to forests on basalt, uptake of Mg, K, P, and N were markedly less on schist than on basalt, particularly after a cyclone disturbance. Stands on schist soils were also less affected by the cyclone and, as a result, contributed less (ca. 50%) Mg, K, P, and N inputs to the forest floor (via litterfall) than stands on basalt soils. System “openness” (i.e. the risk of nutrient loss) from cyclone-affected basalt forests was minimised by high rates of uptake following disturbance and large effective cation exchange capacities of soils. Soil–plant-disturbance interactions are likely to engender different fitness-enhancing strategies on fertile and infertile soils, possibly leading to the development and/or maintenance of diversity in rainforests.     

The forest-cerrado transition zone in southern Amazonia: Results of the 1985 Projeto Flora Amazônica expedition to Mato Grosso

An account of the history of collecting in the Mato Grosso is followed by a discussion of the current views on the nature of the vegetation along the transition from Amazonian forest to cerrado. The purpose of the 1985 Projeto Flora Amazônica expedition was to sample the vegetation in the transition region in northern Mato Grosso. In order to characterize the vegetation at the various localities, the identified collections were assigned to one of five broad distributional categories: Planaltine, Transitional, Amazonian, Wide-spread, or Other. In most cases, as expected, the collecting sites in the north and the west were characterized by Amazonian forest species while those in the south and east comprised mainly cerrado elements. Our collections show that the transition zone is a complex mosaic of Amazonian forest and cerrado formations.     

Epithelial–mesenchymal transition in the formation of hypertrophic scars and keloids

Abnormal wound healing is likely to induce the formation of hypertrophic scars and keloids, which leads to dysfunction, deformity, and mental problem in the patients. Despite the advances in prevention and management of hypertrophic scar and keloids, the mechanism underlying scar and keloid formation has not been fully elucidated. Recent insights into the role of the epithelial–mesenchymal transition (EMT) in development, wound healing, stem cell regulation, fibrosis, and tumorigenesis have increased our understanding of the pathophysiology of hypertrophic scarring and keloids and suggested new therapeutic targets. This review summarizes recent progress in the elucidation of the role of EMT in physiologic wound healing and pathologic scar formation. This knowledge will facilitate an understanding of EMT roles in scar formation and shed new light on the modulation and potential treatment of hypertrophic scars and keloids.     

Discovery of charophyte flora across the Cretaceous–Paleocene transition in the Jiaolai Basin

Charophyte assemblages from the Cretaceous/Paleogene (K/Pg) boundary transition in the JZK-2 borehole of the Jiaolai Basin (eastern China) were studied. The charophyte flora includes Tolypella grambastii, Peckichara praecursoria, Microchara cristata, Microchara prolixa, Chara changzhouensis, Lamprothamnium ellipticum, Nodosochara (Turbochara) specialis, Lychnothamnus aff. vectensis, and Lychnothamnus lanpingensis n. comb. The discovery of the ostracod species Porpocypris sphaeroidalis Guan in the upper section of the JZK-2 borehole strongly indicates the arrival of the Paleocene. Three floras of the latest Cretaceous to the early Paleocene were compared among the Jiaolai, Pingyi, and Songliao basins. The Pingyi Basin is special because it is the only carbonate palaeolake that occurred throughout the K/Pg transition in China. It is characterized by the appearance of the Cretaceous brackish water element, Feistiella anluensis (Wang), and is dominated by the Paleocene species, Peckichara varians Grambast. The Songliao and Jiaolai floras grow in clastic lakes; the Jiaolai Basin is thought to correspond to an altitude lake, which was formed in the coastal mountains with high palaeoelevation (≥ 2.0 km), while the Songliao Basin is presumed to have been formed in a low elevation site according to previous studies. This difference in altitude explains why the Songliao Basin is more species-rich than the Jiaolai Basin.     

Expanding horizons in iron chelation and the treatment of cancer: Role of iron in the regulation of ER stress and the epithelial–mesenchymal transition

Cancer is a major public health issue and, despite recent advances, effective clinical management remains elusive due to intra-tumoural heterogeneity and therapeutic resistance. Iron is a trace element integral to a multitude of metabolic processes, including DNA synthesis and energy transduction. Due to their generally heightened proliferative potential, cancer cells have a greater metabolic demand for iron than normal cells. As such, iron metabolism represents an important “Achilles' heel” for cancer that can be targeted by ligands that bind and sequester intracellular iron. Indeed, novel thiosemicarbazone chelators that act by a “double punch” mechanism to both bind intracellular iron and promote redox cycling reactions demonstrate marked potency and selectivity in vitro and in vivo against a range of tumours. The general mechanisms by which iron chelators selectively target tumour cells through the sequestration of intracellular iron fall into the following categories: (1) inhibition of cellular iron uptake/promotion of iron mobilisation; (2) inhibition of ribonucleotide reductase, the rate-limiting, iron-containing enzyme for DNA synthesis; (3) induction of cell cycle arrest; (4) promotion of localised and cytotoxic reactive oxygen species production by copper and iron complexes of thiosemicarbazones (e.g., Triapine^® and Dp44mT); and (5) induction of metastasis and tumour suppressors (e.g., NDRG1 and p53, respectively). Emerging evidence indicates that chelators can further undermine the cancer phenotype via inhibiting the epithelial–mesenchymal transition that is critical for metastasis and by modulating ER stress. This review explores the “expanding horizons” for iron chelators in selectively targeting cancer cells.     

Dual-immunohistochemistry provides little evidence for epithelial–mesenchymal transition in pulmonary fibrosis

epithelial–mesenchymal transition (EMT) has been considered to be involved in organ fibrogenesis. However, there is few direct evidence of this process in the pathophysiology of pulmonary fibrosis in vivo. Therefore, we tried to verify the involvement of this process in the development of pulmonary fibrosis. Since the co-expressions of epithelial and mesenchymal markers are thought to be a marker of EMT, we performed dual-immuunohistochemistry to assess the co-expressions of these proteins in lung tissues from bleomycin-induced pulmonary fibrosis in mice, and from patients with idiopathic pulmonary fibrosis, and nonspecific interstitial pneumonia. Double positive cells for epithelial markers including E-cadherin, T1α, or aquaporin 5, and a mesenchymal markers α-smooth muscle actin or vimentin were not found in bleomycin-induced pulmonary fibrosis in mice. Double positive cells for E-cadherin, ICAM-1, LEA, CD44v9, or SP-A and α-smooth muscle actin or vimentin were not found in lung tissues from normal lung parenchyma, idiopathic pulmonary fibrosis and nonspecific interstitial pneumonia. These results offer at least two possibilities. One is that EMT does not occur in IPF or bleomycin-induced pulmonary fibrosis in mice. Another is that EMT may occur in pulmonary fibrosis but the time during this transition in which cells express detectable levels of epithelial and mesenchymal markers is too small to be detected by double immunohistochemistry.     

Residents’ valuation of ecosystem services in a Mediterranean coastal dune ecosystem: The case of the Ritoque dunes in central Chile

Coastal dunes provide a variety of cultural and ecological ecosystem services to local communities. However, most of these ecosystems are globally threatened by anthropic factors. Chile is home to important dune ecosystems such as the emblematic Ritoque coastal dunes located in the hotspot for biodiversity conservation in central Chile where there is a delicate relationship between conservation and human development interests, among local communities and authorities. Here, we performed a choice experiment study to determined willingness to implement conservation measures in the Ritoque dunes. In particular, we assessed residents’ preferences for improvements of the current state of local ecosystem services such as scenic beauty, biodiversity and archaeological sites. Residents showed preferences for improvements in Ritoque coastal dunes’ ecosystem services, and a high willingness to pay for protecting biodiversity and archeological sites, rather than for recreational infrastructure. Our study highlights the importance of place-based research that specifically addresses residents and stakeholders’ conservation priorities, which could be used to design and implement effective conservation management strategies for coastal ecosystems and coastal cities near them.