Phylogeography of the Chionodraco genus (Perciformes, Channichthydae) in the Southern Ocean

Antarctic fish of the suborder Notothenioidei represent one of the most notable examples of adaptive radiation in the marine environment. The evolutionary relationships between and within the eight families of this suborder have been well established by numerous studies, whereas the microevolutionary processes of notothenioid species remain largely unexplored. In the present paper we investigated the evolutionary relationships between three closely related species of the genus Chionodraco (family Channichthyidae), namely Chionodraco hamatus, Chionodraco rastrospinosus, and Chionodraco myersi by analysing portions of the mitochondrial genome (D-loop and 16S rRNA). The taxonomic status of C. hamatus and C. rastrospinosus as separate species has been questioned because of the limited number of key morphological characters that distinguish these two taxa. Our results, based on the analysis of several specimens belonging to both morphological groups revealed a small genetic differentiation among haplotypes, however, a clear separation between the two nominal species emerged since all individuals of each of the two taxa clustered together in distinct monophyletic groups. C. myersi appeared more distantly related in the phylogenetic analysis. For one species, C. hamatus, sampling was carried out at three different geographic locations in the area of the Ross Sea and Weddell Sea. The results showed that the partition of the genetic variation within this species is not compatible with the hypothesis of panmixia as gene flow between populations was significantly reduced.     

Satellite DNAs,Heterochromatin and sex chromosomes in Chionodraco hamatus (Channichthyidae,Perciformes)

We studied the genome of an antarctic ice fish, Chionodraco hamatus, in order to detect highly repetitive DNAs that may play a role in heterochromatinization processes and sex chromosome differentiation. We used two different experimental approaches. Hybridization of a Bkm probe to genomic DNA showed slight differences between the two sexes. Using restriction enzymes, a Bgl II satellite (pIF) was isolated. In situ hybridization revealed a preferential localization of pIF on the centromeres and the telomeres of most chromosomes, as well as an interstitial band on the long arms of the neo-Y sex chromosome, where probably the hypothetical fusion took place. Dot-blot experiments showed that pIF is still present in species belonging to different families of the same suborder. Though preliminary, our results suggest a conservative nature of this DNA which might have played a definite functional role in the genome of these polar fishes.     

Phylogeography of the genus Epiplatys (Aplocheiloidea: Cyprinodontiformes)

There are six major genera of aplocheiloid killifishes endemic to West Africa. Five of these are largely restricted to the two major blocks of rainforest. Two are found within the Eastern rainforest block (Nigeria to the central Congo) while three are found within the Western rainforest block (Sierra Leone to Togo). The sixth genus (Epiplatys) has a range that exceeds that of the combined area of the other five genera. Phylogenetically this genus is related to the Western rainforest taxa. Phylogeographic analysis of this genus suggests that it escaped the confines of the Western block by first expanding into lowland habitats exposed after a sea level drop and then dispersed along coastal habitats to the east. One lineage managed to penetrate the interior of the Eastern rainforest block and one derivative of this lineage penetrated the Congo basin. A second route out of the Western rainforest block was to the north through what is now savannah habitat. The greater phylogeographic range of Epiplatys is hypothesized to be due to retention of ancestral morphology related to a greater adaptability compared to the other five genera.     

A new genus and two new species of gobiid fishes (Perciformes) from the Chagos Archipelago,Central Indian Ocean

Synopsis A recent (1979) expedition to the Chagos Archipelago resulted in the collection of about 40 new taxa of fishes. A new genus,Trimmatom, and two new species,T. nanus andT. offucius, are described here. The new genus is characterized by having all pelvic-fin rays simple (unbranched), a scaleless body, no head pores, a wide gill opening extending anteroventrally to below the eye, and hypurals 1 and 2 fused to the complex formed by the fusion of the ural centrum and hypurals 3 and 4.T. nanuss andT. offucius are differentiated on the basis of fin ray counts and colour pattern.T. nanus is the smallest vertebrate yet to be described. Mature females with ovaries full of eggs are 8–10 mm in standard length.     

Macroscopic and histological analyses of gonads during the spawning season of Chionodraco hamatus (Pisces,Channichthyidae) off Terra Nova Bay,Ross Sea,Southern Ocean

A macroscopic and histological analysis of gonads was carried out during the spawning season of the high-Antarctic channichthyid Chionodraco hamatus in the western Ross Sea. Samples were collected between December and February during several years in the coastal waters of Terra Nova Bay. Gonad maturity stages were described for males and females according to macroscopic and histological scales. Using multi-year data, the estimated length at first spawning of females was about 35 cm TL, very similar to that obtained indirectly for males. Similar to many other high-Antarctic fish, C. hamatus is a summer spawner. The greater part of the stock was indeed in spawning condition between December and February, although a large proportion of females large enough to spawn probably did not spawn in that season. The present data confirm that C. hamatus, as is typical for Antarctic fish, probably spawns a single batch of oocytes once a year. In addition, vitellogenesis is a slow process that extends over at least 1 year. Discrepancies between the macroscopic and histological appearance of gonads were found. These were associated mainly with spent and resting females (maturity stages 5 and 2, respectively). This study demonstrates the importance of histological analysis of gonads in order to confirm the results of the macroscopic analyses routinely carried out in studies of reproductive biology. This is of particular importance in determining size at maturity and spawning stock biomass, for assessment purposes.     

Molecular phylogeny of the antitropical genus Pseudolabrus (Perciformes: Labridae): evidence for a Southern Hemisphere origin

The genus Pseudolabrus comprises 11 species of marine nearshore fishes which are antitropically distributed: two species occur in East Asia, the remaining nine species being distributed in the Southern Hemisphere, mainly in the temperate Pacific. The distributions of their closely allied genera, collectively called "pseudolabrines" are, however, restricted to the Australia-New Zealand region. The molecular phylogeny of six of the 11 Pseudolabrus species from both Hemispheres and four of the five other pseudolabrine genera was reconstructed from nucleotide sequence data from mitochondrial DNA 12S rRNA, tRNAVal, and 16S rRNA genes. Both parsimony and Bayesian analyses were performed. Results are not consistent with a previous phylogenetic hypothesis based on osteological data, particularly in the relationship between Pseudolabrus and Notolabrus, indicating a probable need for reviewing the status of Notolabrus (or the delimitations of both Pseudolabrus and Notolabrus). The two Northern Hemisphere species of Pseudolabrus were monophyletic and nested deep into the clade of the Southern Hemisphere pseudolabrines, which indicates that both pseudolabrines and Pseudolabrus originated in the Southern Hemisphere. A dispersal rather than vicariance explanation for the antitropical distribution of Pseudolabrus is more parsimonious given the number of dispersal events, extinctions, and evolutionary adaptations required under the phylogeny. Based on molecular clock calibrations, the transequatorial divergence was suggested to be early to mid Pliocene at the earliest.     

Description of two new genera, Santelmoa and Bentartia and two new species of Zoarcidae (Teleostei, Perciformes) from the Southern Ocean

Two new genera of lycodine zoarcid fish, Santelmoa and Bentartia, and two new species, Santelmoa carmenae and Bentartia cinerea, are described from 13 specimens collected from the Gerlache Strait, Southern Ocean, at 1,056-m depth. Santelmoa can be distinguished from all other lycodine genera by the combination of the following characters: anterior portion of frontals fused; scapular foramen open; ceratohyal–epihyal articulation interdigitating; cranium narrowed; supratemporal commissure and occipital pores absent; intercalar reaching the prootic; parasphenoid wing well developed; palatal arch well developed; posterior hyomandibular ramus short; post-temporal ventral ramus well developed; six branchiostegal rays; vertebrae asymmetrical; pelvic fin rays ensheathed; scales, lateral line, pyloric caeca, palatine and vomerine teeth present. Bentartia differs from the remaining lycodine genera by the following combination of characters: basioccipital and exoccipitals fused; supraoccipital–exoccipital articulation broadly contacting; ceratohyal–epihyal articulation interdigitating; post-temporal ventral ramus weak; two posterior nasal pores; cranium narrowed; supratemporal commissure and occipital pores absent; intercalar set posteriorly; palatal arch well developed; posterior hyomandibular ramus not elongate; parasphenoid wing high; six branchiostegal rays; vertebrae asymmetrical; pelvic fin rays ensheathed; scales, lateral line, pyloric caeca, palatine and vomerine teeth present. The relationships of the two new genera are discussed.     

Origin, diversification, and historical biogeography of the genus Trachurus (Perciformes: Carangidae)

We addressed phylogenetic relationships in the genus Trachurus using cytochrome b gene and D-loop sequences. The trees showed five groups: (1) the Southwest Pacific species (T. japonicus, T. novaezelandiae, and T. declivis); (2) The Mediterranean Sea and Eastern Atlantic species (T. mediterraneus); (3) The Atlantic Ocean species (T. lathami and T. trecae); (4) Eastern Atlantic species (T. trachurus and T. capensis); and (5) a group of highly mobile pelagic species, two from the Eastern Pacific (T. symmetricus and T. murphyi) and one from the Eastern Atlantic (T. picturatus). The phylogeny based on Cyt b, supports the molecular clock hypothesis and our results agree with the reported fossil indicating that the origin of this genus occur when the Thetys Sea closed (around 18.4 MYA). In addition, a very slow neutral substitution rate is reported identified only two periods of maximum diversification: the first occurring between 18.4 and 15.0 MYA and the second between 8.4 MYA and present day.     

The Influence of Pleistocene Climatic Changes and Ocean Currents on the Phylogeography of the Southern African Barnacle,Tetraclita serrata (Thoracica; Cirripedia)

The evolutionary effects of glacial periods are poorly understood for Southern Hemisphere marine intertidal species, particularly obligatory sessile organisms. We examined this by assessing the phylogeographic patterns of the southern African volcano barnacle, Tetraclita serrata, a dominant species on rocky intertidal shores. Restricted gene flow in some geographical areas was hypothesized based on oceanic circulation patterns and known biogeographic regions. Barnacle population genetic structure was investigated using the mitochondrial cytochrome oxidase subunit 1 (COI) region for 410 individuals sampled from 20 localities spanning the South African coast. The mtDNA data were augmented by generating nuclear internal transcribed spacer 1 (ITS1) sequences from a subset of samples. Phylogenetic and population genetic analyses of mitochondrial DNA data reveal two distinct clades with mostly sympatric distributions, whereas nuclear analyses reveal only a single lineage. Shallow, but significant structure (0.0041–0.0065, P<0.01) was detected for the mtDNA data set, with the south-west African region identified as harbouring the highest levels of genetic diversity. Gene flow analyses on the mtDNA data show that individuals sampled in south-western localities experience gene flow primarily in the direction of the Benguela Current, while south and eastern localities experience bi-directional gene flow, suggesting an influence of both the inshore currents and the offshore Agulhas Current in the larval distribution of T. serrata. The mtDNA haplotype network, Bayesian Skyline Plots, mismatch distributions and time since expansion indicate that T. serrata population numbers were not severely affected by the Last Glacial Maximum (LGM), unlike other southern African marine species. The processes resulting in the two morphologically cryptic mtDNA lineages may be the result of a recent historical allopatric event followed by secondary contact or could reflect selective pressures due to differing environmental conditions.     

Fauna of deepsea herring (Perciformes: Bathyclupeidae) of the Indian Ocean

The fauna of deepsea herring of the Indian Ocean was revised, and three species were identified: B. elongata Trunov, 1975, B. hoskynii Alcock, 1891, and B. malayana Weber, 1913. Of these, B. elongata and B. malayana were reliably described in this water area for the first time. The revision of materials that were mentioned earlier in the open nomenclature revealed no new species among them. The geographic and bathymetric distribution of these species was significantly refined. An identification key to the species of the Indo-West Pacific is given. It is shown that the species of this family, which is considered monotypic, are clearly divided into two groups, and their status is clarified.     

A new sand whiting, Sillago (Sillago) caudicula, from Oman, the Indian Ocean (Perciformes: Sillaginidae)

A new species of sand whiting, Sillago (Sillago) caudicula, is described based on four specimens collected from Oman, the Indian Ocean. It is easily distinguishable from its four known members of the subgenus Sillago by having a smaller head (29.0–30.1% in standard length), 23–24 soft anal fin rays, 35–36 total vertebrae, body depth at the origin of the second dorsal fin slightly deeper than that at the origin of the first dorsal fin, first and second hypurals fused (in adult) or narrowly separated (in young), third and fourth hypurals fused, and 11 dusky midlateral spots on the body.     

A new species of the cardinalfish genus Gymnapogon (Perciformes, Apogonidae) from the Red Sea

 A new cardinalfish species, Gymnapogon melanogaster, is described from two specimens collected at night in the Gulf of Aqaba, Eilat, Israel. This species is characterized by having 9 dorsal and 8 anal fin soft rays; 14–15 pectoral fin rays; 2 + 11 gill rakers; a flat, bifurcated preopercular spine; a naked body without a papillae network; black pelvic fins; and a black stomach. It is similar to Gymnapogon vanderbilti (Fowler, 1938) that is known only from the Line Islands of the Central Pacific Ocean. Received: December 26, 2001 / Revised: June 10, 2002 / Accepted: June 24, 2002 Acknowledgments We thank D. Didier and M. Sabaj of the Academy of Natural Sciences, Philadelphia, for loans of and for taking data from type specimens; T.H. Fraser of the Mote Marine Laboratory, Sarasota, kindly provided data on type specimens. We are grateful to E. Heemstra of the South African Institute for Aquatic Biodiversity, Grahamstown, South Africa, for the artwork presented in this article and to A. Lerner of the Hebrew University, Jerusalem, for his assistance in collecting the specimens. Correspondence to:Ofer Gon     

Phylogeography of loaches of the genus lefua (balitoridae, cypriniformes) inferred from mitochondrial DNA sequences

In order to elucidate phylogenetic relationships and intraspecific variations and to infer the evolutionary process of loaches of the genus Lefua, we analyzed nucleotide sequences of the mitochondrial D-loop region of 100 specimens obtained from 97 localities in Japan and Korea. The genus Lefua includes three described species, L. nikkonis, L. echigonia, and L. costata and an undescribed species, Lefua sp. Our results showed that each species of Lefua formed a monophyletic group, indicating clearly that Lefua species can be genetically distinguished from one another. Lefua nikkonis was the most closely related to L. costata, while L. sp. was the most closely related to L. echigonia. Specimens of L. sp. were grouped into two intraspecific populations and specimens of L. echigonia were grouped into six populations. These populations were well separated geographically from one another by mountain ranges and highlands. We estimated the evolutionary time for splitting of the species and intraspecific populations, and speculated on the evolutionary process of the genus Lefua. Species of Lefua are severely threatened. Fundamental genetic information is indispensable for conservation. We presented genetic background in order to protect these threatened loaches.     

Fishes of the family Pseudochromidae (Perciformes) in the northwest Indian Ocean and Red Sea

An account is given of pseudochromid fishes from the northwest Indian Ocean and Red Sea. Thirteen species are recorded; four new species of Pseudochromis and two new species of Chlidichthys (all from the Red Sea) are described. Keys are provided, and details are given of the ecology, maintenance in aquaria, and spawning of pseudochromids. As an appendix, a new name is proposed for Pseudochromis punctatus Kotthaus, 1970.     

Phylogeography of the Crown-of-Thorns Starfish in the Indian Ocean

Background

Understanding the limits and population dynamics of closely related sibling species in the marine realm is particularly relevant in organisms that require management. The crown-of-thorns starfish Acanthaster planci, recently shown to be a species complex of at least four closely related species, is a coral predator infamous for its outbreaks that have devastated reefs throughout much of its Indo-Pacific distribution.

Methodology/Principal Findings

In this first Indian Ocean-wide genetic study of a marine organism we investigated the genetic structure and inferred the paleohistory of the two Indian Ocean sister-species of Acanthaster planci using mitochondrial DNA sequence analyses. We suggest that the first of two main diversification events led to the formation of a Southern and Northern Indian Ocean sister-species in the late Pliocene-early Pleistocene. The second led to the formation of two internal clades within each species around the onset of the last interglacial. The subsequent demographic history of the two lineages strongly differed, the Southern Indian Ocean sister-species showing a signature of recent population expansion and hardly any regional structure, whereas the Northern Indian Ocean sister-species apparently maintained a constant size with highly differentiated regional groupings that were asymmetrically connected by gene flow.

Conclusions/Significance

Past and present surface circulation patterns in conjunction with ocean primary productivity were identified as the processes most likely to have shaped the genetic structure between and within the two Indian Ocean lineages. This knowledge will help to understand the biological or ecological differences of the two sibling species and therefore aid in developing strategies to manage population outbreaks of this coral predator in the Indian Ocean.     

A new species of the genus Malakichthys (Perciformes: Acropomatidae) from Japan

A new acropomatid, Malakichthys barbatus, is described on the basis of 27 specimens (76.3–180.1 mm SL) collected from Suruga Bay to Tosa Bay, along the southern Pacific coast of Japan. The new species is unique in having numerous pairs of spines on the chin (a pair of spines in other congeners). Although the new species resembles M. elegans in having a slender body (the depth less than 35% SL), the former is further distinguishable from the latter in having a slender first proximal radial of the anal fin with no hollow (broad with a cone-shaped hollow in M. elegans), 43–48 lateral line scales (48–51), modally 21 gill rakers on the lower arm (modally 23), and a dark blotch on the opercle (no remarkable blotch). Received: July 2, 2000 / Revised: September 27, 2000 / Accepted: January 30, 2001