Visual and acoustic surveys for North Atlantic right whales,Eubalaena glacialis,in Cape Cod Bay,Massachusetts, 2001–2005: Management implications

North Atlantic right whales, Eubalaena glacialis, remain endangered, primarily due to excessive anthropogenic mortality. Current management protocols in US waters are triggered by identifying the presence of at least one right whale in a management area. We assessed whether acoustic detection of right whale contact calls can work as an alternative to visual aerial surveys for establishing their presence. Aerial survey and acoustic monitoring were conducted in Cape Cod Bay, Massachusetts, in 2001–2005 and used to evaluate and compare right whale detections. Over the 58 d with simultaneous aerial and acoustic coverage, aerial surveys saw whales on approximately two-thirds of the days during which acoustic monitoring heard whales. There was no strong relationship between numbers of whales seen during aerial surveys and numbers of contact calls detected on survey days. Results indicate acoustic monitoring is a more reliable mechanism than aerial survey for detecting right whales. Because simple detection is sufficient to trigger current management protocols, continuous, autonomous acoustic monitoring provides information of immediate management utility more reliably than aerial surveillance. Aerial surveys are still required to provide data for estimating population parameters and for visually assessing the frequency and severity of injuries from shipping and fishing and detecting injured and entangled right whales.     

Pollen calendar for cracow (southern Poland), 1982–1991

Summary During 1982 – 1991 pollen deposition in the centre of Cracow (southern Poland) was investigated using the gravimetric method. 32 taxa of the 84 identified were taken into consideration, and nearly all of them can be allergenic. The beginning of mass pollen fall was observed in the second decade of March, and the third decade of September saw the completion of the yearly cycle of abundant appearance of pollen in the aeroplankton. Tree pollen dominates quantitatively.     

Eight years of internal phosphorus loading and changes in the sediment phosphorus profile of Lake Søbygaard,Denmark

During each of the first 8 years following an 80–90% reduction in external phosphorus loading of shallow, hypertrophic Lake Søbygaard, Denmark in 1982, phosphorus retention was found to be negative. Phosphorus release mainly occurred from April to October, net retention being close to zero during winter. Net internal phosphorus loading was 8 g P m^–2 y^–1 in 1983 and slowly decreased to 2 g P m^–2 y^–1 in 1990, mainly because of decreasing sediment phosphorus release during late summer and autumn. The high net release of phosphorus from Lake Søbygaard sediment is attributable to a very high phosphorus concentration and to a high transport rate in the sediment caused by bioturbation and gas ebullition. Sediment phosphorus concentration mainly decreased at a depth of 5 to 20 cm, involving sediment layers down to 23 cm. Maximum sediment phosphorus concentration, which was 11.3 mg P g^–1 dw at a depth of 14–16 cm in 1985, decreased to 8.6 mg P g^–1 dw at a depth of 16–18 cm in 1991. Phosphorus fractionation revealed that phosphorus release was accompanied by a decrease in NH₄Cl-P + NaOH-P and organic phosphorus fractions. HCl-P increased at all sediment depths. The Fe:P ratio in the superficial layer stabilized at approximately 10. Net phosphorus release can be expected to continue for another decade at the present release rate, before an Fe:P ratio of 10 will be reached in the sediment layers from which phosphorus is now being released.     

Gentamicin resistance among salmonellae. A ten-year study, 1973–1982

A total of 8579 Salmonella strains received during 1973–1982 were tested for their antibiogram patterns against nine routinely used antibiotics including gentamicin. Of these, 380 strains (4.4%) showed resistance to gentamicin at levels of 10 g/ml and above. A high degree of resistance to gentamicin was recorded in 1979 (18.7%) and 1980 (9.4%). M.I.C. levels of strains received during 1982 were determined and it was found that some strains had levels as high as 160 g/ml. The comparative results of gentamicin resistance from 1973 to 1982 are presented and the public health significance of the alarming increase in two years (1979–1980) is discussed.     

Local Knowledge,Subsistence Harvests,and Social–Ecological Complexity in James Bay

Ecosystems are complex and difficult to predict and control. Western science-based societies have tended to simplify ecosystems to manage them. Some indigenous and other rural groups who interact closely with a given resource system seem to have developed practices that are adapted to live with complexity. This paper examines how indigenous Cree hunters in James Bay, subarctic Canada, understand and deal with ecological complexity and dynamics, and how their understanding of uncertainty and variability shape subsistence activities. The focus is the Canada goose (Branta canadensis) hunt which is adaptive to shifts and changes in local and regional conditions. Ecological understandings of Cree hunters allow them to account for and deal with a very large number of variables at multiples scales. The Cree deal with these variables qualitatively, an approach consistent with some scientific ways of dealing with complexity, such as adaptive management and fuzzy logic.     

Use of artificial substrata by introduced and cryptogenic marine species in Paranaguá Bay,southern Brazil

Abstract

Ports are important locations for the introduction of marine species, while marinas and pontoons often serve as secondary habitats for these species. In a marina near Paranaguá Port, a major international port in southern Brazil, the encrusting community was studied to (i) identify possibly introduced species, and (ii) examine the use of artificial substrata by these species. Samples (20 × 20 cm) were taken from fibreglass floats (boardwalks and boat hulls) and concrete columns. A total of 85 species were found of which 50 were classified into three categories: four introduced, 33 cryptogenic and 13 native. The introduced species were the hydrozoan Garveia franciscana (on floats, boats and submerged concrete), the polychaete Polydora cornuta (more abundant on floats and submerged concrete) and the barnacles Amphibalanus reticulatus (equally abundant on the three substrata) and Striatobalanus amaryllis (only on floats and submerged concrete). Organisms were most abundant on floating boardwalks, while species richness and composition were similar to that on boat hulls (32 and 37, respectively), which are an important vector for intraregional transport. All substrata supported at least three of the four introduced, and many of the cryptogenic species. The proportion of introduced to the total number of species was greater than observed in other ports. This demonstrates that the introduction potential is great in Paranaguá Bay, especially considering that this study was restricted to one site and sampled only hard substrata. None of the introduced species has yet been identified as invasive, but all are generalists with respect to substratum, indicating their invasive potential. The ability to colonise stable concrete walls shows that they could also colonise the natural granite rocky substrata in the bay, and the ability to colonise floating surfaces indicate their capability of spreading in the region on the hulls of recreational boats.     

Use of artificial substrata by introduced and cryptogenic marine species in Paranaguá Bay, southern Brazil

Ports are important locations for the introduction of marine species, while marinas and pontoons often serve as secondary habitats for these species. In a marina near Paranaguá Port, a major international port in southern Brazil, the encrusting community was studied to (i) identify possibly introduced species, and (ii) examine the use of artificial substrata by these species. Samples (20 x 20 cm) were taken from fibreglass floats (boardwalks and boat hulls) and concrete columns. A total of 85 species were found of which 50 were classified into three categories: four introduced, 33 cryptogenic and 13 native. The introduced species were the hydrozoan Garveia franciscana (on floats, boats and submerged concrete), the polychaete Polydora cornuta (more abundant on floats and submerged concrete) and the barnacles Amphibalanus reticulatus (equally abundant on the three substrata) and Striatobalanus amaryllis (only on floats and submerged concrete). Organisms were most abundant on floating boardwalks, while species richness and composition were similar to that on boat hulls (32 and 37, respectively), which are an important vector for intraregional transport. All substrata supported at least three of the four introduced, and many of the cryptogenic species. The proportion of introduced to the total number of species was greater than observed in other ports. This demonstrates that the introduction potential is great in Paranaguá Bay, especially considering that this study was restricted to one site and sampled only hard substrata. None of the introduced species has yet been identified as invasive, but all are generalists with respect to substratum, indicating their invasive potential. The ability to colonise stable concrete walls shows that they could also colonise the natural granite rocky substrata in the bay, and the ability to colonise floating surfaces indicate their capability of spreading in the region on the hulls of recreational boats.     

Modeling nutrients,oxygen and critical phosphorus loading in a shallow reservoir in China with a coupled water quality – Macrophytes model

Many macrophyte-dominated clear lakes switch to a phytoplankton-dominated turbid state when the lake becomes eutrophic. An existing Yuqiao Reservoir Water Quality Model (YRWQM) and the macrophyte submodel were coupled to simulate the effect of submerged macrophytes on nutrients and dissolve oxygen cycles in a shallow reservoir in China. The level of phosphorus loading in a transition from a clear to turbid state was addressed using the integrated model. The model runs from seedling establishment until dying out, from March 1 to July 18 in 2009. The simulations were performed for a contingent range of P loadings, starting from three different initial conditions. The results indicated that the integrated model improves accuracy of predictions compared to YRWQM. The concentrations of nutrients declined slightly during the macrophyte growth period in the reservoir and dissolved oxygen increased slightly. Although nutrient concentrations increased by submerged macrophyte release during the extinction period, the effect on the nutrients was less than that of transfer with nutrient-rich water. More released nutrients may enhance increases in substantial abundance. The critical phosphorus loading level during a switch from the clear to turbid state was estimated by these scenarios. The threshold for the switch is ∼6.1 mgP m⁻² d⁻¹ with an initial total phosphorus concentration of 160 μg l⁻¹. Moreover, the results demonstrated that the switch was also dependent on the initial total phosphorus concentration. These results suggest that the reservoir in a clear water state is at risk of a switch as nutrient levels are close to the critical levels.     

Excessive nitrogen and phosphorus in European rivers: 2000–2050

Rivers export nutrients to coastal waters. Excess nutrient export may result in harmful algal blooms and hypoxia, affecting biodiversity, fisheries, and recreation. The purpose of this study is to quantify for European rivers (1) the extent to which N and P loads exceed levels that minimize the risk of harmful algal blooms and (2) the relative shares of sources of N and P in rivers. This may help to identify effective management strategies to reduce coastal eutrophication. We focus on 48 rivers in 27 countries of the European Union (EU27). We used the Global Nutrient Export from Watersheds (NEWS) model to analyze nutrient export by rivers and the associated potentials for coastal eutrophication as reflected by Indicator for Coastal Eutrophication Potential (ICEP). In 2000, 38 of the 48 EU rivers indicated in our study had an ICEP > 0, indicating a relatively high potential for harmful algal blooms. These 38 rivers cover 60% of EU27 land area. Between 2000 and 2050 nutrient export by European rivers is projected to decrease. However, by 2050 still 34 EU rivers, covering 48% of the land area, have an ICEP > 0. This indicates that in these scenarios little progress is made in terms of environmental improvement. About one-third of the rivers with ICEP > 0 are N limited, and about two-thirds P limited. In N-limited rivers reducing N loads is a more effective way to reduce the risk for coastal eutrophication than reducing P, and vice versa. For N-limited rivers agriculture or sewage are the dominant sources of nutrients in river water. In P-limited rivers, sewage is found to be the dominant source of P, except for rivers draining into the Atlantic Ocean, where agriculture can also be dominant. A basin-specific approach is needed to effectively reduce N and P loads.     

Physical–chemical principles underlying RTK activation,and their implications for human disease

RTKs, the second largest family of membrane receptors, exert control over cell proliferation, differentiation and migration. In recent years, our understanding of RTK structure and activation in health and disease has skyrocketed. Here we describe experimental approaches used to interrogate RTKs, and we review the quantitative biophysical frameworks and structural considerations that shape our understanding of RTK function. We discuss current knowledge about RTK interactions, focusing on the role of different domains in RTK homodimerization, and on the importance and challenges in RTK heterodimerization studies. We also review our understanding of pathogenic RTK mutations, and the underlying physical–chemical causes for the pathologies. This article is part of a Special Issue entitled: Protein Folding in Membranes.     

Phytoplankton periodicity in Ogelube Lake,Anambra State,Nigeria during 1979–1980

Ogelube is a tropical oligotrophic lake having a desmid dominated phytoplankton with maximum density during the warmest season. During the rainy season, the lake cools, phytoplankton declines and dominance shifts to algae other than desmids. The lake cools further as harmattan advances, while phytoplankton reaches its minimum, suggesting water temperature to be more important than other environmental conditions. Decrease in phytoplankton density with falling water temperature was probably due to slower reproduction, rather than to increased death rate.     

Longitudinal patterns of phosphorus and phosphorus binding in sediment of a lowland lake–river system

In the Warnow River and its tributaries in North Germany, measurements were made to characterise the longitudinal patterns of nutrients in the riverbed and lake sediments. The sediment composition was analysed based on dry weight, organic matter, mean grain size and concentration of carbon, nitrogen, phosphorus, iron, aluminium and sulfur. Sediment phosphate was investigated in more detail by means of a sequential chemical extration. The phosphate was differently bound to the sediment particles in the upstream region than in the impounded section of the Warnow River and ist tributaries. Accumulation of fine sediment with high P-concentrations was recorded in the lake sediments and in the impounded section of the river. These impounded sections were the most important P-pool in the whole catchment area and played an important role in P-retention in the river system. Organic matter concentration, P-accumulation and P-binding in the sediment of the impounded section is corresponding with those of lake sediments. During the summer, anoxic P-release from the sediment in the impounded section was measured and calculated. The reductant-soluble fraction of the P-fractionation underestimated the release under anoxic condition. Adsorbed phosphorus and organic phosphate play an important role in P-release in the impounded part of the river.     

Structure of APP-C991–99 and implications for role of extra-membrane domains in function and oligomerization

The 99 amino acid C-terminal fragment of Amyloid Precursor Protein APP-C99 (C99) is cleaved by γ-secretase to form Aβ peptide, which plays a critical role in the etiology of Alzheimer's Disease (AD). The structure of C99 consists of a single transmembrane domain flanked by intra and intercellular domains. While the structure of the transmembrane domain has been well characterized, little is known about the structure of the flanking domains and their role in C99 processing by γ-secretase. To gain insight into the structure of full-length C99, REMD simulations were performed for monomeric C99 in model membranes of varying thickness. We find equilibrium ensembles of C99 from simulation agree with experimentally-inferred residue insertion depths and protein backbone chemical shifts. In thin membranes, the transmembrane domain structure is correlated with extra-membrane structural states and the extra-membrane domain structural states become less correlated to each other. Mean and variance of the transmembrane and G₃₇G₃₈ hinge angles are found to increase with thinning membrane. The N-terminus of C99 forms β-strands that may seed aggregation of Aβ on the membrane surface, promoting amyloid formation. In thicker membranes the N-terminus forms α-helices that interact with the nicastrin domain of γ-secretase. The C-terminus of C99 becomes more α-helical as the membrane thickens, forming structures that may be suitable for binding by cytoplasmic proteins, while C-terminal residues essential to cytotoxic function become α-helical as the membrane thins. The heterogeneous but discrete extra-membrane domain states analyzed here open the path to new investigations of the role of C99 structure and membrane in amyloidogenesis. This article is part of a Special Issue entitled: Protein Aggregation and Misfolding at the Cell Membrane Interface edited by Ayyalusamy Ramamoorthy.     

Phytoplankton pigments designation–an application of RP-HPLC in qualitative and quantitative analysis

An account is given of the use of RP-HPLC (reverse-phase high performance liquid chromatography) analysis of high purity chlorophylls and carotenoids standards originating from reference phytoplankton monocultures. All important chromatography parameters were established: retention time, detection limit, spectrum, wavelength of maximum absorption, calibration curve, response factors. Data were also obtained for pigment mixtures in naturalphytoplankton populations in Spitsbergen and the Gulf of Gdask. The identity and purity of all pigments were confirmed by co-elution with standards, including canthaxanthin as an internal standard. The data presented enable the qualitative and quantitative analysis of naturally existing phytoplankton pigments at concentrations down to 0.1 g L^-1 to be carried out without the need for standards from commercial sources.     

Interracial status competition and southern lynching, 1882–1930

This article provides theoretical grounds and empirical evidence that different types of lynching in the post-Reconstruction South were driven by social processes at different levels of analysis. County-level analyses based upon new detailed data on lynchings in Georgia and Louisiana from 1882 to 1930 reveal that ‘private' lynchings, perpetrated by small groups outside the public purview without manifest ritual, were related to whites’ interracial status and social identity concerns on the interpersonal level, whereas ‘public' lynchings, involving larger mobs and ritualized violence, appear unaffected by such dynamics. These results validate relational and interactionist perspectives on violence, lend support to calls for disaggregation in the study of racial, ethnic, and nationalist violence, and shed light on the intertwining of racial identity formation with the generation of racial inequalities. They also carry implications for the study of contemporary ethno-racial hate crime.     

Spatial,Temporal and Genetic Dynamics Characteristics of Influenza B Viruses in China, 1973–2018

Annual influenza B virus epidemics and outbreaks cause severe influenza diseases in humans and pose a threat to public health. China is an important epidemic area of influenza B viruses. However, the spatial, temporal transmission pathways and the demography history of influenza B viruses in China remain unknown. We collected the haemagglutinin gene sequences sampled of influenza B virus in China between 1973 and 2018. A Bayesian Markov chain Monte Carlo phylogeographic discrete approach was used to infer the spatial and temporal phylodynamics of influenza B virus. The Bayesian phylogeographic analysis of influenza B viruses showed that the North subtropical and South subtropical zones are the origins of the Victoria and Yamagata lineage viruses, respectively. Furthermore, the South temperate and North subtropical zones acted as transition nodes in the Victoria lineage virus dispersion network and that the North subtropical and Mid subtropical zones acted as transition nodes in the Yamagata lineage virus dispersion network. Our findings contribute to the knowledge regarding the spatial and temporal patterns of influenza B virus outbreaks in China.     

The dynamics of grape leafhopper Empoasca vitis Göthe populations in southern Switzerland and the implications for habitat management

The life cycle of Empoasca vitis and its most important parasitoid Anagrus atomus in southern Switzerland can be divided into three phases. In phase I the adults of E. vitis move from overwintering sites, i.e. primarily conifers, over deciduous plants into the vineyards. The parasitoid A. atomus on the other hand, appears to overwinter in leafhopper eggs, mainly on roses and blackberries. It subsequently completes one generation in leafhopper eggs primarily on blackberries and hazelnuts, before it attacks E. vitis eggs in the vineyards. For phase II, a population model with time‐varying age structures and stochastic properties was constructed for E. vitis. For this purpose a time‐varying distributed delay model with attrition was constructed. Given the calibrated initial density of overwintering females, the model predicts an unacceptable number of E. vitis for the growing season. However, if egg parasitism of A. atomus and Stethynium triclavatum is introduced into the model as an external variable E. vitis densities are predicted which are economically irrelevant. Inphase III E. vitis adults leave the vineyards for the overwintering sites. The model shows the importance of the parasitoid A. atomus during phase II. A. atomus should be favoured by surrounding the vineyards with host plants carrying leafhoppers’ eggs. Consequently, habitat management measures for E. vitis control could be applied to the surroundings of the vineyards.     

A functional extracellular transcriptome in animals? implications for biology,disease and medicine

Muneesh Tewari shares his views on possible functions and applications of RNA transport by extracellular vesicles in animals.