Restoration Strategies for Coral Reefs Damaged by Recreational Activities: The Use of Sexual and Asexual Recruits

The unique marine ecosystems of coral reefs express varying levels of degradation as a result of increasing anthropogenic pressures. This is the main reason why more than 200 coral reef localities were proclaimed as natural reserves or marine parks under varying legislation, rules, and monitoring and management programs. Ironically, the conventional management plans increased accessibility to many reef localities and enhanced dramatically the impact of tourism on reef habitats. Recreational activities including SCUBA and skin diving, fishing, human trampling, sediment re-suspension, and other damage caused by “innocent” visitors are causing a rapid deterioration of many reefs. Their destruction requires years and decades for full recovery. I propose to rehabilitate such damaged habitats by the alternate strategy of “gardening coral reefs” with asexual and sexual recruits. Coral branches, colony fragments, and whole small colonies (asexual recruits) and laboratory or in situ settled planula-larvae (sexual recruits) are designed to be transplanted into denuded reefs for restoration. This approach is further improved when the sexual and asexual recruits are maricultured in situ within special protected areas, before being transplanted. The use of sexual recruits ensures an increase in genetic diversity. I discuss several methodologies and results already accumulated showing the applicability of this gardening strategy for rehabilitation of denuded coral reefs. This restoration strategy should be integrated with proper management similar to that of already established reforestation in terrestrial habitats. The best candidates for employing this strategy are the fast-growing coral species, usually branching forms and species that brood their planulae larvae.     

Threatened Corals Provide Underexplored Microbial Habitats

Contemporary in-depth sequencing of environmental samples has provided novel insights into microbial community structures, revealing that their diversity had been previously underestimated. Communities in marine environments are commonly composed of a few dominant taxa and a high number of taxonomically diverse, low-abundance organisms. However, studying the roles and genomic information of these “rare” organisms remains challenging, because little is known about their ecological niches and the environmental conditions to which they respond. Given the current threat to coral reef ecosystems, we investigated the potential of corals to provide highly specialized habitats for bacterial taxa including those that are rarely detected or absent in surrounding reef waters. The analysis of more than 350,000 small subunit ribosomal RNA (16S rRNA) sequence tags and almost 2,000 nearly full-length 16S rRNA gene sequences revealed that rare seawater biosphere members are highly abundant or even dominant in diverse Caribbean corals. Closely related corals (in the same genus/family) harbored similar bacterial communities. At higher taxonomic levels, however, the similarities of these communities did not correlate with the phylogenetic relationships among corals, opening novel questions about the evolutionary stability of coral-microbial associations. Large proportions of OTUs (28.7–49.1%) were unique to the coral species of origin. Analysis of the most dominant ribotypes suggests that many uncovered bacterial taxa exist in coral habitats and await future exploration. Our results indicate that coral species, and by extension other animal hosts, act as specialized habitats of otherwise rare microbes in marine ecosystems. Here, deep sequencing provided insights into coral microbiota at an unparalleled resolution and revealed that corals harbor many bacterial taxa previously not known. Given that two of the coral species investigated are listed as threatened under the U.S. Endangered Species Act, our results add an important microbial diversity-based perspective to the significance of conserving coral reefs.     

Notes on primary productivity of coastal waters in the Gulf of Elat (Red Sea)

The following parameters were measured during May 1976 along the coasts of the Gulf of Elat (or: Gulf of Aqaba): phytoplankton species composition, chlorophyll content and photosynthetic production; weight of suspended particles and nutrient concentration; chlorophyll content of the sediments. The study areas were coral reefs of the northern part of the Gulf and a mangrove pool south of it. Phytoplankton characteristics and nutrient levels are those of oligotrophic waters. However, the sediments harbour such an abundant plant biomass that in coastal waters per m² surface area, there is several hundred times more chlorophyll in the sand than in the plankton. Reasons why both the mangrove and the coral reef may exhibit the same trends are discussed.     

Habitat related differences in lipid reserves of some exploited fish species in the north‐western Mediterranean continental shelf

At a large‐scale, the lipid content in the muscle of Pagellus acarne and Pagellus erythrinus was higher in the Gulf of Lions than in the Catalan Sea. Furthermore, there was a significant effect of depth on lipid content of Mullus barbatus, Mullus surmuletus and P. acarne , fishes with the highest lipid levels inhabiting the shallowest parts of the Gulf of Lions (all three species) and the Catalan Sea (last two species). At a small‐scale, the study revealed differences in the condition of Diplodus sargus sargus between protected (Natural Park of Cap de Creus) and the unprotected habitats. Total lipid content in the muscle of D. s. sargus during spawning was higher within the protected area than in adjacent unprotected rocky areas. Because lipids play a critical role in the health, growth and reproduction of fishes, results from this study support the relative importance of some habitats (shallow v . deeper parts of the continental shelf, the Gulf of Lions v . the Catalan Sea, and the protected bottom areas of the Natural Park of Cap de Creus v . the unprotected bottom areas) for the productivity of different Mediterranean fishes.     

The first baleen whale marine protected area proposed for Bryde's whales in the Beibu Gulf,China

The establishment of marine protected areas (MPAs) for cetaceans is an important strategy to mitigate human disturbance and protect biodiversity. Despite abundant cetacean species, there are only a few MPAs dedicated to cetacean conservation in China, all of which are for inshore dolphins. Bryde's whales, the only nearshore baleen whale population in mainland China, are conflicting with intensive human activities, yet an effective conservation strategy is lacking. This study used species distribution models to analyze distribution patterns and suitable habitats of Bryde's whales in the Beibu Gulf and proposes the first baleen whale MPA in China. Our results showed Bryde's whales have a seasonal distribution pattern in the Beibu Gulf, and that the waters around Weizhou Island and the southeastern coast of Vietnam were their core habitats. The seasonal nighttime light data indicated a negative relationship between the number of ship lights and Bryde's whale sightings and suggest that Bryde's whales might be threatened by fisheries. We proposed an MPA based on the results, suggesting that the waters within 20 km around Weizhou Island should be declared a protected area. Furthermore, we recommend that anthropogenic activities in the waters around Weizhou Island are better managed to reduce negative impacts on marine life.     

Bathymetric Variation in Recruitment and Relative Importance of Pre- and Post-Settlement Processes in Coral Assemblages at Lyudao (Green Island), Taiwan

Studies on coral communities have typically been conducted in shallow waters (∼5 m). However, in the face of climate change, and as shallow coral communities become degraded, a greater understanding of deeper coral communities is needed as they become the main reef remnants, playing a central role in the future of coral reefs. To understand the dynamics of deeper coral assemblages, the recruitment and taxonomic composition of different life-stages at 5 and 15 m depths were compared at three locations in Lyudao, southeastern Taiwan in 2010. Coral recruits (<1 cm diameter, <4 months old) were examined using settlement plates. Juvenile corals (1–5 cm, several years old) were examined with quadrats, and adult corals (>5 cm, several years to decades old) were examined using transect lines. Pocilloporid and poritid corals had similar and higher numbers of recruits at 5 m compared to 15 m, whereas acroporid recruits were more abundant at 15 m. The primary cause for the former may be larval behavior, such that they position themselves in shallow waters, while that for the latter may be the dominance of brooding acroporid species (Isopora spp.) at 15 m. The taxonomic composition, especially between recruits and juveniles/adults, was more similar at 15 m than at 5 m. These results suggest a change in the relative importance of pre- and post-settlement processes in assemblage determinants with depth; coral assemblages in shallow habitats (more disturbed) are more influenced by post-settlement processes (mortality events), while those in deeper habitats (more protected) are more influenced by pre-settlement processes (larval supply).     

Detection of gaps in the spatial coverage of coral reef monitoring projects in the US Caribbean and Gulf of Mexico

As part of the US Coral Reef Task Force's National Program to Map, Assess, Inventory, and Monitor US Coral Reef Ecosystems, a comprehensive survey of projects/programs monitoring coral reef ecosystems and related habitats (i.e., seagrass beds and mangroves) in the US Caribbean and Pacific was undertaken. Information was gathered on a total of 296 monitoring and assessment projects conducted since 1990 in the US Caribbean and the Gulf of Mexico. Substantial gaps in monitoring coverage of US coral reef ecosystems were revealed through geographic information system (GIS) analysis of survey metadata. Although southern Florida contains approximately two-thirds of all marine monitoring projects found in the US Caribbean and Gulf of Mexico, we were unable to identify any ongoing projects that monitor coral reefs along Florida's western coast and off of the Florida Middle Grounds. Additionally, Florida is covered by approximately 1 900 km2 of mangroves, yet there were only four ongoing projects that monitor this ecosystem, leaving gaps in coverage in the Lower and Middle Keys and along the eastern and western coasts. The Flower Garden Banks National Marine Sanctuary, located offshore of the Texas/Louisiana border, has an integral long-term monitoring program, but lacks a monitoring project that gathers long-term, quantitative data on reef lish abundance and certain water quality parameters. Numerous coral reef monitoring projects in Puerto Rico are concentrated on the island's southwestern coast surrounding La Parguera, while far fewer monitoring projects are conducted along the northern and southeastern coasts and around Vieques Island. In the US Virgin Islands, the paucity of monitoring projects in large areas of St. Croix and St. Thomas contrasts with monitoring activity in three marine protected areas (MPAs), where 66% of the US Virgin Islands' coral reef monitoring sites were found. Only a series of assessments have been conducted at Navassa, a small, uninhabited island located 55 km west of Haiti and 137 km northeast of Jamaica. In order to better understand changes in coral reef communities and to produce a series of biennial reports on the status of US coral reef ecosystems, the National Oceanic and Atmospheric Administration (NOAA) is developing a national coral reef monitoring network. This network has already begun to fill some of these gaps in monitoring coverage through issuing cooperative grants to states and territories to build long-term monitoring capacity.     

Coral and sandstone reef-habitats in north-western Sri Lanka: patterns in the distribution of coral communities

Coral and sandstone reefs cover a significant part ofSri Lanka‘s continental shelf and contain incomparison unique reef structures. Despite this, reefsin this region of the northern Indian Ocean havereceived little research attention. In an attempt tobetter understand these ecosystems and their innatecharacter, this study describes the variety of reeftypes and habitats that are found in this area. Thestudy concentrated on four major reef areas: the BarReef Marine Sanctuary (BRMS), Kandakuliya Reefs,Talawila Reef, and Mampuri Reef. These reefs showedapparent differences in habitat structure in terms ofthe proportion coral cover, coral species compositionand structural complexity. Two reef types were presentwithin the continental shelf of BRMS: coral andsandstone patch-reefs. Acropora was the mostdominant coral genera however in total 118madreporarian species and 50 coral genera wererecorded in the sanctuary. Distinct habitats wereidentified within reef types including shallow reefflat, shallow patch reef, deep reef flat and Porites dome habitats for the coral-reef patcheswhile the sandstone-reef patches were divided intostructured and flat sandstone reef habitats.Kandakuliya Reef south of BRMS was by large dominatedby coral rubble. Talawila Reef and Mampuri Reef showedunique structures with the former being dominated bymassive corals and the latter mainly containingsandstone structures. In addition to factors such asbio-erosion, sedimentation, hydrodynamics, andrecruitment or colonisation processes, some reefs wereclearly under significant direct human impact whichappeared to play a dominant role in habitatstructuring. However, type and degree of humandisturbance varied among the reefs. Habitat alterationat Kandakuliya Reef was the result of intense fishingusing destructive fishing methods. Talawila Reef andMampuri Reef was also influenced by fishing activitiesthough reef structure seemed less affected. This revised version was published online in July 2006 with corrections to the Cover Date.     

Coral reefs in the Southern Barents Sea: habitat description and the effects of bottom fishing

Fifteen Lophelia reefs from offshore to coastal areas off northern Norway were studied using video. Health status of the coral habitat (degree of physical impact, % cover of living tissue, colony size), occurrence of trawl marks and lost fishing gear, height of coral colonies and associated fauna were analysed from 44 video-lines. Fishing impact was more frequent on the offshore reefs (36.5% of the observed areas) than those in the coastal reefs (0.6%). The most visible effects of fishing were broken and displaced coral colonies. At some sites only small scattered fragments of live corals were observed, indicating recent impact. The mean colony height of Lophelia and gorgonian corals at impacted sites was around half the size of those at non-impacted sites. Both species richness and abundance was higher at non-impacted coral habitats compared to impacted. The actinarian Protanthea simplex and unidentified brittlestars were the only taxa with higher abundance on impacted compared with non-impacted habitats. The reefs at the offshore location were protected against bottom trawling in 2009 through the establishment of a marine protected area (MPA), but a general ban against trawling on known coral reefs had already been implemented in 1999. In the MPA, signs of regrowth were observed. Most of the observed damage probably occurred over 10 years earlier. Results show that live and non-impacted cold water coral reefs have an important ecological function by enhancing the local biodiversity and fish abundance. Preventing further damage to impacted reefs may lead to full recovery within a few decades.     

中国长臂虾总科的动物地理学特点

本文讨论了长臂虾总科在中国分布的3个科,即拟贝隐虾科、叶颚虾科和长臂虾科的属、种在中国的分布情况及区系特点。拟贝隐虾科和叶颚虾科种类较少,分布于热带海域,我国分别在南沙群岛和西沙群岛发现1属1种和3属3种,均为广布的常见种。长臂虾科是本总科中种类最多、分布最广、十分常见的科,包括2亚科102属,世界性分布,海洋、淡水均有,我国大量分布。其起源中心应在印度－西太平洋暖水区,一部分浅海沿岸种经河口进入淡水水域, 大量发展,很少种可分布至温带区边缘;另一部分在热带珊瑚礁环境大量发展,并与许多动物类群共栖或共生。长臂虾亚科基本上是浅海－淡水自由生活类群,我国已记录9属61种,主要分布于南部,多数为东洋界热带和亚热带种,分别属东洋界(淡水)和印度－西太平洋区(海水、半咸水);而极少数种分布至北方,温带性的淡水种有2种白虾,1种小长臂虾和仅见于东北部的条纹长臂虾,属于古北界区系(淡水),海水种有黄、东海的敖氏长臂虾及细指长臂虾,属于北太平洋温带区系(海水、半咸水)。隐虾亚科全部为海洋种,主要分布在热带、亚热带海域,以珊瑚礁为主要栖息地,大部分分布于印度－西太平洋海域,80%以上的种类或多或少与其他海洋生物共栖,自由生活的种很少。根据推论,隐虾类的起源中心应在印度－西太平洋热带水域的珊瑚礁环境, 并在这一水域得到了充分的分化与发展,分别适应与腔肠动物、双壳类软体动物、海绵动物、棘皮动物和海鞘类被囊动物共栖生活;而热带美洲的类群则是在隐虾类演化到可与石珊瑚类共栖时由印度－西太平洋水域扩散过去的, 共栖宿主仅涉及腔肠动物和棘皮动物。我国南海水域已发现31属96种,极少数种也分布到东海,属于印度－西太平洋热带水域珊瑚礁区系。     

The round goby (Neogobius melanostomus) in the Gulf of Gdańsk – a species introduction into the Baltic Sea

In recent years, information concerning the awareness of organisms accidentally introduced into the Baltic Sea has substantially improved. Non-indigenous Estuarine and Marine Organisms (NEMO's) are hazardous for the Baltic ecosystem. Currently, about one hundred species are identified as accidentally or intentionally introduced into the Baltic Sea. Ballast waters and escape from aquaculture are the most important invasion vectors. During the last decade, an invasion of the round goby (Neogobius melanostomus) – a Ponto-Caspian fish species has been observed in the Gulf of Gdańsk. The first record of this fish in the Baltic Sea is from 1990. Early detection of the invader enabled the study of population growth and changes in the area. The first years of invasion were characterized by low numbers of individuals and a limited distribution. Later, the round goby gradually colonized all shallow waters in the western part of the Gulf of Gdańsk. Initially the fish inhabited stony and rocky habitats, but later it also occupied sandy bottoms. The round goby is now the dominating fish species in most of the shallow waters of the Gulf of Gdańsk. Two main factors account for the successful invasion of this fish in the region: the state of ecosystem at the time of the invasion and the biological features of N. melanostomus. In the late 1980s, the shallow waters of the Gulf of Gdańsk were almost devoid of piscivorous fishes. Concurrently, bivalves (a preferred prey of the round goby) have increased. Important is also parental care of laid eggs and reproductive strategy. Population growth potential enables the colonization of nearby regions. The first round gobies in the Vistula Lagoon were collected in 1999 and colonization of other Baltic Sea areas is anticipated.     

The role of deep reefs in shallow reef recovery: an assessment of vertical connectivity in a brooding coral from west and east Australia

Approximately one quarter of zooxanthellate coral species have a depth distribution from shallow waters (<30 m) down to mesophotic depths of 30-60 m. The deeper populations of such species are less likely to be affected by certain environmental perturbations, including high temperature/high irradiance causing coral bleaching. This has led to the hypothesis that deep populations may serve as refuges and a source of recruits for shallow reef habitats. The extent of vertical connectivity of reef coral species, however, is largely unquantified. Using 10 coral host microsatellite loci and sequences of the host mtDNA putative control region, as well as ribosomal DNA (rDNA) ITS2 sequences of the coral's algal endosymbionts (Symbiodinium), we examine population structure, connectivity and symbiont specificity in the brooding coral Seriatopora hystrix across a depth profile in both northwest (Scott Reef) and northeast Australia (Yonge Reef). Strong genetic structuring over depth was observed in both regions based on the microsatellite loci; however, Yonge Reef exhibited an additional partitioning of mtDNA lineages (associated with specific symbiont ITS2 types), whereas Scott Reef was dominated by a single mtDNA lineage (with no apparent host-symbiont specificity). Evidence for recruitment of larvae of deep water origin into shallow habitats was found at Scott Reef, suggesting that recovery of shallow water habitats may be aided by migration from deep water refuges. Conversely, no migration from the genetically divergent deep slope populations into the shallow habitats was evident at Yonge Reef, making recovery of shallow habitats from deeper waters at this location highly unlikely.     

Biosociology and ecology of pomacentrid fishes around the Sinai Peninsula (northern Red Sea)

Pomacentrid fishes inhabiting the coral formations along the Red Sea coast of Sinai Peninsula form specific groups of species on various habitats. Amphirion bicinctus, Dascyllus aruanus, D. marginatus and Pomacentrus trichourus are typical for the backreef lagoon; Pomacentrus sulfureus, Abudefduf melanopus and A. melas are common along the rearreef wall; Pomacentrus albicaudatus, P. tripunctatus, Abudefduf lacrymatus, A. leucozona and A. annulatus dominate the coral reef table. The forereef wall is occupied by Abudefduf saxatilis, A. sexfasciatus and A. leucogaster . The lower part of the forereef and coral knolls along it are inhabited by groups of Abudefduf azysron, Chromis dimidiatus, C. caeruleus, C. ternatensis and of the Dascyllus trimaculatus . Among the fishes observed a part are living in groups or schools, whereas others are typical solitary, permanent territory holders. Most of them are polygamous, breeding in colonies, or solitary in nests, guarded by males. The variation in feeding behaviour as well as in sociobiology, enables the high diversity of these fishes on various parts of the habitat.     

Into the depth of population genetics: pattern of structuring in mesophotic red coral populations

Deep-sea reef-building corals are among the most conspicuous invertebrates inhabiting the hard-bottom habitats worldwide and are particularly susceptible to human threats. The precious red coral (Corallium rubrum, L. 1758) has a wide bathymetric distribution, from shallow up to 800 m depth, and represents a key species in the Mediterranean mesophotic reefs. Several studies have investigated genetic variability in shallow-water red coral populations, while geographic patterns in mesophotic habitats are largely unknown. This study investigated genetic variability of C. rubrum populations dwelling between 55 and 120 m depth, from the Ligurian to the Ionian Sea along about 1500 km of coastline. A total of 18 deep rocky banks were sampled. Colonies were analyzed by means of a set of microsatellite loci and the putative control region of the mitochondrial DNA. Collected data were compared with previous studies. Both types of molecular markers showed high genetic similarity between populations within the northern (Ligurian Sea and Tuscan Archipelago) and the southern (Tyrrhenian and Ionian seas) study areas. Variability in habitat features between the sampling sites did not affect the genetic variability of the populations. Conversely, the patchy distribution of suitable habitats affected populations’ connectivity within and among deep coral banks. Based on these results and due to the emphasis on red coral protection in the Mediterranean Sea by international institutions, red coral could be promoted as a ‘focal species’ to develop management plans for the conservation of deep coralligenous reefs, a reservoir of marine biodiversity.     

Southeast Alaska: oceanographic habitats and linkages

We provide an overview of the physical oceanographic and geological processes that affect marine biological habitats and production in the marine waters throughout the archipelago and continental shelf of Southeast Alaska. Given the paucity of regional data, our overview summarizes work done in adjacent regions of the Gulf of Alaska shelf and basin, and draws on research carried out in similar settings elsewhere. The geological setting, which critically influences the regional meteorology and oceanography, includes a narrow continental shelf, deep channels that permeate the archipelago, fjords, glaciers and a rugged, mountainous coast. The large-scale meteorology is influenced primarily by seasonal variations in the intensity and position of the Aleutian Low. Winds, freshwater runoff, tides and cross-shelf exchange control the regional oceanography. The large-scale flow field advects mass, heat, salt, nutrients and planktonic organisms northward from British Columbia (and even further south) to the northern Gulf of Alaska along the slope, shelf, and within the channels of Southeast Alaska. The deep channels permeating the island archipelago and narrow continental shelf facilitate communication between basin and interior waters. Water properties and flow fields are subject to large annual variations in response to similarly large variations in winds and coastal freshwater discharge. The complex geological setting leads to large spatial heterogeneity in the physical processes controlling the local circulation fields and mixing, thereby creating numerous and diverse marine biological habitats. These various circulation and mixing processes modify substantially Southeast Alaska water masses and thus influence marine ecosystem processes downstream over the northern and western Gulf of Alaska shelf.     

SPINNER DOLPHINS (STENELLA LONGIROSTRIS) OF THE WESTERN PACIFIC AND SOUTHEAST ASIA: PELAGIC AND SHALLOW-WATER FORMS1

A dwarf form of the spinner dolphin has been reported from the Gulf of Thailand, while more typical large spinner dolphins have been described from Japanese waters and other localities in the western Pacific. These reports have been based on very few specimens. Our purpose in this study was to determine the affinities of spinner dolphins throughout the region based on larger samples and to review their taxonomic status, with an hypothesis of two widespread ecotypic forms, or subspecies. We examined 213 osteological specimens, from a tuna gillnet fishery in the Philippines, from the former Taiwanese shark gillnet fishery in the Timor and Arafura Seas off northern Australia, from the Gulf of Thailand, from other areas in the western Pacific and Southeast Asia, from the eastern Indian Ocean, and from the Central and South Pacific. Results show that spinner dolphins from the deep inner waters of the Philippines conform to the large pelagic type of spinner dolphin that inhabits the Central and South Pacific, the western Pacific and the eastern Indian Ocean. The skull is similar in size and shape to the holotype specimen of S. longirostris (from unknown locality). This form feeds primarily on small mesopelagic fishes and squids. Spinner dolphins from the shallow waters of inner Southeast Asia represented in the sample, including the Gulf of Thailand, Timor Sea and Arafura Sea, are smaller in body and skull size, have fewer teeth and vertebrae, and feed mainly on benthic and coral reef fishes and invertebrates. We hypothesize that this form also inhabits the Java Sea and other shallow waters throughout inner Indonesia and Malaysia. We redescribe a subspecies corresponding to the small form and based on Delphinus roseiventris Wagner 1846 from the Arafura Sea, designating a neotype and paraneotype specimens.     

Evidence of artisanal fishing impacts and depth refuge in assemblages of Fijian reef fish

Protection from fishing generally results in an increase in the abundance and biomass of species targeted by fisheries within marine reserve boundaries. Natural refuges such as depth may also protect such species, yet few studies in the Indo Pacific have investigated the effects of depth concomitant with marine reserves. We studied the effects of artisanal fishing and depth on reef fish assemblages in the Kubulau District of Vanua Levu Island, Fiji, using baited remote underwater stereo-video systems. Video samples were collected from shallow (5–8 m) and deep (25–30 m) sites inside and outside of a large old marine reserve (60.6 km², 13 years old) and a small new marine reserve (4.25 km², 4 years old). Species richness tended to be greater in the shallow waters of the large old reserve when compared to fished areas. In the deeper waters, species richness appeared to be comparable. The difference in shallow waters was driven by species targeted by fisheries, indicative of a depth refuge effect. In contrast, differences in the abundance composition of the fish assemblage existed between protected and fished areas for deep sites, but not shallow. Fish species targeted by local fisheries were 89% more abundant inside the large old reserve than surrounding fished areas, while non-targeted species were comparable. We observed no difference in the species richness or abundance of species targeted by fisheries inside and outside of the small new reserve. This study suggests that artisanal fishing impacts on the abundance and species richness of coral reef fish assemblages and effects of protection are more apparent with large reserves that have been established for a long period of time. Observed effects of protection also vary with depth, highlighting the importance of explicitly incorporating multiple depth strata in studies of marine reserves.     

Habitat specialization in tropical continental shelf demersal fish assemblages

The implications of shallow water impacts such as fishing and climate change on fish assemblages are generally considered in isolation from the distribution and abundance of these fish assemblages in adjacent deeper waters. We investigate the abundance and length of demersal fish assemblages across a section of tropical continental shelf at Ningaloo Reef, Western Australia, to identify fish and fish habitat relationships across steep gradients in depth and in different benthic habitat types. The assemblage composition of demersal fish were assessed from baited remote underwater stereo-video samples (n = 304) collected from 16 depth and habitat combinations. Samples were collected across a depth range poorly represented in the literature from the fringing reef lagoon (1-10 m depth), down the fore reef slope to the reef base (10-30 m depth) then across the adjacent continental shelf (30-110 m depth). Multivariate analyses showed that there were distinctive fish assemblages and different sized fish were associated with each habitat/depth category. Species richness, MaxN and diversity declined with depth, while average length and trophic level increased. The assemblage structure, diversity, size and trophic structure of demersal fishes changes from shallow inshore habitats to deeper water habitats. More habitat specialists (unique species per habitat/depth category) were associated with the reef slope and reef base than other habitats, but offshore sponge-dominated habitats and inshore coral-dominated reef also supported unique species. This suggests that marine protected areas in shallow coral-dominated reef habitats may not adequately protect those species whose depth distribution extends beyond shallow habitats, or other significant elements of demersal fish biodiversity. The ontogenetic habitat partitioning which is characteristic of many species, suggests that to maintain entire species life histories it is necessary to protect corridors of connected habitats through which fish can migrate.     

Comparative spatial ecology of fished spiny lobsters <Emphasis Type="Italic">Panulirus argus</Emphasis> and an unfished congener <Emphasis Type="Italic">P. guttatus</Emphasis> in an isolated marine reserve at Glover's Reef atoll,Belize

Palinurid lobsters are being exploited with increasing intensity in coral reef ecosystems, but marine protected areas may play a key role in preventing overfishing and local extinctions. In order to define the spatial requirements for protection, we compared the spatial and temporal patterns in distribution, density, biomass, size structure, and reproductive seasonality of Caribbean spiny lobsters Panulirus argus and the congeneric spotted lobsters P. guttatus on coral patch reef, forereef, and deep reef habitat at Glover's Reef, Belize. The relative impact of fishing on P. argus was also examined in an isolated marine reserve and adjacent fished habitats, in comparison with the relatively unfished distribution of P. guttatus. Over a 5-year period, both species co-occurred in all major reef habitats, but aspects of their population dynamics differed markedly due to both habitat and fishing effects. All size classes of spiny lobsters P. argus occupied shallow patch reefs, but large adults were predominant on the deep wall reef. Panulirus guttatus also occupied patch reefs in the lagoon, but spur-and-groove forereef appeared to be the primary habitat of this species. Density and exploitable (adult) biomass of P. argus increased significantly over time in the protected patch reef habitat of the lagoon but remained stable on deep reef habitat. The biomass of spotted lobsters P. guttatus in all habitats was at least an order of magnitude less than that of exploitable P. argus. Reproductive activity by both species was evident most of the year in all habitats, but breeding P. argus females were concentrated on the deep reef. Commercial fisheries for spotted lobsters P. guttatus are currently being considered for development, but data from this and other studies suggest that such a fishery may be relatively unproductive and may lead to rapid localized extinctions. Spiny lobsters P. argus used a variety of coral reef habitats, but spotted lobsters P. guttatus were habitat specialists restricted to shallow reef habitat. The protection needs of both species are similar in one aspect: large protected areas. However, P. argus required large areas with heterogeneous habitats including coral reefs and seagrass beds, whereas P. guttatus required large areas of coral reef habitat.     

Environmentally controlled succession in a late Pleistocene coral reef (Sinai, Egypt)

The concept of ecological succession has been frequently applied in the study of ancient reefs. Whereas Paleozoic and Mesozoic reefs are commonly thought to reveal an autogenic primary—climax zonation, patterns in Neogene and Quaternary reefs are much more diverse. Here, we describe a well-preserved late Pleistocene coral reef from Dahab on Sinai Peninsula (Egypt), which shows a distinct zonation that resembles an ecological succession. In contrast to classical examples of ecological successions, species composition, paleoenvironmental conditions, and coral biodiversity of the Dahab reef indicate an allogenic, sea-level controlled community change, from marginal marine to reef slope and back reef. A review of the literature confirms that autogenic, short-term successions are virtually absent in Quaternary reefs. We predict that long generation times of corals make it unlikely that classical autogenic successions develop in reefs at all, unless environmental conditions are unusually stable.