Influence of the herbicide glyphosate on soil microbial community structure

The side effects of glyphosate on the soil microflora were monitored by applying a range of glyphosate concentrations (0, 2, 20, and 200 μg g⁻¹ herbicide) to incubated soil samples, and following changes in various microbial groups over 27 days. Bacterial propagule numbers were temporarily enhanced by 20 μg g⁻¹ and 200 μg g⁻¹ glyphosate, while actinomycete and fungal propagule numbers were unaffected by glyphosate. The frequency of three fungal species on organic particles in soil was temporarily enhanced by 200 μg g⁻¹ glyphosate, while one was inhibited. One species was temporily enhanced on mineral particles. However, many of these fungi were inhibited by 200 μg g⁻¹ glyphosate in pure culture. There was little agreement between species responses to glyphosate in incubated soil samples and in pure culture.     

Factors affecting the microbial degradation of phenanthrene in soil

Summary Because phenanthrene was mineralized more slowly in soils than in liquid media, a study was conducted to determine the environmental factors that may account for the slow biodegradation in soil. Mineralization was enhanced by additions of phosphate but not potassium, and it was reduced by additions of nitrate. Aeration or amending the soil with glucose affected the rate of mineralization, although not markedly. Phenanthrene was sorbed to soil constituents, the extent of sorption being directly related to the percentage of organic matter in the soil. Soluble phenanthrene was not detected after addition of the compound to a muck soil. The rate of mineralization was slow in the organic soil and higher in mineral soils with lower percentages of organic matter. We suggest that sorption by soil organic matter slows the biodegradation of polycyclic aromatic hydrocarbons that are otherwise readily metabolized. Offprint requests to: M. Alexander     

Reclamation of abandoned saline-alkali soil increased soil microbial diversity and degradation potential

Plant and Soil - Reclamation of saline-alkali soils to grow cotton (Gossypium spp.) is very common in the arid Manas River Basin in Northwest China. However, little is known about the degradation...     

Absorption and efflux of glyphosate by cell suspensions

The absorption and efflux of [¹⁴C]-glyphosate (N-[phosphonomethyl]glycine) was studied in maize (Zea mays L. cv. Aussie) and soybean (Glycine max L. Merr. cv. Maple Arrow) cell suspensions. Glyphosate absorption was complex: at low external herbicide concentrations (3-250 M) there was evidence for a single active uptake system with an apparent Km of 31 M and Vmax of 11 nmol g^-1 fr. wt. 2 h^-1. The system was inhibited by carbonylcyanide m-chlorophenyl hydrazone (CCCP), orthovanadate, diethylstilbestrol (DES), phosphate, and phosphonoformic acid (PFA) suggesting the glyphosate carrier to be a phosphate transporter energized by the plant plasmalemma ATPase. At higher external glyphosate concentrations the operation of this carrier was masked as passive diffusion became the dominant absorption mechanism. Any non-specific binding of glyphosate to the cell surface during absorption was low (0.02-0.02 nmol g^-1 fr. wt). Efflux kinetics of [¹⁴C]-glyphosate suggests the herbicide to be located in the cells in three kinetically distinct compartments: after 24 h uptake of radiolabelled herbicide, 71% of absorbed glyphosate was found in the slow compartment (t1/2 162 h), 19% in the medium (t1/2 185 min) and 10% in the fast (t1/2 27 min). The implications of these results in relation to the delivery of glyphosate to its subcellular target site and subsequent phytotoxicity are discussed.Keywords: Zea mays, Glycine max, glyphosate (N-[phosphonomethyl]glycine), absorption, compartmentation.      

Linking toluene degradation with specific microbial populations in soil

Phospholipid fatty acid (PLFA) analysis of a soil microbial community was coupled with (13)C isotope tracer analysis to measure the community's response to addition of 35 microg of [(13)C]toluene ml of soil solution(-1). After 119 h of incubation with toluene, 96% of the incorporated (13)C was detected in only 16 of the total 59 PLFAs (27%) extracted from the soil. Of the total (13)C-enriched PLFAs, 85% were identical to the PLFAs contained in a toluene-metabolizing bacterium isolated from the same soil. In contrast, the majority of the soil PLFAs (91%) became labeled when the same soil was incubated with [(13)C]glucose. Our study showed that coupling (13)C tracer analysis with PLFA analysis is an effective technique for distinguishing a specific microbial population involved in metabolism of a labeled substrate in complex environments such as soil.     

Physical properties of microbial suspensions

Physical properties of suspensions of Saccharomyces cerevisiae, Candida utilis and Escherichia coli (density, viscosity and surface tension) were measured in synthetic suspensions formed of centrifuged biomass and supernatants from various stages of batch cultivation in the range from 0 to 10% w/v for yeasts and from 0 to 0.25% w/v for bacteria. Surface tension was also measured in native suspensions in the range of 0 less than or equal to Cm less than or equal to 2.0% w/v. All single cell suspensions were found to be Newtonian in behaviour. Densities strictly obey the mixing law, viscosities of Saccharomyces cerevisiae suspensions were correlated by an empirical relation in dependence of Cm and t, surface tensions were correlated graphically for suspensions of Saccharomyces cerevisiae and Escherichia coli, since experiments with both microorganisms have shown that the previously published approximate correlation can safely be used.     

Physical properties of microbial suspensions

A way of characterizing cell size distribution in suspensions of single-cell microorganisms is suggested, based on the first and second moments around origin. Suspension density may be predicted on the basis of the mixing law and the density of microbial dry matter, for suspensions ofSaccharomyces cerevisiae, Candida lipolytica, andAspergillus niger. Newtonian viscosities were correlated using regression analysis by η=Aexp(BC _m)exp(D/t); another correlation is presented for the calculation of surface tension in single-cell microbial suspensions. All the relations are valid in the range of concentrations up to 15% (w/v) and for temperatures between 15° and 35°C. The formulae presented may be used in other hydraulic studies.     

The microbial degradation of azimsulfuron and its effect on the soil bacterial community

AIMS: Azimsulfuron is a recently introduced sulfonylurea herbicide useful in controlling weeds in paddy fields. To date very little information is available on the biodegradation of this pesticide and on its effect on the soil microbial community. The aim of this work was to study its biodegradation both in slurry soil microcosms and in batch tests with mixed and pure cultures. METHODS AND RESULTS: Azimsulfuron was applied to forest bulk soil in order to study its effect on the structure of the bacterial soil community, as detectable by denaturant gradient gel electrophoresis (DGGE) analyses. Biodegradation and abiotic processes were investigated by HPLC analyses. In addition, a microbial consortium was selected, that was able to use azimsulfuron as the sole energy and carbon source. One of the metabolites produced by the consortium was isolated and identified through LC-MS analyses. Cultivable bacteria of the consortium were isolated and identified by 16S rDNA sequencing (1400 bp). CONCLUSIONS: Azimsulfuron treatment seems to have the ability to cause changes in the bacterial community structure that are detectable by DGGE analyses. It is easily biodegraded both in microcosms and in batch tests, with the formation of an intermediate that was identified as 2-methyl-4-(2-methyl-2H-tetrazol-5-yl)-2H-pyrazole-3-sulfonamide. SIGNIFICANCE AND IMPACT OF THE STUDY: The study increases the knowledge on the biodegradation of azimsulfuron and its effects on the soil microbiota.     

Chlorophenol removal from soil suspensions: Effects of a specialised microbial inoculum and a degradable analogue

Two soils of different contamination history were tested in slurry for their self-remediability towards mono-, di- and trisubstituted chlorophenols. The landfill soil showed poor ability in removing the compounds. Instead, the soil from the golf course, treated for many years with a 2,4,6-trichlorophenol derivative (Prochloraz), remediated different concentrations of the same 2,4,6TCP, 2,4-dichlorophenol and monochlorophenol isomers, singly and in mixtures, at varying degradation rates. Ralstonia eutropha TCP, a specialised microorganism capable of degrading 2,4,6TCP, proved highly efficient in removing the compound from both tested soils. The same microbial inoculum allowed total removal of the ternary mixture of monochlorophenol isomers from the golf course soil, but it did not accelerate the removal of the same compounds when singly supplied. The addition of phenol as a degradable analogue was more effective in co-metabolically removing not only the single monochlorophenols, but also their mixtures, the removal occurring faster and independently of the presence of the microbial inoculum. From the golf course soil, a microorganism, phenotypically and genetically identical to R. eutropha TCP, was isolated and classified as R. eutropha TCP II.     

Relative importance of the effect of 2,4-D,glyphosate, and environmental variables on the soil microbial biomass

Two post-emergence herbicides (glyphosate and 2,4-D) were applied at field application levels to tilled field plots in a mixed cropping area in south-central Alberta. The effects of these chemicals on certain variables associated with microbial biomass and activity were monitored in these plots (as well as corresponding control plots) for 45 days. Glyphosate did not influence any of the microbial variables tested. Addition of 2,4-D significantly influenced all microbial variables investigated but these effects were transient, being detectable only within the first 1–5 days of herbicide addition. The effects of 2,4-D addition on the microbial variables tested, even when significant, were typically small and probably of little ecological consequence especially when spatial and temporal variation in these variables is taken into account.     

Formation of bound residues during microbial degradation of [14C]anthracene in soil

Carbon partitioning and residue formation during microbial degradation of polycyclic aromatic hydrocarbons (PAH) in soil and soil-compost mixtures were examined by using [14C]anthracenes labeled at different positions. In native soil 43.8% of [9-14C]anthracene was mineralized by the autochthonous microflora and 45.4% was transformed into bound residues within 176 days. Addition of compost increased the metabolism (67.2% of the anthracene was mineralized) and decreased the residue formation (20. 7% of the anthracene was transformed). Thus, the higher organic carbon content after compost was added did not increase the level of residue formation. [14C]anthracene labeled at position 1,2,3,4,4a,5a was metabolized more rapidly and resulted in formation of higher levels of residues (28.5%) by the soil-compost mixture than [14C]anthracene radiolabeled at position C-9 (20.7%). Two phases of residue formation were observed in the experiments. In the first phase the original compound was sequestered in the soil, as indicated by its limited extractability. In the second phase metabolites were incorporated into humic substances after microbial degradation of the PAH (biogenic residue formation). PAH metabolites undergo oxidative coupling to phenolic compounds to form nonhydrolyzable humic substance-like macromolecules. We found indications that monomeric educts are coupled by C-C- or either bonds. Hydrolyzable ester bonds or sorption of the parent compounds plays a minor role in residue formation. Moreover, experiments performed with 14CO2 revealed that residues may arise from CO2 in the soil in amounts typical for anthracene biodegradation. The extent of residue formation depends on the metabolic capacity of the soil microflora and the characteristics of the soil. The position of the 14C label is another important factor which controls mineralization and residue formation from metabolized compounds.     

New approaches to identification and activity estimation of glyphosate degradation enzymes

We propose a new set of approaches, which allow identifying the primary enzymes of glyphosate (N-phosphonomethyl-glycine) attack, measuring their activities, and quantitative analysis of glyphosate degradation in vivo and in vitro. Using the developed approach we show that glyphosate degradation can follow different pathways depending on physiological characteristics of metabolizing strains: in Ochrobactrum anthropi GPK3 the initial cleavage reaction is catalyzed by glyphosate-oxidoreductase with the formation of aminomethylphosphonic acid and glyoxylate, whereas Achromobacter sp. MPS12 utilize C-P lyase, forming sarcosine. The proposed methodology has several advantages as compared to others described in the literature.     

Physiological aspects of glyphosate degradation in Alcaligenes spec. strain GL

Alcaligenes spec. strain GL (IMET 11314) is able to grow on glyphosate (N-[phosphonomethyl]glycine) and other phosphonates as sole source of phosphorus. Degradation of glyphosate to inorganic phosphate and sarcosine by this strain is subject to several regulatory principles. While uptake and dephosphonation of glyphosate are regulated by P_i starvation, the intensity of glyphosate degradation is also controlled by the cellular ability to utilize the C-skeleton derived from glyphosate. Depending on the external concentration of glyphosate, the liberated sarcosine is differentially metabolised. Utilization of the sarcosine moiety and complete incorporation of 3-[¹⁴C]-label of glyphosate into cellular material occur only in cultures adapted to higher concentrations (5 mM) of the herbicide. At low concentrations of glyphosate (1 mM) only the P_i required by the growing cultures is utilized but not the sarcosine. Initially high rates of glyphosate uptake obtained after P_i-starvation decrease in the presence of low glyphosate concentrations. It is suggested that uptake and metabolism of glyphosate are connected with the expression of the sarcosine metabolizing capacity of the Alcaligenes cells.Abbreviation AMPA aminomethylphosphonic acid     

Characterization of microbial traits associated with glyphosate biodegradation in industrial activated sludge

Summary The microorganisms from two industrial (I1, I2) activated sludges that treat glyphosate (N-phosphonomethyl glycine) wastes and one domestic (D1) sludge were enumerated by microscopic examination and by the use of eight selective media. I1 and I2 had higher total counts but fewer pseudomonads and no yeasts. The enumerations correlated directly with traditional biological performance measurements. A total of 393 microbial strains were isolated from the sludges to correlate the occurrence and relationship of glyphosate-degrading activity (GDA) to 155 biochemical and morphological characteristics. Each activated sludge contained unique bacterial populations with the microbes treating industrial wastes, capable of utilizing a wide range of carbohydrates. Numerical taxonomy (arithmetic average linkage) using simple matching and Jaccard coefficients confirmed that there were five (D1), three (I1), and 12 (I2) clusters. GDA was found in only a small portion of the industrial clusters and did not correlate with any other characteristic tested, even though the GDA strains had a large phenotypic diversity. This suggests that GDA is not a universal trait and its expression requires enrichment through specific selective pressures.     

Shift in microbial population in response to crystalline cellulose degradation during enrichment with a semi-desert soil

Addition of crystalline cellulose to semi-desert soil shifts the microbial population; this was assessed by following the 16S rRNA gene, glycosyl hydrolase, and measuring its functional diversity in the bacterial population. Quantification of the glycosyl hydrolase gene showed an increase from 1 × 10⁴ g⁻¹ of unamended soil to 3 × 10⁴ g⁻¹ of crystalline-cellulose-amended soil by the 15th day of crystalline cellulose utilization. The indigenous glycosyl hydrolase community in unamended soil was dominated by the clone families that were closely related to the glycosyl hydrolases from Betaproteobacteria and Firmicutes. The addition of crystalline cellulose induced a shift in the glycosyl hydrolase population toward an increase in the relative abundance of the glycosyl hydrolase that was consistent with those of Bacteroidetes and Flavobacteria. The population shift of glycosyl hydrolase was also supported by the comparison of the 16S rRNA gene families in unamended and crystalline-cellulose-amended soil libraries. The most abundant 16S rRNA gene sequences retrieved in the unamended soil were identical to Pseudomonas, Massilia, Paenibacillus, and Bacillus spp., while Cytophaga and Flavobacterium spp. dominated in crystalline-cellulose-amended soil.     

The microbial degradation of benzothiazoles

The biodegradation of benzothiazoles by pure and mixed microbial cultures derived from activated sludge has been studied. The degradation of 2-aminobenzothiazole (ABT) by both pure and mixed bacterial cultures has been demonstrated for the first time. ABT is degraded to give high yields of ammonia and sulphate (87 and 100 %, respectively of the theoretical yield). We also report for the first time the isolation of a pure bacterial culture PA, thought to be a strain of Rhodococcus , capable of growing on benzothiazole (BTH) itself as a sole carbon, nitrogen and energy source. Evidence is presented to suggest that this organism degrades BTH via the meta-cleavage pathway. The Rhodococcus PA degrades BTH but only releases a small proportion (5%) of the sulphur as sulphate. Mixed cultures containing this organism released ca 100% of the sulphur as sulphate, suggesting that other members of the consortium catalyse conversion of a sulphur-containing intermediate to sulphate. 2-Mercaptobenzothiazole (MBT) could not act as a growth substrate for any of the cultures studied but some could cause biotransformation of MBT to some extent. Attempts to obtain cultures degrading ABT and BTH from polluted river water were unsuccessful.     

The microbial degradation of morpholine

Morpholine can be completely degraded microbiologically, and two organisms have been isolated, each capable of growth in a simple mineral salts medium with morpholine as the sole source of carbon, nitrogen and energy. Excess nitrogen is liberated as ammonia. The enzymes responsible for the oxidation of morpholine are inducible and, in organism Mor G, will also oxidize piperidine, piperazine and pyrrolidine, which are not growth substrates. Ethanolamine is a likely intermediate, though the metabolic steps in morpholine degradation do not give rise solely to acetyl-CoA. After a period of acclimation, a laboratory scale activated sludge plant effectively removed morpholine over the long period it was operated; the sludge was also capable of nitrification. The possible effects of other chemicals in trade wastes containing morpholine on nitrification and morpholine oxidation are described.