Distribution of membrane lipids of planktonic Crenarchaeota in the Arabian Sea

Intact core tetraether membrane lipids of marine planktonic Crenarchaeota were quantified in water column-suspended particulate matter obtained from four depth intervals ( approximately 70, 500, 1,000 and 1,500 m) at seven stations in the northwestern Arabian Sea to investigate the distribution of the organisms at various depths. Maximum concentrations generally occurred at 500 m, near the top of the oxygen minimum zone, and the concentrations at this depth were, in most cases, slightly higher than those in surface waters. In contrast, lipids derived from eukaryotes (cholesterol) and from eukaryotes and bacteria (fatty acids) were at their highest concentrations in surface waters. This indicates that these crenarchaeotes are not restricted to the photic zone of the ocean, which is consistent with the results of recent molecular biological studies. Since the Arabian Sea has a strong oxygen minimum zone between 100 and 1,000 m, with minimum oxygen levels of <1 microM, the abundance of crenarchaeotal membrane lipids at 500 m suggests that planktonic Crenarchaeota are probably facultative anaerobes. The cell numbers we calculated from the concentrations of membrane lipids are similar to those reported for the Central Pacific Ocean, supporting the recent estimation of M. B. Karner, E. F. DeLong, and D. M. Karl ( Nature 409:507-510, 2001) that the world's oceans contain ca. 10(28) cells of planktonic Crenarchaeota.     

Contribution of Archaea to Total Prokaryotic Production in the Deep Atlantic Ocean

Fluorescence in situ hybridization (FISH) in combination with polynucleotide probes revealed that the two major groups of planktonic Archaea (Crenarchaeota and Euryarchaeota) exhibit a different distribution pattern in the water column of the Pacific subtropical gyre and in the Antarctic Circumpolar Current system. While Euryarchaeota were found to be more dominant in nearsurface waters, Crenarchaeota were relatively more abundant in the mesopelagic and bathypelagic waters. We determined the abundance of archaea in the mesopelagic and bathypelagic North Atlantic along a south-north transect of more than 4,000 km. Using an improved catalyzed reporter deposition-FISH (CARD-FISH) method and specific oligonucleotide probes, we found that archaea were consistently more abundant than bacteria below a 100-m depth. Combining microautoradiography with CARD-FISH revealed a high fraction of metabolically active cells in the deep ocean. Even at a 3,000-m depth, about 16% of the bacteria were taking up leucine. The percentage of Euryarchaeota and Crenarchaeaota taking up leucine did not follow a specific trend, with depths ranging from 6 to 35% and 3 to 18%, respectively. The fraction of Crenarchaeota taking up inorganic carbon increased with depth, while Euryarchaeota taking up inorganic carbon decreased from 200 m to 3,000 m in depth. The ability of archaea to take up inorganic carbon was used as a proxy to estimate archaeal cell production and to compare this archaeal production with total prokaryotic production measured via leucine incorporation. We estimate that archaeal production in the mesopelagic and bathypelagic North Atlantic contributes between 13 to 27% to the total prokaryotic production in the oxygen minimum layer and 41 to 84% in the Labrador Sea Water, declining to 10 to 20% in the North Atlantic Deep Water. Thus, planktonic archaea are actively growing in the dark ocean although at lower growth rates than bacteria and might play a significant role in the oceanic carbon cycle.     

Oxygen minimum expansion in the Sulu Sea,western equatorial Pacific,during the last glacial low stand of sea level

The Sulu Sea in the western equatorial Pacific is presently a shallowly-silled, dysaerobic, deep-marine basin. Deep waters in the Sulu Sea are ventilated through a single sill at 420 m depth which connects it to the China Sea. Benthic and planktonic foraminiferal oxygen and carbon isotope records, benthic and planktonic foraminiferal census data and total organic carbon measurements have been used to evaluate changes in water mass conditions in the Sulu Sea between the last glacial maximum (18,000 yrs. B.P.) and the present day.An increase in the abundance of the planktonic foraminiferaNeogloboquadrina dutertrei and relatively light planktonic foraminiferal δ¹⁸O values suggest that during the last glacial maximum surface water salinities were reduced in the Sulu Sea. Enhanced isolation of the basin due to glacio-eustatic lowering of sea level and reduced surface salinities resulted in stagnation of deep water and an expansion of the mid-water oxygen minimum layer. Increased organic carbon preservation at mid-water depths occurs at this time. Benthic carbon isotope data and an increase in the abundance of benthic foraminiferal species considered to prefer low oxygen environments support the conclusion of an oxygen-minimum expansion at mid-water depths during the last glacial maximum. At water depths greater than 4000 m, bottom waters appear to have maintained some degree of oxygenation during the last glacial maximum. Stronger Pacific Ocean trade winds at this time may have caused the influx of denser Celebes Sea surface water into the southern part of the Sulu Sea. The slow sinking of this water would have then ventilated bottom waters in this part of the basin.At the transition from glacial to interglacial conditions, rising sea level caused denser water to flow over the deepest sill into the Sulu Sea. Vertical circulation increased, resulting in a greater downward flux of oxygen and a dissipation of the oxygen minimum. Continued post-glacial sea level rise caused periodic ventilation of deep water until the present dysaerobic conditions were established.     

Contribution of Crenarchaeota and Bacteria to autotrophy in the North Atlantic interior

Marine Crenarchaeota are among the most abundant groups of prokaryotes in the ocean and recent reports suggest that they oxidize ammonia as an energy source and inorganic carbon as carbon source, while other studies indicate that Crenarchaeota use organic carbon and hence, live heterotrophically. We used catalysed reporter deposition fluorescence in situ hybridization (CARD‐FISH) to determine the crenarchaeal and bacterial contribution to total prokaryotic abundance in the (sub)tropical Atlantic. Bacteria contributed ～50% to total prokaryotes throughout the water column. Marine Crenarchaeota Group I (MCGI) accounted for ～5% of the prokaryotes in subsurface waters (100 m depth) and between 10 and 20% in the oxygen minimum layer (250–500 m depth) and deep waters (North East Atlantic Deep Water). The fraction of both MCGI and Bacteria fixing inorganic carbon, determined by combining microautoradiography with CARD‐FISH (MICRO‐CARD‐FISH), decreased with depth, ranging from ～30% in the oxygen minimum zone to < 10% in the intermediate waters (Mediterranean Sea Outflow Water, Antarctic Intermediate Water). In the deeper water masses, however, MCGI were not taking up inorganic carbon. Using quantitative MICRO‐CARD‐FISH to determine autotrophy activity on a single cell level revealed that MCGI are incorporating inorganic carbon (0.002–0.1 fmol C cell^?1 day^?1) at a significantly lower rate than Bacteria (0.01–0.6 fmol C cell^?1 day^?1). Hence, it appears that MCGI contribute substantially less to autotrophy than Bacteria. Taking the stoichiometry of nitrification together with our findings suggests that MCGI might not dominate the ammonia oxidation step in the mesopelagic waters of the ocean to that extent as the reported dominance of archaeal over bacterial amoA would suggest.     

Niche segregation of ammonia-oxidizing archaea and anammox bacteria in the Arabian Sea oxygen minimum zone

Ammonia-oxidizing archaea (AOA) and anaerobic ammonia-oxidizing (anammox) bacteria have emerged as significant factors in the marine nitrogen cycle and are responsible for the oxidation of ammonium to nitrite and dinitrogen gas, respectively. Potential for an interaction between these groups exists; however, their distributions are rarely determined in tandem. Here we have examined the vertical distribution of AOA and anammox bacteria through the Arabian Sea oxygen minimum zone (OMZ), one of the most intense and vertically exaggerated OMZs in the global ocean, using a unique combination of intact polar lipid (IPL) and gene-based analyses, at both DNA and RNA levels. To screen for AOA-specific IPLs, we developed a high-performance liquid chromatography/mass spectrometry/mass spectrometry method targeting hexose-phosphohexose (HPH) crenarchaeol, a common IPL of cultivated AOA. HPH-crenarchaeol showed highest abundances in the upper OMZ transition zone at oxygen concentrations of ca. 5 μ, coincident with peaks in both thaumarchaeotal 16S rDNA and amoA gene abundances and gene expression. In contrast, concentrations of anammox-specific IPLs peaked within the core of the OMZ at 600 m, where oxygen reached the lowest concentrations, and coincided with peak anammox 16S rDNA and the hydrazine oxidoreductase (hzo) gene abundances and their expression. Taken together, the data reveal a unique depth distribution of abundant AOA and anammox bacteria and the segregation of their respective niches by >400 m, suggesting no direct coupling of their metabolisms at the time and site of sampling in the Arabian Sea OMZ.     

Dibiphytanyl Ether Lipids in Nonthermophilic Crenarchaeotes

The kingdom Crenarchaeota is now known to include archaea which inhabit a wide variety of low-temperature environments. We report here lipid analyses of nonthermophilic crenarchaeotes, which revealed the presence of cyclic and acyclic dibiphytanylglycerol tetraether lipids. Nonthermophilic crenarchaeotes appear to be a major biological source of tetraether lipids in marine planktonic environments.     

Living Neogloboquadrina pachyderma sin and its distribution in the sediments from Oman and Somalia upwelling areas

Microfaunal analysis of plankton nets collected offshore Oman/Yemen and sediment traps offshore Somalia shows that Neogloboquadrina pachyderma sin is abundant during the SW monsoon upwelling. The sediment traps recorded the highest flux (136 specimens m⁻² day⁻¹) and the highest relative frequency (3.55% of the total foraminifera assemblage) of the species during this period. During the intermonsoon it became less abundant and decreased in size, and only very few N. pachyderma sin were found in the water column during the NE monsoon. Sediment trap and Recent sediment data collected along a downslope transect off Somalia show that the species frequency decreases offshore. The highest concentrations of N. pachyderma sin in plankton nets off Oman/Yemen were found at a depth of 300–500 m. However, the oxygen isotope compositions of N. pachyderma sin at the depth of 300–500 m and from the surface 8 m are identical, and also similar to that of Globigerina bulloides which reflects properties of the upper 25 m of the water column. The carbon isotope values are relatively consistent within the studied samples from both areas except for the specimens from the surface water samples offshore Oman/Yemen. The data show that the δ¹⁸O ratio of N. pachyderma sin is in equilibrium with the ambient water while the δ¹³C values are at least 0.8‰ lower. We infer that N. pachyderma sin in the Arabian Sea reproduces, grows and calcifies in the upper 25 m of the water column, but possibly descends into deeper waters later during its life cycle.     

Detection of microbial biomass by intact polar membrane lipid analysis in the water column and surface sediments of the Black Sea

The stratified water column of the Black Sea produces a vertical succession of redox zones, stimulating microbial activity at the interfaces. Our study of intact polar membrane lipids (IPLs) in suspended particulate matter and sediments highlights their potential as biomarkers for assessing the taxonomic composition of live microbial biomass. Intact polar membrane lipids in oxic waters above the chemocline represent contributions of bacterial and eukaryotic photosynthetic algae, while anoxygenic phototrophic bacteria and sulfate-reducing bacteria comprise a substantial amount of microbial biomass in deeper suboxic and anoxic layers. Intact polar membrane lipids such as betaine lipids and glycosidic ceramides suggest unspecified anaerobic bacteria in the anoxic zone. Distributions of polar head groups and core lipids show planktonic archaea below the oxic zone; methanotrophic archaea are only a minor fraction of archaeal biomass in the anoxic zone, contrasting previous observations based on the apolar derivatives of archaeal lipids. Sediments contain algal and bacterial IPLs from the water column, but transport to the sediment is selective; bacterial and archaeal IPLs are also produced within the sediments. Intact polar membrane lipid distributions in the Black Sea are stratified in accordance with geochemical profiles and provide information on vertical successions of major microbial groups contributing to suspended biomass. This study vastly extends our knowledge of the distribution of complex microbial lipids in the ocean.     

Late Quaternary biostratigraphy and paleotemperatures of the Red Sea and the Gulf of Aden based on planktonic foraminifera and pteropods

The quantitative distributions of planktonic foraminifera and pteropods were analyzed in seven Red Sea cores and two deep-sea cores from the Gulf of Aden and off Sokotra Island. Biostratigraphic intervals were distin-guished corresponding to oxygen-isotope stages 1–5 in the Red Sea and stages 1–3 in the Gulf of Aden.The faunal assemblages demonstrate that in the Red Sea hydrological conditions changed significantly during the Late Quaternary — especially at the last Glacial maximum, when water exchange at the Bab-el-Mandeb Straits was at a minimum and at the Pleistocene/Holocene boundary. At the end of deglaciation, water-exchange renewal and pluvial conditions resulted in surface salinity decrease and stable stratification, which was followed by a rise in planktonic fauna abundance and stagnation of bottom waters. The more constant composition of rather cold-water (subtropical) faunal assemblages in the Gulf of Aden during the last 40,000–50,000 yrs. points to more stable hydrological parameters and to local upwelling or influx of Arabian upwelling waters.During the last Stadial, mean annual sea-surface temperatures fell by at least 5°C compared to the present in the central part of the Red Sea and by 3.5°C in the western Gulf of Aden.     

Vertical structure of small metazoan plankton, especially noncalanoid copepods. I. Deep Arabian Sea

The abundance and vertical distribution of micro-metazoans sampledwith fine nets of 0.05 mm mesh size were studied at three stationsin the Arabian Sea during the intermonsoon period (April/May1987) and down to 1850 m depth. In the epipelagic zone (0–100m). values of biomass and metazoan abundance tended to be higherthan those reported for other tropical oceanic areas. In themesopelagic zone, which is characterized by an extreme oxygendeficiency between 100 and 1000 m depth, the abundance of metazoantaxa and species numbers of non-calanoid copepods were largelyreduced. However, intermediate abundance maxima occurred withinthis zone, which were dominated by specific metazoan taxa (copepods.appendicularians) and species of non-calanoids (Oncaea sp. C).In the bathypelagic zone below 1050 m, the species diversityof the dominant copepod family Oncaeidae increased substantially.Two-thirds of a total of 69 oncaeid species recovered were confinedto this layer. As most of them were small in size and occurredin low abundance only, the increase in total oncaeid densityand/or plankton biomass was less conspicuous. Dominant Oncaeaspecies in the bathypelagic zone were O.longipes and O.brodskii.The results are compared with published data from the ArabianSea and other tropical oceanic areas with and without an extrememesopelagic oxygen minimum zone Possible causes of the intermediateabundance maxima within the oxygen deficiency zone are discussed.     

中国海洋浮游端足类的物种多样性

中国海域已发现浮游端足类122种,呈现从北部往南部海区、从近海往外海区种数逐渐增加,且暖水性也逐渐增强的分布特征。渤海、黄海北部和西南部的浮游端足类同属暖温带分布,黄海东南部和东海西北部为暖温带分布和热带分布的过渡带,东海东部和东海西南部以及台湾海峡、南海均属热带分布,其中东海东部和南海中、南部热带大洋分布的特征显著。     

Latitudinal distribution of prokaryotic picoplankton populations in the Atlantic Ocean

Members of the prokaryotic picoplankton are the main drivers of the biogeochemical cycles over large areas of the world's oceans. In order to ascertain changes in picoplankton composition in the euphotic and twilight zones at an ocean basin scale we determined the distribution of 11 marine bacterial and archaeal phyla in three different water layers along a transect across the Atlantic Ocean from South Africa (32.9°S) to the UK (46.4°N) during boreal spring. Depth profiles down to 500 m at 65 stations were analysed by catalysed reporter deposition fluorescence in situ hybridization (CARD‐FISH) and automated epifluorescence microscopy. There was no obvious overall difference in microbial community composition between the surface water layer and the deep chlorophyll maximum (DCM) layer. There were, however, significant differences between the two photic water layers and the mesopelagic zone. SAR11 (35 ± 9%) and Prochlorococcus (12 ± 8%) together dominated the surface waters, whereas SAR11 and Crenarchaeota of the marine group I formed equal proportions of the picoplankton community below the DCM (both ～15%). However, due to their small cell sizes Crenarchaeota contributed distinctly less to total microbial biomass than SAR11 in this mesopelagic water layer. Bacteria from the uncultured Chloroflexi‐related clade SAR202 occurred preferentially below the DCM (4–6%). Distinct latitudinal distribution patterns were found both in the photic zone and in the mesopelagic waters: in the photic zone, SAR11 was more abundant in the Northern Atlantic Ocean (up to 45%) than in the Southern Atlantic gyre (～25%), the biomass of Prochlorococcus peaked in the tropical Atlantic Ocean, and Bacteroidetes and Gammaproteobacteria bloomed in the nutrient‐rich northern temperate waters and in the Benguela upwelling. In mesopelagic waters, higher proportions of SAR202 were present in both central gyre regions, whereas Crenarchaeota were clearly more abundant in the upwelling regions and in higher latitudes. Other phylogenetic groups such as the Planctomycetes, marine group II Euryarchaeota and the uncultured clades SAR406, SAR324 and SAR86 rarely exceeded more than 5% of relative abundance.     

In vitro activity of vancomycin, quinupristin/dalfopristin, and linezolid against intact and disrupted biofilms of staphylococci

 

Shed cells or disrupted parts of the biofilm may enter the circulation causing serious and very hard to treat biofilm-associated infections. The activity of antimicrobial agents against the shed cells/disrupted biofilms is largely unknown.

Methods

We studied the in vitro susceptibility of intact and disrupted biofilms of thirty clinical isolates of methicillin-resistant and methicillin–susceptible Staphylococcus aureus (MRSA and MSSA) and Staphylococcus epidermidis to vancomycin, quinupristin/dalfopristin, and linezolid and compared it to that of the suspended (planktonic) cells.

Results

Bacteria in the disrupted biofilms were as resistant as those in the intact biofilms at the minimum inhibitory concentrations of the antibiotics. At higher concentrations, bacteria in the disrupted biofilms were significantly (P < 0.001) less resistant than those in the intact biofilms but more resistant than the planktonic cells. Quinupristin/dalfopristin showed the best activity against cells of the disrupted biofilms at concentrations above MICs and vancomycin, at 500 and 1,000 μg/ml, was significantly more active against the biofilms of MRSA and S. epidermidis

Conclusion

The difficulty of treating biofilm-associated infections may be attributed not only to the difficulty of eradicating the biofilm focus but also to the lack of susceptibility of cells disrupted from the biofilm to antimicrobial agents.     

Hypoxia tolerance in the copepod Calanoides carinatus and the effect of an intermediate oxygen minimum layer on copepod vertical distribution in the northern Benguela Current upwelling system and the Angola-Benguela Front

There is a growing concern that hypoxic and anoxic areas in the sea spread in extent and intensity, posing a severe risk to marine ecosystems and fisheries. Hypoxia may affect fish stocks directly or via detrimental effects on important prey species, such as zooplankton. A unique feature of the northern Benguela Current upwelling region and Angola-Benguela frontal system is a pronounced intermediate oxygen minimum layer (IOML) at 60-500 m depth with oxygen concentrations ≤ 1.4 mg O₂l^− 1 (minimum < 0.7 mg O₂l^− 1). Field studies during February-March 2002 demonstrated that the abundance of calanoid copepods and the biomass of mesozooplankton in general were severely reduced within the IOML. The dominant copepod Calanoides carinatus showed a bimodal vertical distribution with parts of the population either comprising all developmental stages concentrated in the surface layer (0-60 m), or copepodids C5 diapausing below 400 m depth apparently avoiding the IOML. Accordingly, abundances of other calanoid copepods were higher at the surface and below 300 m than in the centre of the IOML. The scarcity of planktonic life within the IOML raises the question whether this layer represents an effective barrier for zooplankton vertical migrations. Especially in C. carinatus, ontogenetic vertical migration plays a key role in the retention of the population within the productive upwelling region and for the rapid re-colonisation of plumes of newly upwelled water. To address this issue, the hypoxia tolerance of C. carinatus was determined in a series of laboratory-based, closed-bottle experiments in January 2005. Copepods were kept in gas-tight bottles and the decreasing oxygen concentrations were monitored to establish their minimum oxygen demands. Although copepodids survived apparently unharmed at surprisingly low oxygen concentrations of ca. 1.5 mg O₂l^− 1, they could not tolerate oxygen levels < 1.1 mg O₂l^− 1, implying that the core of the IOML, where O₂ concentrations are below this threshold, is uninhabitable for C. carinatus. In contrast, the IOML may represent a refuge from competition and predation for other copepod species specifically adapted to hypoxic environments.     

Comparison of Vertical Distributions of Prokaryotic Assemblages in the Anoxic Cariaco Basin and Black Sea by Use of Fluorescence In Situ Hybridization

Individual prokaryotic cells from two major anoxic basins, the Cariaco Basin and the Black Sea, were enumerated throughout their water columns using fluorescence in situ hybridization (FISH) with the fluorochrome Cy3 or horseradish peroxidase-modified oligonucleotide probes. For both basins, significant differences in total prokaryotic abundance and phylogenetic composition were observed among oxic, anoxic, and transitional (redoxcline) waters. Epsilon-proteobacteria, Crenarchaeota, and Euryarchaeota were more prevalent in the redoxclines, where previous studies reported high rates of chemoautotrophic production relative to those in waters above and below the redoxclines. Relative abundances of Archaea in both systems varied between 1% and 28% of total prokaryotes, depending on depth. The prokaryotic community composition varied between the two anoxic basins, consistent with distinct geochemical and physical conditions. In the Black Sea, the relative contributions of group I Crenarchaeota (median, 5.5%) to prokaryotic communities were significantly higher (P < 0.001; n = 20) than those of group II Euryarchaeota (median, 2.9%). In contrast, their proportions were nearly equivalent in the Cariaco Basin. Beta-proteobacteria were unexpectedly common throughout the Cariaco Basin's water column, accounting for an average of 47% of 4′,6′-diamidino-2-phenylindole (DAPI)-stained cells. This group was below the detection limit (<1%) in the Black Sea samples. Compositional differences between basins may reflect temporal variability in microbial populations and/or systematic differences in environmental conditions and the populations for which they select.     

Ecophysiological capability ofMarenzelleria populations inhabiting North Sea estuaries: an overview

The metabolic responses ofMarenzelleria cf.wireni, a newly established polychaete worm within North Sea estuaries, to various kinds of environmental stress are summarised. With respect to salinity,M. cf.wireni is able to deal with variations within a wide range. In the process of osmotic acclimation, free amino acids are involved. The major amino acid in terms of osmotic effector is glycine, followed by alanine. Under severe hypoxia,M. cf.wireni switches to an anaerobic metabolism, but at a very low oxygen partial pressure (<3 kPa), which indicates efficient utilisation of oxygen. Anaerobic energy production occurs predominantly via the succinate-propionate pathway. When exposed to hydrogen sulphide,M. cf.wireni is able to cope with high sulphide concentrations (up to 3 mmol l^?1), but the pattern of end products of the anaerobic energy metabolism changes. In terms of sulphide tolerance,M. cf.wireni probably is even better adapted than other, indigenous polychaetes. However, in comparison with the sibling speciesMarenzelleria viridis, which appeared at the same time in European waters but mainly inhabits the coastal inlets of the Baltic Sea in high numbers, the metabolic capabilities ofM. cf.wireni seem to be more limited at higher sulphide concentrations (>1 mmol l^?1). This might have an influence on the distribution pattern of the two sibling species.     

Lipid profiles of Nematocarcinus gracilis a deep-sea shrimp from below the Arabian Sea oxygen minimum zone

Specimens of the deep-sea benthic shrimp Nematocarcinus gracilis were collected from 900 m to 1000 m in the Arabian Sea, close to where the permanent oxygen minimum zone meets the sea floor. Lipid profiles, encompassing total lipid, lipid class and fatty acid composition, were compared with previously reported crustacean lipid assays and provided an insight into the life history of the species. The major storage lipid in N. gracilis was triglyceride, supporting the supposition that this species exists in benthic regions. Neutral lipid levels were commensurate with N. gracilis being an opportunistic feeder. Fatty acid composition was typical of an organism with a diet based on an ultimately photosynthetic source of organic carbon, but also reflected the reduction in the availability of labile organic carbon (in the case of lipid, highly unsaturated fatty acids) in the deep sea.     

Psammaplysin F: A unique inhibitor of bacterial chromosomal partitioning

Described is the antibiotic activity of a marine natural product. Psammaplysin F (1) inhibited the growth of four Gram-positive strains by >80% at 50 μM, and the amine at position C-20 is responsible for the observed antibacterial activity. When tested against two strains of methicillin resistant Staphylococcus aureus (MRSA), the minimum inhibitory concentrations (MICs) for psammaplysin F (40–80 μM) were similar to the structurally-related alkaloid psammaplysin H (2). Psammaplysin F (1) increased membrane permeability by two to four-fold compared to psammaplysin H (2) or control-treated bacteria, respectively. Unlike psammaplysin H (2), we show that psammaplysin F (1) inhibits equal partitioning of DNA into each daughter cell, suggesting that this natural product is a unique prokaryotic cell division inhibitor.     

The microcopepod fauna in the Eastern Mediterranean and Arabian Seas: a comparison with the Red Sea fauna

Multiple opening-closing nets of 0.05 mm mesh size were employed to study the community structure and vertical distribution of microcopepods at selected stations in the Red Sea, Arabian Sea and Eastern Mediterranean Sea down to a maximum depth of 1850 m. Calanoids, cyclopoids (Oithona and Paroithona) and poecilostomatoids (mainly Oncaea) were the 3 most abundant orders. In the epipelagic zone (0–100 m), these orders occurred at similar abundance levels, whereas in the meso- and bathypelagic zones the poecilostomatoid genus Oncaea dominated numerically by about 60–80% of all copepodids.The species diversity of Oncaea in the Red Sea is compared with preliminary results from the two adjacent regions. In the deep Eastern Mediterranean Sea, the number of species appears to be similar to that in the deep Red Sea and low as compared to the deep Arabian Sea. In this latter area an extremely speciose Oncaea fauna was found at depth below the oxygen-minimum-zone (900–1850 m). The results are related to the differences in the hydrographic conditions of these 3 areas.     

Nonmarine Crenarchaeol in Nevada Hot Springs

Glycerol dialkyl glycerol tetraethers (GDGTs) are core membrane lipids of the Crenarchaeota. The structurally unusual GDGT crenarchaeol has been proposed as a taxonomically specific biomarker for the marine planktonic group I archaea. It is found ubiquitously in the marine water column and in sediments. In this work, samples of microbial community biomass were obtained from several alkaline and neutral-pH hot springs in Nevada, United States. Lipid extracts of these samples were analyzed by high-performance liquid chromatography-mass spectrometry and by gas chromatography-mass spectrometry. Each sample contained GDGTs, and among these compounds was crenarchaeol. The distribution of archaeal lipids in Nevada hot springs did not appear to correlate with temperature, as has been observed in the marine environment. Instead, a significant correlation with the concentration of bicarbonate was observed. Archaeal DNA was analyzed by denaturing gradient gel electrophoresis. All samples contained 16S rRNA gene sequences which were more strongly related to thermophilic crenarchaeota than to Cenarchaeum symbiosum, a marine nonthermophilic crenarchaeon. The occurrence of crenarchaeol in environments containing sequences affiliated with thermophilic crenarchaeota suggests a wide phenotypic distribution of this compound. The results also indicate that crenarchaeol can no longer be considered an exclusive biomarker for marine species.