Modeling Habitat Occupancy of Orange-Crowned Warblers in Managed Forests of Oregon and Washington,USA

Abstract: As part of a habitat management planning process for commercially managed forests, we developed and evaluated habitat occupancy models for the orange-crowned warbler (Vermivora celata), a conservation priority species in Oregon and Washington, USA. We used repeated surveys to classify a random sample of managed conifer stands at the McKenzie, PeEll, and Tolt study sites in western Oregon and Washington as either occupied or unoccupied during 1994–1995. We modeled occupancy and detection probabilities as a function of stand-level habitat characteristics subject to manipulation by management activities. The best-fitting model indicated that orange-crowned warblers were 2 times (95% CI: 0.99-5.1) and 3.8 times (95% CI: 1.5–6.1) as likely to occupy a stand for every 5% increase in evergreen shrub cover and 5-m decrease in canopy lift (ht to lowest live branch), respectively. Management actions that maintain evergreen shrub cover >10% and permit development of low canopy lifts (4–10 m) should promote habitat occupancy by the orange-crowned warbler in commercial forests in western Oregon and Washington.     

Population genetics of Great Basin feral horses

The genetic make-up of Great Basin wild (feral) horses was investigated by blood typing studies. Blood samples of 975 feral horses from seven trap sites in Nevada and Oregon were tested by serological and electrophoretic techniques for genetic markers at 19 polymorphic loci. The average number of variants for the seven feral populations [72·1 ± 3·2 (SEM), range 62–85] was not significantly different from that of 16 domestic breeds (75·0 ± 11·5, range 58–105). The expected average frequency of heterozygotes per locus (average heterozygosity) for the feral populations (0·402 ± 0·009, range 0·368–0·442) was not significantly different from the domestic breeds (0·389 ± 0·045, range 0·295–0·443). Dendrograms constructed using pairwise comparisons of Nei's distance measurements substantiated anecdotal accounts of the origins of Great Basin horses from Iberian, American saddle horse and draft horse breeds.     

Evaluation of Malolactic Bacteria Isolated from Oregon Wines

Oregon is a cool wine-producing region where grapes characteristically contain high concentrations of organic acids. To reduce the natural acidity and increase the microbiological stability and flavor complexity of the wine, malolactic fermentation is encouraged. In this study, strains of Leuconostoc oenos indigenous to Oregon wines were evaluated for their suitability to conduct malolactic fermentation in Oregon wines. Tests determined the malolactic activity of the Oregon isolates in comparison with commercial strains ML-34, PSU-1, MLT-kli, and ens 44-40 under various temperature and pH conditions. Sensitivities to sulfur dioxide, ethanol, and fumaric acid also were determined. Two Oregon strains, Er-1a and Ey-2d, were selected for commercial winemaking tests because they had greater malolactic activity under conditions of low pH (3.0) and low temperature (15 and 8°C), respectively.     

Human Dental Development,Morphology, and Pathology—A Tribute to Albert A. Dahlberg.

Edited by John R. Lukacs. 1998. Eugene: University of Oregon Anthropological Papers (Number 54). 447 pp. ISBN 0-87114-060-8. $39.95 (paper).     

Basin-Scale Surveys of Stream-Associated Amphibians in Intensively Managed Forests

Abstract: Conservation and management of native species on landscapes managed for intensive wood production represents an ongoing challenge to forest managers. Previous research suggests that impacts of forest practices on stream-associated amphibians (SAA; giant [Dicamptodon spp.], torrent [Rhyacotriton spp.], and plethodontid [Plethodon spp.] salamanders and coastal tailed frogs [Ascaphus truei]) in Oregon and Washington, USA, vary spatially and temporally as a result of biotic and abiotic factors, some of which can be influenced by management treatments. Although individual harvest units can encompass multiple stream reaches and entire second-order basins, nearly all published research studies used stream reaches of various lengths as sample units. To address this discrepancy between research and operational scales, we sampled first-, second-, and third-order streams in 70 randomly selected third-order basins in Oregon and Washington in 2007 and 2008 to estimate detection and occupancy parameters for SAA and to develop basin-level density estimates for different species and genera. We estimated occupancy probabilities of 0.99 (95% CL = 0.96–1.00) for torrent and giant salamanders, 0.93 (95% CL = 0.76–0.92) for Dunn's salamanders (Plethodon dunni), and 0.60 (95% CL = 0.46–0.72) for tailed frogs. Our estimates can be compared with estimates for unmanaged third-order basins in Oregon and Washington to provide a relative measure of potential impacts of forest management on these taxa. In addition, our estimates provide baseline information with which to assess potential effects of future environmental changes on the 4 genera.     

Assessment of Swiss Needle Cast Disease: Temporal and Spatial Investigations of Fungal Colonization and Symptom Severity

Increasing severity of Swiss needle cast (SNC), a foliar disease of Douglas‐fir caused by the fungus Phaeocryptopus gaeumannii, has become a matter of concern in forest plantations throughout coastal Oregon and Washington. This study monitored SNC disease in three Oregon Douglas‐fir plantations bi‐annually in 1998–1999, and compared differences in fungal colonization and symptom development in trees from north‐ and south‐facing plots at each plantation. Fungal colonization as quantified by ergosterol content, pseudothecia density and quantitative PCR was significantly correlated with symptom severity (needle retention and needle cholorosis). All three measures of fungal colonization were highly correlated with each other; and only the ergosterol–pseudothecia relationship differed between plots, presumably due to the non‐species specific nature of ergosterol measurements. Differences in symptom severity and fungal colonization between north‐ and south‐aspect plots were consistent with climate differences. At low to moderate levels of infection, trees growing on warmer (i.e. south slopes in the western, and north slopes in the eastern Coast Range) slopes had higher levels of colonization, particularly during the winter months. Plots with southern exposures, which received greater amounts of solar radiation, had greater amounts of needle abscission compared to north‐aspect plots with similar amounts of fungal colonization. As a result, greater fungal abundance and symptom expression developed on south‐aspect slopes within the Oregon Coast Range.     

41 Incidence of paralytic shellfish toxin in bivalve mollusc tissue from the oregon coast

Saxitoxin and domoic acid sequestration by bivalve molluscs occurs periodically along the Oregon coast, presumably as a result of harmful algal blooms (HABs). Since 1958 and more continuously since 1979, the Oregon Shellfish Program (OSP) has assayed toxin levels in these molluscs as part of a monitoring program for paralytic (PSP) and amnesic (ASP) shellfish poisoning. We have created a working data base for all PSP sampling by the OSP between 1958 and 2001 and have examined the data for spatial and temporal trends in the appearance of toxin in shellfish, amount of toxin, and apparent duration of toxic events. In this report, we examine the data from the five stations with the longest record of continuous sampling (1979–2000) for evidence of correlation with El Niño events, upwelling, and/or a pattern of increasing frequency or intensity of toxic events. We also compare the pattern of appearance of toxin at open coast stations with the timing of first appearance of toxin in shellfish at adjacent estuarine stations. This is an important analysis because, in Oregon, shellfish closures due to PSP occur frequently in mussel beds on the open coast and the source of toxin‐producing organisms is unknown.     

Golden eagle use of winter roadkill and response to vehicles in the western United States

Vehicle collisions are a significant source of wildlife mortality worldwide, but less attention has been given to secondary mortality of roadkill scavengers, such as the golden eagle (Aquila chrysaetos). We sought to quantify golden eagle winter use of roadkill mammal carcasses and eagle flushing from vehicles in Oregon, Utah, and Wyoming, USA, as proxies for strike risk, using motion-sensitive cameras. We monitored 160 carcasses and captured 2,146 eagle–vehicle interactions at 58 carcasses (1–240 observations/carcass) during winters of 2016–2017, 2017–2018, and 2018–2019. We used generalized linear mixed models, which suggested that eagle use of carcasses declined with time since camera deployment but increased with distance to road. Flushing from vehicles decreased with carcass distance to road but was higher in the morning, in response to larger vehicles and vehicles in the closest lane, and in the Oregon study area. We suggest that roadkill distance to road is the easiest factor to manipulate with the dual benefits of increasing food availability to golden eagles and decreasing flush-related vehicle strike risk. We recommend that roadkill be moved at least 12 m from the road to increase eagle use and decrease flushing 4-fold relative to behavior observed at the road edge. Because flushing from roadkill is believed to be the primary cause of eagle–vehicle strikes, informed roadkill management has the potential to reduce human-caused mortality of golden eagles.     

Comparison of female attractiveness and male response among populations of Choristoneura rosaceana (Harris) in western and eastern U.S. apple orchards

Female obliquebanded leafrollers, Choristoneura rosaceana (Harris), collected from Oregon, Michigan, and New York were deployed in delta traps in Michigan apple orchards to compare their relative attractiveness to Michigan males of the same species. Females originating from Oregon attracted more males than females originating from New York during both generations of leafroller flight in Michigan. Also, females from Oregon attracted more males in Michigan than did "native" Michigan females during the first generation of flight. Analysis of gland extracts from the three populations revealed significantly more of each pheromone component in females originating from Oregon (approximately nine-fold more pheromone per female overall) than those from Michigan. However, there were no significant differences in the relative amounts of each pheromone component between Oregon and Michigan females. A 100:4:5:2 blend of Z11-14:OAc, E11-14:OAc, Z11-14:OH, and Z11-14:Ald was optimal for catching males in Michigan with no added or detrimental effect of Z11-14:Ald, confirming previous studies. However, 100:1 ratios of Z11-14:OAc relative to either E11-14:OAc or Z11-14:OH (also containing 2% Z11-14:Ald) captured more males in Oregon apple orchards compared with 100:4 and 100:10 ratios of Z11-14:OAc relative to either E11-14:OAc or Z11-14:OH. Addition of increasing amounts of Z11-14:Ald relative to Z11-14:OAc (range, 0-8:100) into a blend also containing 4% E11-14:OAc and 5% Z11-14:OH increased male catch in Oregon but not in Michigan. Our results suggest that pheromone blend quantity rather than blend quality may explain greater attractiveness of western compared with eastern female C. rosaceana to males in Michigan. Also, an optimized generic blend for monitoring male C. rosaceana across North America should contain Z11-14:Ald as has been previously shown, but should not exceed 4:100 ratios of both E11-14:OAc and Z11-14:OH relative to Z11-14:OAc for optimized catch of males in the western United States.     

Phytophthora species in forest streams in Oregon and Alaska

Eighteen Phytophthora species and one species of Halophytophthora were identified in 113 forest streams in Alaska, western Oregon and southwestern Oregon that were sampled by baiting or filtration of stream water with isolation on selective media. Species were identified by morphology and DNA characterization with single strand conformational polymorphism, COX spacer sequence and ITS sequence. ITS Clade 6 species were most abundant overall, but only four species, P. gonapodyides (37% of all isolates), P. taxon Salixsoil, P. taxon Oaksoil and P. pseudosyringae, were found in all three regions. The species assemblages were similar in the two Oregon regions, but P. taxon Pgchlamydo was absent in Alaska and one new species present in Alaska was absent in Oregon streams. The number of Phytophthora propagules in Oregon streams varied by season and in SW Oregon, where sampling continued year round, P. taxon Salixsoil, P. nemorosa and P. siskiyouensis were recovered only in some seasons.     

Meiosis and fertility of interspecific hybrids betweenPhaseolus vulgaris L. andP. acutifolius A. Gray

Summary Meiosis and fertility of interspecific hybrids obtained from reciprocal crosses between Phaseolus vulgaris and P. acutifolius were examined. Bivalents as well as univalents were found at Metaphase I. The majority of the microsporocytes had four or more univalents and the average was 6.3 univalents per cell. The average number of lagging chromosomes at Anaphase I was 2.3 per cell and the most frequent chromosome distribution at late Anaphase I was 10–12. The lower than expected number of lagging chromosomes as compared with the number of univalents at Metaphase I suggests the possible occurrence of precocious separation of bivalents. The male fertility as measured by pollen stainability was 17%, however, the frequency of pollen germination in selfing was 3.5%. Upon selfing of the interspecific hybrids, no dividing embryos were found even though 7 and 26% of the ovules were fertilized at 12 hours and four days after pollination. In backcrosses to P. vulgaris (male), 6 and 20% of the ovules were fertilized and 0 and 4% of the ovules contained dividing embryos at the same sampling times. When P. acutifolius was the male parent, respective values were 8 and 31% for fertilization and 0 and 13% for ovules with dividing embryos. The frequencies of backcross embryos recovered at 14–26 days were in agreement with the frequencies of dividing embryos at four days. The ability to obtain backcross plantlets demonstrates the feasibility to further utilize interspecific hybrids for the improvement of P. vulgaris Technical paper No. 5311 of the Oregon Agricultural Experiment Station. Research was supported by the Oregon Agricultural Experiment Station, the Science and Education Administration of the U.S. Department of Agriculture under Grant 5901-0410-8-0028-0 from the Competitive Research Grants Office, the Research Council of Oregon State University (NIH Biomedical Research Support Grant RR 07079) and the Processor Research Council of Oregon, A.R. and C T.S. are respectively supported by an African Graduate Fellowship from the African-American Institute and a fellowship from the National Science Council of the Republic of China     

Debating death: religion, politics, and the Oregon Death With Dignity Act

In 1994, Oregon passed the Oregon Death With Dignity Act, becoming the first state in the nation to allow physician-assisted suicide (PAS). This paper compares the public discussion that occurred in 1994 and during the Act's implementation in 1997 and examines these debates in relation to health care reform under the Obama administration. I argue that the 1994 and 1997 Oregon PAS campaigns and the ensuing public debate represent the culmination of a growing lack of deference to medical authority, concerns with the doctor-patient relationship, and a desire for increased patient autonomy over decisions during death. The public debate over PAS in Oregon underscored the conflicts among competing religious, political, and personal interests. More visible and widespread than any other American debate on PAS, the conflict in Oregon marked the beginning of the now nationwide problem of determining if and when a terminally ill person can choose to die.     

Diversity and succession of epiphytic macrolichen communities in low‐elevation managed conifer forests in Western Oregon

Abstract. We examined epiphytic macrolichen communities in Pseudotsuga menziesii (Douglas‐fir) forests across the western Oregon landscape for relationships to environmental gradients, stand age and structure, and commercial thinning. We used a retrospective, blocked design through the Coast and the western Cascade ranges of Oregon. Each of our 17 blocks consisted of a young, unthinned stand (age 50–110 yr); an adjacent, thinned stand of equivalent age; and an old‐growth stand (age > 200 yr). We found 110 epiphytic macrolichen taxa in the stands. Forage‐providing alectorioid lichens and the nitrogen‐fixing cyanolichen Lobaria oregana associated strongly with old‐growth stands and remnant old trees in younger stands (unthinned + thinned). Relative to unthinned stands, thinned stands had a slightly higher abundance of alectorioid lichens and a greater presence of Hypogymnia imshaugii. However, thinned stands hosted a lower landscape‐level (γ) diversity, lacking many species that occurred infrequently in the unthinned stands. Patterns in the lichen community composition correlated strongly with climatic gradients; the greatest variation in composition was between the Coast and Cascade ranges. The difference in communities between mountain ranges was greatest among stands 70–110 yr old, suggesting a difference in lichen successional dynamics between the ranges.     

Environmental correlates of species richness for native freshwater fish in Oregon, U.S.A.

Aim To better understand how environmental factors affect fish species richness across the state of Oregon. Location Oregon, U.S.A. Methods A database showing collection locations of 4911 fish specimens in the Oregon State University museum was modified by the Oregon Natural Heritage Program to include probable occurrences, and mapped within a grid of 375 hexagons that cover the state. The individual species maps of freshwater fish in Oregon were reviewed and revised by thirty regional fish biologists and then synthesized into a single map of native species richness. We used regression tree analysis (RTA) and multiple linear regression (MLR) to assess patterns of fish species richness with twenty environmental, three anthropogenic, and two historical variables. Results RTA explained 66% of the variation in native species richness, associating richness with annual air temperature range, minimum January temperature, introduced species richness, and stream density. MLR explained 68% of native species richness variation and associated richness with maximum July temperature, air temperature range, standard deviation of monthly temperature, stream density, introduced species richness, and basin connectivity. Main conclusions We conclude that for these data and at this scale, native fish species richness in Oregon is associated with annual climatic extremes, spatial variability of climate, stream density, basin connectivity, and introduced fishes.     

Transferring soils from high- to low-elevation forests increases nitrogen cycling rates: climate change implications

We assessed the potential impact of global warming resulting from a doubling of preindustrial atmospheric CO₂ on soil net N transformations by transferring intact soil cores (0–15 cm) from a high-elevation old-growth forest to a forest about 800 m lower in elevation in the central Oregon Cascade Mountains, USA. The lower elevation site had mean annual air and soil (10-cm mineral soil depth) temperatures about 2.4 and 3.9 °C higher than the high-elevation site, respectively. Annual rates of soil net N mineralization and nitrification more than doubled in soil transferred to the low-elevation site (17.2–36.0 kg N ha^–1 and 5.0–10.7 kg NO₃^––N ha^–1, respectively). Leaching of inorganic N from the surface soil (in the absence of plant uptake) also increased. The reciprocal treatment (transferring soil cores from the low- to the high-elevation site) resulted in decreases of about 70, 80, and 65% in annual rates of net N mineralization, nitrification, and inorganic N leaching, respectively. Laboratory incubations of soils under conditions of similar temperature and soil water potential suggest that the quality of soil organic matter is higher at the high-elevation site. Similar in situ rates of soil net N transformations between the two sites occurred because the lower temperature counteracts the effects of greater substrate quantity and quality at the high elevation site. Our results support the hypothesis that high-elevation, old-growth forest soils in the central Cascades have higher C and N storage than their low-elevation analogues primarily because low temperatures limit net C and N mineralization rates at higher elevations.     

Life history and ecological role of the xylophagous aquatic beetle, Lara avara LeConte (Dryopoidea: Elmidae)

SUMMARY.

• 1 This study documents the life history of the xylophagous elmid beetle, Lara avara, and estimates its contribution to wood degradation in Oregon streams. The life cycle was found to be 4 to 6 or more years long, with all but 2–3 months of that spent in the larval stage.
• 2 Larvae grow through seven instars, taking about 1 year for instars 1–3, and from 3 to 5 or more years for instars 4–7.
• 3 Last-instar larvae leave the water to pupate. Adults live approximately 3 weeks and occur from May to August. The eggs are deposited on submerged wood.
• 4 Larvae probably obtain their nutrition by absorbing substances liberated into decaying wood by microbial activity. They do not produce their own cellulase, nor do they have a symbiotic gut flora similar to that of xylophagous cranefly (Tipulidae) larvae.
• 5 Faecal production by L. avara larvae averaged 13% dry body wt d^-1. This yields an estimate of faecal production of 1.6 g m^-2 y^-1 in Oregon Coast Range streams (about 0.3% y^-1 of wood standing crop).

     

Habitat suitability and nest survival of white-headed woodpeckers in unburned forests of Oregon

We evaluated habitat suitability and nest survival of breeding white-headed woodpeckers (Picoides albolarvatus) in unburned forests of central Oregon, USA. Daily nest-survival rate was positively related to maximum daily temperature during the nest interval and to density of large-diameter trees surrounding the nest tree. We developed a niche-based habitat suitability model (partitioned Mahalanobis distance) for nesting white-headed woodpeckers using remotely sensed data. Along with low elevation, high density of large trees, and low slope, our habitat suitability model suggested that interspersion–juxtaposition of low- and high-canopy cover ponderosa pine (Pinus ponderosa) patches was important for nest-site suitability. Cross-validation suggested the model performed adequately for management planning at a scale >1 ha. Evaluation of mapped habitat suitability index (HSI) suggested that the maximum predictive gain (HSI = 0.36), where the number of nest locations are maximized in the smallest proportion of the modeled landscape, provided an objective initial threshold for identification of suitable habitat. However, managers can choose the threshold HSI most appropriate for their purposes (e.g., locating regions of low–moderate suitability that have potential for habitat restoration). Consequently, our habitat suitability model may be useful for managing dry coniferous forests for white-headed woodpeckers in central Oregon; however, model validation is necessary before our model could be applied to other locations. © 2011 The Wildlife Society.     

Genetic population structure of central Oregon Coast coho salmon (<Emphasis Type="Italic">Oncorhynchus kisutch</Emphasis>)

We surveyed microsatellite variation from 22 spawning populations of coho salmon (Oncorhynchus kisutch) from the Oregon Coast to help identify populations for conservation planning. All of our samples were temporally replicated, with most samples obtained in 2000 and 2001. We had three goals: (1) to confirm the status of populations identified on the basis of spawning location and life history; (2) to estimate effective population sizes and migration rates in order to determine demographic independence at different spatial scales; and (3) to determine if releases of Washington hatchery coho salmon in the 1980's into Oregon Coast streams resulted in measurable introgression into nearby wild Oregon Coast coho populations. For the last question, our study included a hatchery broodstock sample from 1985, after the Puget Sound introduction, and a 1975 sample taken from the same area prior to the introduction. Our results generally supported previously hypothesized population structure. Most importantly, we found unique lake-rearing groups identified on the basis of a common life-history type were genetically related. Estimates of immigrant fraction using several different methods also generally supported previously identified populations. Estimates of effective population size were highly correlated with estimates of spawning abundance. The 1985 hatchery sample was genetically similar to contemporary Washington samples, and the contemporary Oregon Coast samples were similar to the 1975 Oregon Coast sample, suggesting that introductions of Washington coho salmon did not result in large scale introgression into Oregon populations.     

Characterization of the Oregon isolate of Neospora hughesi from a horse

Neospora hughesi was isolated in cell cultures inoculated with homogenate of spinal cord from a horse in Oregon. Tachyzoites of this Oregon isolate of N. hughesi were maintained continuously by cell culture passage and tachyzoites were infective to immunosuppressed mice. Gamma interferon gene knockout (KO) mice injected with tachyzoites developed fatal myocarditis and numerous tachyzoites were seen in lesions. Gerbils (Meriones unguiculatus) inoculated with tachyzoites developed antibodies (> or = 1:500) as indicated by the Neospora caninum agglutination test but did not develop clinical signs, and Neospora organisms were not demonstrable in their tissues. Tissue cysts were not found in gerbils, nude mice, KO mice, immunosuppressed outbred Swiss Webster mice, or BALB/c mice injected with the Oregon isolate of N. hughesi. Ultrastructurally, tachyzoites of the Oregon isolate from the myocardium of infected KO mice and from cell culture were similar to N. caninum tachyzoites. Western blot analysis using NcSAG1 and NcSRS2 polyclonal and monoclonal antibodies and characterization of the internal transcribed spacer 1 sequences from the equine isolates and different isolates of N. caninum from dogs and cattle indicated that the Oregon isolate of N. hughesi is distinct from N. caninum isolates from cattle and dogs.     

Novel immuno-FRET assay method for Bacillus spores and Escherichia coli O157:H7

Novel immunofluorescence resonance energy transfer (immuno-FRET) assays for both Bacillus cereus spores and Escherichia coli O157:H7 are reported. Both assays involve the use of dual (QSY-7 and Oregon Green 514-antibody)-labeled spores or vegetative bacteria, such that Oregon Green 514-labeled antibodies are quenched by proximal QSY-7 molecules that are covalently bound to the dual (Oregon Green 514 and QSY-7)-labeled cells. Upon introduction of unlabeled bacteria or spores, in the respective assays, an increase in fluorescence is observed in proportion to the numbers of unlabeled cells. This is due to migration of Oregon Green 514-labeled antibody from the dual-labeled cells to the unlabeled target cells as verified by fluorescence microscopy. Optimization of the QSY-7 surface density led to a B. cereus spore detection sensitivity of approximately 1.0 x 10(5) to 2.5 x 10(5) spores per milliliter and 3.5 x 10(5) cells per milliliter for E. coli using a conventional cuvette-based spectrofluorometer.