THE GEOGRAPHY OF MITOCHONDRIAL DNA VARIATION,POPULATION STRUCTURE,HYBRIDIZATION, AND SPECIES LIMITS IN THE FOX SPARROW (PASSERELLA ILIACA)

Geographic variation in mitochondrial DNA (mtDNA) restriction sites was studied in the fox sparrow (Passerella iliaca). Seventy-eight haplotypes were found. Haplotypes fall into four phylogeographic groups that correspond to groups defined by plumage characters. The geographic distribution of these four groups does not appear congruent with mtDNA patterns in other vertebrates. Within each group, there is little geographic variation in mtDNA restriction sites, although there is geographic variation in plumage coloration and body size. The evolution of mtDNA diversity in fox sparrows seems best explained by vicariant events rather than isolation by distance. The mtDNA evidence suggests that Passerella megarhyncha and Passerella schistacea, two nonsister taxa that occur in western North America, have independently undergone bottlenecks. Hybridization is limited between all pairs of taxa except P. megarhyncha and P. schistacea, where mtDNA evidence suggests a narrow contact zone along the interface of the Great Basin and Sierra Nevada/Cascades. Morphometric characters intergrade over a broader area, suggesting that different processes are responsible for the two gradients. The occurrence of limited backcrossing among taxa suggests that cytoplasmic-nuclear incompatibility is lacking. The number of biological species would range from one to four, depending on the degree of hybridization tolerated. The mtDNA and plumage characters suggest four phylogenetic species: P. iliaca, P. megarhyncha, P. unalaschcensis, and P. schistacea.     

SONDERELLA, LEMBERGIA AND THE NEW TRIBE SONDERELLEAE (RHODOMELACEAE, RHODOPHYTA)

Padina is one of the most important genera in the coastal zone of the Gulf of California because of their biomass. Eight species have been recorded for the area: P. tetrastromatica , P. durvillaei , P. gymnospora , P. mexicana , P. caulencens , P. concrescens , P. crispata y P. vikeersiae based on taxonomic and floristic studies. Unfortunately, until today, a comparative study of all these species in a modern context was not available. Intensive surveys in 100 localities around the area yield more than 1000 specimes and 500 slides were analyzed and compared with relevant types. Taxonomic evaluations were developed using 16 characters commonly used in the literature. As a result of our analysis, only five characters can discriminate species. Based on character analysis and comparisons with proper type material, only three species can be recognized in the zone: P. concrencens , P. durvillaei and P. mexicana. In the case of P. crispata , we conclude that it is a heterotypic synonym for P. mexicna. But in the case of P. gymnospora, P. tetrastromatica and P. vikersiae , all previous records represent mis-identifications.     

A TAXONOMIC STUDY OF THE GENUS PADINA (DICTYOTALES,PHAEOPHYCEAE) INCLUDING THE DESCRIPTIONS OF FOUR NEW SPECIES FROM JAPAN,HAWAII, AND THE ANDAMAN SEA1

A taxonomic study of the genus Padina from Japan, Southeast Asia, and Hawaii based on morphology and gene sequence data (rbcL and cox3) resulted in the recognition of four new species, that is, Padina macrophylla and Padina ishigakiensis from Ryukyu Islands, Japan; Padina maroensis from Hawaii; and Padina usoehtunii from Myanmar and Thailand. All species are bistratose and morphologically different from one another as well as from any known taxa by a combination of characters relating to degree of calcification; the structure, position, and arrangement of hairlines (HLs) and reproductive sori; and the presence or absence of rhizoid‐like groups of hairs and an indusium. Molecular phylogenetic analyses demonstrated a close relationship between P. ishigakiensis, P. macrophylla, P. maroensis, and Padina australis Hauck. The position of P. usoehtunii, however, was not fully resolved, being either sister to a clade comprising the other three new species and P. australis in the rbcL tree or more closely related to a clade comprising several other recently described species in the cox3 tree. The finding of the four new species demonstrates high species diversity particularly in southern Japan. The following characters were first recognized here to be useful for species delimitation: the presence or absence of small rhizoid‐like groups of hairs on the thallus surface, structure and arrangement of HLs on both surfaces either alternate or irregular, and arrangement of the alternating HLs between both surfaces in equal or unequal distance. The evolutionary trajectory of these and six other morphological characters used in species delineation was traced on the phylogenetic tree.     

THE PROBABLE ORIGIN OF ORYZOPSIS CONTRACTA

Oryzopsis contracta is found only in the Big Hollow area of southern Wyoming where it exists sympatrically with the widely distributed species O. hymenoides and O. micrantha. The three species are probably reproductively isolated from each other. Oryzopsis contracta is very similar to O. hymenoides; however, they can be separated on several characters. It also resembles O. micrantha in several characters. This suggests that O. contracta may have evolved through hybridization between the other two species. A quantitative analysis shows that O. contracta occupies an intermediate and central position between the other two species with regard to most characters analyzed. Scatter diagrams reveal a correlated deviation of O. contracta individuals from O. hymenoides toward O. micrantha with respect to several characters. Meiosis in occasional sterile O. hymenoides × O. contracta hybrids shows multivalent associations, suggesting that an appreciable part of the presumed micrantha contribution to the contracta genome was in the form of relatively large chromosome segments. The data suggest that O. contracta evolved as a result of chromosomal translocations in a chance hybrid between O. hymenoides and O. micrantha followed by backcrossing to O. hymenoides and subsequent self-fertilization of the hybrid.     

MONOGRAPH OF THE GENUS PROTOSTELIUM

Three new species of Protostelium (Order Protostelida of the Mycetozoa) are described: P. irregularis, P. zonatura, and P. pyriformis, all with rather wide distribution and occurring on dead attached plant parts, less often in soil and humus. The latter two species differ from the first and from the other two known species, P. mycophaga Olive and Stoianovitch and P. arachisporum Olive, in the endogenous origin of the stalk. P. mycophaga var. crassipes, with vesicular stalk bases, is the third variety of that species to be described. A key to the genus is included.     

Pollen diversity in the genus Ptilostemon (Asteraceae,Cardueae) from Italy and its taxonomic and palynoecological implications

The results of a study on pollen morphology of the species of the genus Ptilostemon growing in Italy: Ptilostemon niveus, P. greuteri, P. gnaphaloides, P. casabonae, P. strictus, P. stellatus by light and scanning electron microscopy were presented and discussed including in relation to their taxonomic position. The exine shows two different ornamentation patterns: echinae and scabrae. This last ornamentation pattern together with other features was previously described in the genus Ptilostemon. Of 6 species analysed, P. stellatus is the only one that shows a scabrate ornamentation of exine. Two pollen types were recognized through the exine ornamentation, length of ectocolpus and polar outline: P. stellatus type and P. niveus type. A multivariate analysis (principal component analysis and linear discriminant analysis) was carried out with the aim of examining potential morphological characters which could be used to identify taxa. The data suggest that several characteristics can be used to delimit the species in particular the exine ornamentation. The results of our studies support the actually subgeneric classification, and several features of the pollen grains analysed seem to have a palynoecological role and an important taxonomic significance. A dichotomous key based on palynological data is also given.     

PSEUDOCODIUM MUCRONATUM,A NEW SPECIES FROM NEW CALEDONIA,AND AN ANALYSIS OF THE EVOLUTION OF CLIMATIC PREFERENCES IN THE GENUS (BRYOPSIDALES,CHLOROPHYTA)1

A new species, Pseudocodium mucronatum, is described from the Chesterfield platform off the west coast of New Caledonia. The species differs from its congeners in having mucronate utricules. A phylogenetic analysis of rbcL and tufA sequences showed that P. mucronatum is most closely associated with P. natalense De Clerck, Coppejans et Verbruggen and P. devriesii Weber Bosse, with which it shares compressed axes, depressed apices, and plastids in the utricles and the medullar siphons. We studied the evolution of climatic and ecological preferences in the genus using an interdisciplinary approach consisting of relaxed molecular clock analysis, extraction of macroecological data from satellite imagery in a geographic information system (GIS) framework, and ancestral character state estimation. It was shown that the genus originated in tropical waters during the Early Mesozoic. Whereas the P. floridanum‐okinawense lineage remained tropical, the lineage including P. natalense, P. devriesii, and P. mucronatum gradually invaded more temperate waters during Cenozoic times. Except for P. devriesii, which occurs in shallow and intertidal habitats, all Pseudocodium species grow in deep‐water habitats, and this ecological preference appears to be ancestral.     

A revision of Platybothrium Linton, 1890 (Tetraphyllidea: Onchobothriidae), with a phylogenetic analysis and comments on host-parasite associations

A revision of Platybothrium Linton, 1890 is presented, based on available type and voucher material, as well as extensive new collections from elasmobranchs belonging to the Carcharhinidae (requiem sharks) and Sphyrnidae (hammerhead sharks). All 10 nominal Platybothrium species are treated or redescribed herein. Four of these 10 nominal species, in addition to one former member of Dicranobothrium Euzet, 1953, are considered valid members of Platybothrium. Five new Platybothrium species are described: P. angelbahiense n. sp. ex Carcharhinus leucas, P. coshtaprum n. sp. ex C. plumbeus, P. jondoeorum n. sp. ex Negaprion acutidens and C. melanopterus, P. kirstenae n. sp. ex C. obscurus, and P. tantulum n. sp. ex Sphyrna lewini and S. zygaena. Sixty-three morphological characters were employed in cladistic analyses of nine Platybothrium species and five outgroup species. Coding and analysis strategies were varied to assess the effects of coding inapplicable characters as missing or as a separate character state, and of excluding characters for which data are missing in more than 10% of the taxa. The analysis in which inapplicable characters were coded as a separate character state and no characters were excluded produced the best-supported and most conservative estimate of the interrelationships of Platybothrium spp. Platybothrium appears to be a monophyletic assemblage, with the most basal species being P. spinulifera Southwell, 1912. The group of species possessing an accessory piece between the hooks forms a clade within the genus. Species lacking an accessory piece, which had previously been placed in Dicranobothrium Euzet, 1953, do not appear to be each other's closest relatives; thus, Dicranobothrium is considered a synonym of Platybothrium. An examination of host associations indicated that Platybothrium species are broadly distributed among, and entirely restricted to, carcharhinid and sphyrnid shark species. Most Platybothrium species exhibit oioxenous host-specificity, with all but two species each parasitising only a single host species. In several host species, multiple Platybothrium congeners parasitise the same host individual, a phenomenon not previously reported for Platybothrium.     

QUANTITATIVE GENETICS OF MORPHOLOGICAL DIFFERENTIATION IN PEROMYSCUS. I. TESTS OF THE HOMOGENEITY OF GENETIC COVARIANCE STRUCTURE AMONG SPECIES AND SUBSPECIES

Phenotypic and additive genetic covariance matrices were estimated for 15 morphometric characters in three species and subspecies of Peromyscus. Univariate and multivariate ANOVAs indicate these groups are highly diverged in all characters, P. leucopus having the largest body size, P. maniculatus bairdii the smallest, and P. maniculatus nebrascensis being intermediate. Comparing the structure of P and G within each taxon revealed significant similarities in all three cases. This proportionality was strong enough to justify using P in the place of G to analyze evolutionary processes using quantitative genetic models when G can not be estimated, as in fossil material. However, the similarity between genetic and phenotypic covariance structures is sufficiently low that estimates of the genetic parameters should be used when possible. The additive genetic covariance matrices were compared to examine the assumption that they remain constant during evolution, an assumption which underlies many applications of quantitative-genetic models. While matrix permutation tests indicated statistically significant proportionality between the genetic covariance structures of the two P. maniculatus subspecies, there is no evidence of significant genetic structural similarity between species. This result suggests that the assumption of constant genetic covariance structure may be valid only within species. (It does not, however, necessarily imply a causal relationship between speciation and heterogeneity of genetic covariance structures.) The low matrix correlation for the two P. maniculatus subspecies' genetic covariance matrices indicates G may not be functionally constant, even within species. The lack of similarity observed here may be due partly to sampling variation.     

MITOCHONDRIAL DNA VARIATION WITHIN AND BETWEEN SPECIES OF THE PAPILIO MACHAON GROUP OF SWALLOWTAIL BUTTERFLIES

Species limits and phylogenetic relationships in the Papilio machaon species group are potentially confounded by a complex pattern of Pleistocene range fragmentation, hybridization, and ecological race formation. Mitochondrial DNA (mtDNA) restriction-site analysis has been used to define genetic affinities and genetic population structure within this species group. The distribution of mtDNA haplotypes generally confirms prior phylogenetic hypotheses and species delineations, but there is poor correspondence between ecological races and mtDNA haplotypes. The amount and distribution of mtDNA sequence variation within species vary among species, reflecting differences in current patterns of gene flow and/or historical population structure. In spite of wing pattern characters that ally them with P. polyxenes, both P. joanae and P. brevicauda have mtDNA that is closely related to that of P. machaon. We suggest that P. joanae and P. brevicauda are of hybrid origin.     

A QUANTITATIVE STUDY OF VARIATION IN THE CHENOPODIUM ATROVIRENS-DESICCATUM-PRATERICOLA COMPLEX

Multivariate analyses were applied to 96 populations (OTUs) of plants, traditionally referred to Chenopodium atrovirens, C. desiccatum, and C. pratericola, in an attempt to evaluate the numerous and often contradictory taxonomic treatments of plants in this complex. The study consisted of two major parts. The first involved the use of cluster and principal components analyses using 14 morphological characters on the entire set of 96 OTUs to search for phenetically distinct groupings; these analyses were conducted without knowledge of traditional taxonomic designations of individual OTUs. Three reasonably well-defined groups emerged from these preliminary analyses. When traditional taxonomic designations were applied to member OTUs of each group, one group was composed primarily of C. atrovirens, another of C. pratericola and the third of C. desiccatum. The second part of the study utilized canonical analysis to: 1) confirm the integrity of the phenetic groups, 2) to classify OTUs difficult to identify to species using traditional methods, and 3) to provide an evaluation of characters important in the separation of these groups. This analysis confirmed the integrity of the groups and provided a classification to species of nearly all of the otherwise difficult OTUs. In addition, canonical analysis demonstrated that a combination of characters was important in the separation of the phenetic groups.     

LOW MOLECULAR WEIGHT CARBOHYDRATES OF THE BANGIOPHYCIDAE (RHODOPHYTA)1

In the order Porphyridiales there are three clades based on molecular evidence. These show parallels with the low molecular weight carbohydrate (LMWCs) in different genera. Clade Porphyridiales 1 includes Dixoniella, Glaucosphaera, Rhodella, and one undescribed genus (3987) that all contain mannitol. Clade Porphyridiales 2 comprises taxa of the Stylonematales Rhodosorus and Stylonema species and contains digeneaside and sorbitol, whereas Chroodactylon has only sorbitol. In clade Porphyridiales 3 Flintiella, Porphyridium, and the undescribed genus (3797) all possess only floridoside. In the Erythropeltidales Rhodochaete contains floridoside and digeneaside, Erythrotrichia species contain only floridoside, Sahlingia subintegra has floridoside and traces of D‐floridoside, and Smithora has L‐isofloridoside plus floridoside. In the Compsopogonales Boldia and Compsopogon have only floridoside. Within these genera as presently circumscribed, the LMWCs appear to be a reliable character to supplement the usual cytological characters.     

Antifouling Potential of Some Marine Organisms from India Against Species of Bacillus and Pseudomonas

Crude methanolic extracts of 37 marine organisms (16 species of flora, 21 species of fauna) were screened for antibacterial properties against 5 strains of bacteria isolated from marine environments. Of these, 10 plant and 9 animal extracts exhibited antibacterial activity against at least one bacterial strain. The extracts of 6 species were active against all the strains: i.e., Stoechospermum marginatum (brown algae), Cymodocea rotundata (seagrass), Petrosia sp. and Psammaplysilla purpurea (sponges), Sinularia compressa (soft coral), and Cassiopeia sp. (jellyfish). Among the plants, Padina tetrastromatica (brown algae) extract exhibited significant activity (9–11-mm inhibition zone at 500 μg per 6-mm disc) against Bacillus pumilus and Pseudomonas vesicularis, while the extracts of Petrosia, Psammaplysilla, and Cassiopeia were strongly active (11–13-mm inhibition zone at 500 μg per 6-mm disc) against B. circulans and P. putida. It was further confirmed that the attachment of bacterial strains on glass slides was inhibited remarkably with increasing concentrations of bioextracts of Petrosia sp. and Psammaplysilla purpurea. The present findings could form the basis for exploring the antibacterial potential of bioactive molecules from some of the marine organisms that exhibited moderate to strong antibacterial properties.     

SIMILARITIES IN THE ASEXUAL REPRODUCTION OF THE OCEANIC DINOFLAGELLATES, PYROCYSTIS FUSIFORMIS, PYROCYSTIS LUNULA, AND PYROCYSTIS NOCTILUCA1

Three cultured species of Pyrocystis (Dinoccoccales) reproduced asexually by forming 2 (or 1) aplanospores or zoospores inside the parent cell wall. In all 3 species these small reproductive cells, although they may not resemble the parent cells, swell up rapidly (～ 10 min) to the approximate size and shape of the parent cell. These swollen cells become new vegetative cells. The above asexual process is the only way by which cells numbers increase in our cultures. Pyrocystis lunula was propagated at the lunula stage of the life cycle. The nonmotile crescent-shaped cells produced reproductive cells that were Gymnodinium-shaped and had, in some cases, a trailing flagellum. With P. fusiformis and P. noctiluca, the reproductive cells were not flagellated. With P. fusiformis, these bodies had a pronounced equatorial constriction like a girdle, while in P. noctiluca the “girdle” was an inconspicuous feature if present. With P. noctiluca and P. fusiformis on a 12:12 ld cycle, reproductive cells were formed early in the dark period and they swelled up at the beginning of the light period. Reproduction of P. lunula was not well phased in our experiments, with reproductive cells developing at the end of the light period and the end of the dark period.     

喀斯特高寒干旱区不同经济树种的碳氮磷钾生态化学计量特征

探讨喀斯特高寒干旱区不同经济树种碳(C)、氮(N)、磷(P)、钾(K)含量及生态化学计量特征,丰富对"内稳态理论"、"生长速率理论"和生态系统养分限制状况的理解,为改善喀斯特生态环境提供理论支撑。本文以毕节市七星关区撒拉溪示范区的刺梨(Rosa roxburghii)、核桃(Juglans regia)2种主要经济树种作为研究对象,分析比较不同经济树种的养分含量特征、生态化学计量特征以及"叶片-凋落物-土壤"C、N、P含量和计量比之间的关系。结果表明:(1)2种经济树种不同组分中,核桃叶片有机C含量最高(均值为436.73 mg/g),刺梨叶片全N、全P含量最大(均值为20.77、2.10 mg/g),全K含量则为核桃根区土壤中最丰富(均值为17.07 mg/g)。核桃根区土壤速效K含量高于刺梨,表明核桃具有较好的耐旱性。(2)刺梨N再吸收率(19.23%)显著高于核桃N再吸收率(4.05%),表明与核桃相比,刺梨根区土壤N元素匮乏。(3)生态化学计量特征总体呈现出凋落物叶片根区土壤的规律。刺梨叶片N∶P低于14,说明刺梨生长时主要受N限制。刺梨叶片C∶P、N∶P低于核桃,推测栽种年限相同时,刺梨树种生长速率高于核桃树种。凋落物N∶P表现为核桃刺梨,故核桃凋落物能保留更多养分。核桃根区土壤C∶N高于刺梨,说明核桃地保肥能力较好。(4)根区土壤全P与叶片全P呈极显著正相关,说明植物叶片中P主要来源于土壤。根区土壤全N与凋落物C∶N呈极显著正相关,可见根区土壤中N含量与凋落物分解密切相关。     

STOICHIOMETRIC RESPONSES OF PHYTOPLANKTON SPECIES TO THE INTERACTIVE EFFECT OF NUTRIENT SUPPLY RATIOS AND GROWTH RATES1

Three species of phytoplankton, Rhodomonas sp., Phaeodactylum tricornutum Bohlin, and Isochrysis galbana Parke, were cultivated in semicontinuous culture to analyze the response of carbon (C):nitrogen (N):phosphorus (P) stoichiometry to the interactive effect of five N:P supply ratios and four growth rates (dilution rates). The relationship between cellular N and P quotas and growth rates fits well to both the Droop and Ågren’s functions for all species. We observed excess uptake of both N and P in the three species. N:P biomass ratios showed a significant positive relationship with N:P supply ratios across the entire range of growth rates, and N:P biomass ratios converged to an intermediate value independent of N:P supply ratios at higher growth rates. The effect of growth rates on N:P biomass ratios was positive at lower N:P supply ratios, but negative at higher N:P supply ratios for both Rhodomonas sp. and I. galbana, while for P. tricornutum this effect was negative at all N:P supply ratios. A significant interactive effect of N:P supply ratios and growth rates on N:P biomass ratios was found in both Rhodomonas sp. and P. tricornutum, but not in I. galbana. Our results suggest that Ågren’s functions may explain the underlying biochemical principle for the Droop model. The parameters in the Droop and Ågren’s functions can be useful indications of algal succession in the phytoplankton community in changing oceans.     

Seasonal dynamics of fish assemblage structures in a surf zone on an exposed sandy beach in Japan

Seasonal dynamics in fish assemblage structure, comprising postlarval to early adult stages, in the surf zone on an exposed sandy beach on the Kashimanada coast were studied over a 2-year period. A total of 32 species and two higher group taxa were found. In terms of abundance, Salangichthys ishikawae, Mugil cephalus cephalus, Plecoglossus altivelis altivelis, and Engraulis japonicus were the four most dominant species. The results of cluster analysis and canonical correspondence analysis using 12 dominant species in terms of abundance revealed that water temperature and wind factor (wind speed × wind direction) had significant independent associations on species occurrence patterns for 11 species; that is, occurrence of 11 species was significantly related to water temperature and occurrence of 7 species was related to wind factor. Two species (S. ishikawae and P. altivelis altivelis) showed clear monthly increases in size, consequently suggesting their use of the surf zone as a nursery area. In contrast, M. cephalus cephalus and E. japonicus showed few increases in standard length, indicating their use of the surf zone only in their postlarval and/or juvenile stage. It is suggested that numerous fish species use the surf zone as shelter and/or a nursery area, even in the harsh conditions of an exposed sandy beach with great wave action.     

Toxic Pseudo-nitzschia multistriata (Bacillariophyceae) from the Gulf of Naples: morphology,toxin analysis and phylogenetic relationships with other Pseudo-nitzschia species

The genus Pseudo-nitzschia includes several species capable of producing domoic acid, the causative agent of Amnesic Shellfish Poisoning. Some of these species have been recorded frequently in the Gulf of Naples. For one of the species, P. multistriata, which has been recurrently found in our sampling area since 1995, this is the first report for European waters. Here we provide further details on the fine structure of this species. Pseudo-nitzschia multistriata was the only one found to produce domoic acid among all the Pseudo-nitzschia species from the Gulf of Naples, and this finding raises the number of potentially toxic species in this genus to nine. Phylogenetic relationships among several Pseudo-nitzschia species were assessed using the hypervariable domains (D1–D3) of the large subunit (LSU) rDNA. The match between the phylogeny obtained and important taxonomic characters used in this genus are discussed. Results show that P. multistriata clusters with wider species lacking a central larger interspace in the raphe. Close genetic relationships were determined between P. fraudulenta and P. subfraudulenta, and between P. pungens and P. multiseries. Genetic differences among these pairs of species are comparable to those among isolates of P. pseudodelicatissima from the Gulf of Naples, indicating high intraspecific genetic diversity of Pseudo-nitzschia species in the relatively conserved LSU region. This could explain the problematic results obtained when testing a match between species-specific Pseudo-nitzschia LSU probes and our sequences.