WRKY转录因子参与植物抗盐性调控的研究进展

盐胁迫是影响植物生长发育重要的环境因子之一,为了适应及抵御盐胁迫危害的逆境,作物自身会通过一系列变化来适应环境而作出相关性应激性改变,如宏观形态学、生理学改变、微观分子生物学变化等。转录调控是细胞内部调控网络中最重要的一个环节,WRKY转录因子响应并参与多种植物的生物和非生物胁迫。本综述从盐胁迫下作物形态结构的变化、盐胁迫对作物生理代谢的影响以及WRKY转录因子参与作物抗盐调控网络等方面文献,来汇总分析近年来拟南芥、水稻及其他种类植物应对胁迫的响应机制以及WRKY转录因子的功能,为提高园艺作物抗盐性生理作用及分子机制提供帮助,同时为作物抗盐栽培提供新思路。     

植物响应非生物胁迫的磷酸化修饰组学研究进展

植物具有固着生活的特点,高温、低温、干旱和盐等生境中常见的非生物胁迫会严重影响植物的生长发育。蛋白质磷酸化是植物应对非生物胁迫的重要机制,主要通过蛋白质的磷酸化和去磷酸化修饰来调控植物细胞对外界胁迫的应激反应,在植物细胞快速传递胁迫信号并激活对胁迫环境的形态、生理和分子水平适应机制的过程中起重要作用。该文主要介绍了植物磷酸化蛋白质的富集、检测和鉴定技术,并对近年来国内外有关植物响应高温、低温、干旱、淹水、盐、养分亏缺和元素毒害等非生物胁迫的磷酸化修饰蛋白组学研究进展进行综述。     

植物干旱胁迫响应机制研究进展——从表型到分子

干旱胁迫是抑制植物生长发育的主要限制因子之一,植物为适应干旱的外界环境,会依据自身的习性启动响应机制。从植物外部形态、生理代谢、生化过程、细胞及分子水平的变化阐述了植物对干旱胁迫的响应机制,详细阐述了生理及分子水平的响应机制,并对分子和遗传水平的响应机制和植物抗旱性关系的未来研究方向提出了展望,以期为植物抗逆性及遗传育种研究提供参考。     

植物响应联合胁迫机制的研究进展

自然界中, 植物通常面对多重联合胁迫。在全球气候变化日益加剧的背景下, 多重联合胁迫对植物生长发育及作物产量形成的不利影响日益显著。阐明植物响应和适应联合胁迫的生理与分子机制, 对人们理解植物对自然环境的适应机理, 及培育耐受联合胁迫的新品种有重要意义。研究表明, 植物响应联合胁迫的机制是特异的, 不能简单地从单一胁迫响应叠加来推断。植物遭受联合胁迫时, 各种生理、代谢和信号途径相互作用, 使得植物响应联合胁迫非常复杂。该文综述了植物响应联合胁迫的生理与分子机理的最新进展, 并阐述了植物响应联合胁迫的研究方法。     

植物应对干旱胁迫的阶段性策略

干旱是影响植物生存、生长和分布的最重要的非生物胁迫之一,全球暖干化将加剧干旱胁迫.植物对干旱胁迫的响应和适应机制一直是
学术研究的热点领域.本文综述了植物应对干旱胁迫的生长和生理响应,在已有的研究结果基础上,提出了植物应对干旱胁迫的阶段性响应策略.从干旱开始到干旱致死,植物经历了干旱开始-轻度干旱-中度干旱-严重干旱-极端干旱5个阶段,分别对应着应激响应-主动适应-被动适应3种响应方式和适应机制.不同阶段中植物抗旱机制的核心任务不同.最后提出了研究植物阶段性响应策略需要解决的关键科学问题及研究方向.     

植物响应联合胁迫机制的研究进展

自然界中, 植物通常面对多重联合胁迫。在全球气候变化日益加剧的背景下, 多重联合胁迫对植物生长发育及作物产量形成的不利影响日益显著。阐明植物响应和适应联合胁迫的生理与分子机制, 对人们理解植物对自然环境的适应机理, 及培育耐受联合胁迫的新品种有重要意义。研究表明, 植物响应联合胁迫的机制是特异的, 不能简单地从单一胁迫响应叠加来推断。植物遭受联合胁迫时, 各种生理、代谢和信号途径相互作用, 使得植物响应联合胁迫非常复杂。该文综述了植物响应联合胁迫的生理与分子机理的最新进展, 并阐述了植物响应联合胁迫的研究方法。     

海洋微藻响应重金属复合胁迫的生理生态学机制

重金属污染物进入海洋环境会破坏海洋生态系统的结构和功能。海洋微藻构成了海洋食物链的基础, 是海洋生态系统主要的初级生产者。重金属复合胁迫对海洋微藻产生毒性效应, 会阻碍藻细胞分裂、破坏DNA结构、抑制光合作用、减少细胞色素合成、导致藻细胞畸变以及改变浮游植物种类组成等。海洋微藻在长期种系进化或个体发育过程中, 形成了一系列响应重金属复合胁迫的特殊生理生态机制。它们可以利用由酶类和非酶类组成的抗逆保护系统, 减轻重金属复合胁迫导致的生物毒害作用; 还可以通过调节金属硫蛋白(Metallothionein, MT)等相关蛋白基因表达以维持正常的生理功能。探究海洋微藻响应重金属复合胁迫的生理生态学机制, 有利于为海洋重金属污染的生物修复提供依据, 具有重要的理论与现实意义。     

植物逆境驯化作用的生理与分子机制研究进展

植物在生长发育过程中要面对各种生物和非生物胁迫,目前对于植物应对胁迫的研究较为充分。在自然界中,各种逆境胁迫因子对植物的影响更多的是渐变的,逐渐积累的,在此过程中植物会通过驯化的方式适应这种形式的胁迫。尽管有关驯化作用提高植物耐逆性的研究有些报道,但其生理与分子机制现在还不十分清楚。本文主要介绍了植物应对病虫,冷,热,高盐4种环境因子的驯化过程的研究进展,同时总结了驯化过程的生理与分子机制,包括非激活状态的信号分子的积累以及表观遗传学修饰等。     

植物蛋白磷酸酶2C在非生物胁迫信号通路中的调控作用

植物在非生物胁迫下会产生一系列的形态、生理生化和分子水平上的适应性变化,尤其是非生物胁迫会引起植物体内的蛋白磷酸酶2C(PP2C)基因表达的改变,从而诱导植物合成相关的蛋白以适应胁迫。植物中有不同类型的PP2C亚群,各种PP2C亚群能够通过不同的信号途径参与胁迫应答,因此在植物响应非生物胁迫的过程中发挥重要作用。综述了植物PP2C在非生物胁迫信号通路中的作用机制。     

茉莉酸调控植物生长发育和胁迫的研究进展

植物作为不可移动的生物，感知外界刺激通过改变自身信号转导对其做出反应。植物激素作为重要的信号分子，在植物应对不同生物和非生物胁迫反应中发挥作用，以调节植物生长发育并适应不断变化的环境。茉莉酸是植物体内的重要激素之一，目前它的合成途径、生理作用等已有大量研究，但对其感知环境变化并做出反应的信号转导途径以及与其他植物激素的相互作用方面的研究还有空白之处。本文主要阐述茉莉酸在调控植物生长发育、胁迫应答及其与其他植物激素的相互作用方面的研究进展。     

Comparative molecular population genetics of phycoerythrin locus in <Emphasis Type="Italic">Prochlorococcus</Emphasis>

As the only remainder type of phycobiliproteins in Prochlorococcus, the actual role of phycoerythrin still remains unknown. Previous studies revealed that two different forms of phycoerythrin gene were found in two ecotypes of Prochlorococcus that are specifically adapted to either high light (HL) or low light (LL) conditions. Here we analyze patterns of phycoerythrin nucleotide variation in the HL- and LL-Prochlorococcus populations. Our analyses reveal a significantly greater number of non-synonymous fixed substitutions in peB and peA than expected based on interspecific comparisons. This pattern of excess non-synonymous fixed substitutions is not seen in other five phycoerythrin-related genes (peZ/V/Y/T/S). Several neutrality statistical tests indicate an excess of rare frequency polymorphisms in the LL-Prochlorococcus data, but an excess of intermediate frequency polymorphisms in the HL-Prochlorococcus data. Distributions of the positively selected sites identified using the likelihood ratio test, when mapped onto the phycoerythrin tertiary structure, reveal that HL- and LL-phycoerythrin should be under different selective patterns. These findings may provide insights into the likely role of selection at the phycoerythrin locus and motivate further research to unveil the function of phycoerythrin in Prochlorococcus.     

Short RNA half-lives in the slow-growing marine cyanobacterium Prochlorococcus

Background  

RNA turnover plays an important role in the gene regulation of microorganisms and influences their speed of acclimation to environmental changes. We investigated whole-genome RNA stability of Prochlorococcus, a relatively slow-growing marine cyanobacterium doubling approximately once a day, which is extremely abundant in the oceans.     

Non-coding RNAs in marine Synechococcus and their regulation under environmentally relevant stress conditions

Regulatory small RNAs (sRNAs) have crucial roles in the adaptive responses of bacteria to changes in the environment. Thus far, potential regulatory RNAs have been studied mainly in marine picocyanobacteria in genetically intractable Prochlorococcus, rendering their molecular analysis difficult. Synechococcus sp. WH7803 is a model cyanobacterium, representative of the picocyanobacteria from the mesotrophic areas of the ocean. Similar to the closely related Prochlorococcus it possesses a relatively streamlined genome and a small number of genes, but is genetically tractable. Here, a comparative genome analysis was performed for this and four additional marine Synechococcus to identify the suite of possible sRNAs and other RNA elements. Based on the prediction and on complementary microarray profiling, we have identified several known as well as 32 novel sRNAs. Some sRNAs overlap adjacent coding regions, for instance for the central photosynthetic gene psbA. Several of these novel sRNAs responded specifically to environmentally relevant stress conditions. Among them are six sRNAs changing their accumulation level under cold stress, six responding to high light and two to iron limitation. Target predictions suggested genes encoding components of the light-harvesting apparatus as targets of sRNAs originating from genomic islands and that one of the iron-regulated sRNAs might be a functional homolog of RyhB. These data suggest that marine Synechococcus mount adaptive responses to these different stresses involving regulatory sRNAs.     

Patterns of ecological specialization among microbial populations in the Red Sea and diverse oligotrophic marine environments

Large swaths of the nutrient‐poor surface ocean are dominated numerically by cyanobacteria (Prochlorococcus), cyanobacterial viruses (cyanophage), and alphaproteobacteria (SAR11). How these groups thrive in the diverse physicochemical environments of different oceanic regions remains poorly understood. Comparative metagenomics can reveal adaptive responses linked to ecosystem‐specific selective pressures. The Red Sea is well‐suited for studying adaptation of pelagic‐microbes, with salinities, temperatures, and light levels at the extreme end for the surface ocean, and low nutrient concentrations, yet no metagenomic studies have been done there. The Red Sea (high salinity, high light, low N and P) compares favorably with the Mediterranean Sea (high salinity, low P), Sargasso Sea (low P), and North Pacific Subtropical Gyre (high light, low N). We quantified the relative abundance of genetic functions among Prochlorococcus, cyanophage, and SAR11 from these four regions. Gene frequencies indicate selection for phosphorus acquisition (Mediterranean/Sargasso), DNA repair and high‐light responses (Red Sea/Pacific Prochlorococcus), and osmolyte C1 oxidation (Red Sea/Mediterranean SAR11). The unexpected connection between salinity‐dependent osmolyte production and SAR11 C1 metabolism represents a potentially major coevolutionary adaptation and biogeochemical flux. Among Prochlorococcus and cyanophage, genes enriched in specific environments had ecotype distributions similar to nonenriched genes, suggesting that inter‐ecotype gene transfer is not a major source of environment‐specific adaptation. Clustering of metagenomes using gene frequencies shows similarities in populations (Red Sea with Pacific, Mediterranean with Sargasso) that belie their geographic distances. Taken together, the genetic functions enriched in specific environments indicate competitive strategies for maintaining carrying capacity in the face of physical stressors and low nutrient availability.     

Prochlorococcus extracellular vesicles: molecular composition and adsorption to diverse microbes

Extracellular vesicles are small (~50–200 nm diameter) membrane-bound structures released by cells from all domains of life. While vesicles are abundant in the oceans, their functions, both for cells themselves and the emergent ecosystem, remain a mystery. To better characterize these particles – a prerequisite for determining function – we analysed the lipid, protein, and metabolite content of vesicles produced by the marine cyanobacterium Prochlorococcus. We show that Prochlorococcus exports a diverse array of cellular compounds into the surrounding seawater enclosed within discrete vesicles. Vesicles produced by two different strains contain some materials in common, but also display numerous strain-specific differences, reflecting functional complexity within vesicle populations. The vesicles contain active enzymes, indicating that they can mediate extracellular biogeochemical reactions in the ocean. We further demonstrate that vesicles from Prochlorococcus and other bacteria associate with diverse microbes including the most abundant marine bacterium, Pelagibacter. Together, our data point toward hypotheses concerning the functional roles of vesicles in marine ecosystems including, but not limited to, possibly mediating energy and nutrient transfers, catalysing extracellular biochemical reactions, and mitigating toxicity of reactive oxygen species.     

How Prochlorococcus bacteria use nitrogen sparingly in their proteins

Organisms use proteins to perform an enormous range of functions that are essential for life. Proteins are usually composed of 20 different kinds of amino acids that each contain between one and four nitrogen atoms. In aggregate, the nitrogen atoms that are bound in proteins typically account for a substantial fraction of the nitrogen in a cell. Many organisms obtain the nitrogen that they use to make proteins from the environment, where its availability can vary greatly. These observations prompt the question: can environmental nitrogen scarcity lead to adaptive evolution in the nitrogen content of proteins? In this issue, Gilbert & Fagan (2011) address this question in the marine cyanobacteria Prochlorococcus, examining a variety of ways in which cells might be thrifty with nitrogen when making proteins. They show that different Prochlorococcus strains vary substantially in the average nitrogen content of their encoded proteins and relate this variation to nitrogen availability in different marine habitats and to genomic base composition (GC content). They also consider biases in the nitrogen content of different kinds of proteins. In most Prochlorococcus strains, a group of proteins that are commonly induced during nitrogen stress are poor in nitrogen relative to other proteins, probably reflecting selection for reduced nitrogen content. In contrast, ribosomal proteins are nitrogen rich relative to other Prochlorococcus proteins, and tend to be down‐regulated during nitrogen limitation. This suggests the possibility that decaying ribosomal proteins act as a source of nitrogen‐rich amino acids during periods of nitrogen stress. This work contributes to our understanding of how nutrient limitation might lead to adaptive variation in the composition of proteins and signals that marine microbes hold great promise for testing hypotheses about protein elemental costs in the future.     

Genotoxic damage in polychaetes: A study of species and cell-type sensitivities

The marine environment is becoming increasingly contaminated by environmental pollutants with the potential to damage DNA, with marine sediments acting as a sink for many of these contaminants. Understanding genotoxic responses in sediment-dwelling marine organisms, such as polychaetes, is therefore of increasing importance. This study is an exploration of species-specific and cell-specific differences in cell sensitivities to DNA-damaging agents in polychaete worms, aimed at increasing fundamental knowledge of their responses to genotoxic damage. The sensitivities of coelomocytes from three polychaetes species of high ecological relevance, i.e. the lugworm Arenicola marina, the harbour ragworm Nereis diversicolor and the king ragworm Nereis virens to genotoxic damage are compared, and differences in sensitivities of their different coelomic cell types determined by use of the comet assay. A. marina was found to be the most sensitive to genotoxic damage induced by the direct-acting mutagen methyl methanesulfonate (MMS), and showed dose-dependent responses to MMS and the polycyclic aromatic hydrocarbon benzo(a)pyrene. Significant differences in sensitivity were also measured for the different types of coelomocyte. Eleocytes were more sensitive to induction of DNA damage than amoebocytes in both N. virens and N. diversicolor. Spermatozoa from A. marina showed significant DNA damage following in vitro exposure to MMS, but were less sensitive to DNA damage than coelomocytes. This investigation has clearly demonstrated that different cell types within the same species and different species within the polychaetes show significantly different responses to genotoxic insult. These findings are discussed in terms of the relationship between cell function and sensitivity and their implications for the use of polychaetes in environmental genotoxicity studies.     

Ecological Genomics of Marine Picocyanobacteria

Summary: Marine picocyanobacteria of the genera Prochlorococcus and Synechococcus numerically dominate the picophytoplankton of the world ocean, making a key contribution to global primary production. Prochlorococcus was isolated around 20 years ago and is probably the most abundant photosynthetic organism on Earth. The genus comprises specific ecotypes which are phylogenetically distinct and differ markedly in their photophysiology, allowing growth over a broad range of light and nutrient conditions within the 45°N to 40°S latitudinal belt that they occupy. Synechococcus and Prochlorococcus are closely related, together forming a discrete picophytoplankton clade, but are distinguishable by their possession of dissimilar light-harvesting apparatuses and differences in cell size and elemental composition. Synechococcus strains have a ubiquitous oceanic distribution compared to that of Prochlorococcus strains and are characterized by phylogenetically discrete lineages with a wide range of pigmentation. In this review, we put our current knowledge of marine picocyanobacterial genomics into an environmental context and present previously unpublished genomic information arising from extensive genomic comparisons in order to provide insights into the adaptations of these marine microbes to their environment and how they are reflected at the genomic level.     

Establishing the phylogeny of Prochlorococcus with a new alignment‐free method

Prochlorococcus marinus, one of the most abundant marine cyanobacteria in the global ocean, is classified into low‐light (LL) and high‐light (HL) adapted ecotypes. These two adapted ecotypes differ in their ecophysiological characteristics, especially whether adapted for growth at high‐light or low‐light intensities. However, some evolutionary relationships of Prochlorococcus phylogeny remain to be resolved, such as whether the strains SS120 and MIT9211 form a monophyletic group. We use the Natural Vector (NV) method to represent the sequence in order to identify the phylogeny of the Prochlorococcus. The natural vector method is alignment free without any model assumptions. This study added the covariances of amino acids in protein sequence to the natural vector method. Based on these new natural vectors, we can compute the Hausdorff distance between the two clades which represents the dissimilarity. This method enables us to systematically analyze both the dataset of ribosomal proteomes and the dataset of 16s‐23s rRNA sequences in order to reconstruct the phylogeny of Prochlorococcus. Furthermore, we apply classification to inspect the relationship of SS120 and MIT9211. From the reconstructed phylogenetic trees and classification results, we may conclude that the SS120 does not cluster with MIT9211. This study demonstrates a new method for performing phylogenetic analysis. The results confirm that these two strains do not form a monophyletic clade in the phylogeny of Prochlorococcus.     

小肠结肠炎耶尔森菌对多粘菌素B的压力应答

【背景】小肠结肠炎耶尔森菌(Yersinia enterocolitica)是重要的人畜共患食源性病原菌。由于其生存环境与传染性生活方式,小肠结肠炎耶尔森菌暴露在各种生存压力中,而胞膜压力应答能力对维持其环境耐受性和毒力发挥着重要作用。【目的】探究小肠结肠炎耶尔森菌在胞膜压力应答中的调节机制。【方法】通过使用多粘菌素B破坏小肠结肠炎耶尔森菌细胞膜的稳定性,并从生长能力、运动能力、生物被膜形成能力以及相关基因表达的变化探讨Rcs (Regulator of Capsule Synthesis)系统对多粘菌素B产生的胞膜压力的应答。【结果】多粘菌素B引起的细胞胞膜压力抑制了小肠结肠炎耶尔森菌的运动和生物被膜形成能力;而阻断Rcs信号途径后,小肠结肠炎耶尔森菌的运动和生物被膜形成能力有所恢复。对flhC、hmsS、hmsT等关键下游表型基因的表达水平的分析结果表明Rcs双组分系统对由多粘菌素B诱导的胞膜压力作出响应,通过感知胞膜胁迫向胞内传递信号,积极地调控细菌增强对抗菌肽的抗性。【结论】明确了Rcs双组分系统在响应多粘菌素B压力胁迫中的特异性调控作用,加深了对小肠结肠炎耶尔森菌环境应答机制...