Spatial variability of agricultural soil parameters in southern Spain

Spatial patterns for seven soil chemical properties and textures were examined in two fields in southern Spain (Monclova and Caracol, province of Seville, Andalusia) in order to identify their spatial distribution for the implementation of a site-specific fertilization practice. Two sampling grids of 35×20 and 35×35 m were established in Caracol and Monclova, respectively. Fourteen and eight georeferenced soil samples per hectare were collected at two depths (0–0.1 and 0.25–0.35 m) in early November 1998 before fertilizing and planting the winter crop. Data were analyzed both statistically and geostatistically on the basis of the semivariogram. The spatial distribution model and spatial dependence level varied both between and within locations. Some of the soil properties showed lack of spatial dependence at both depths and at the chosen interval (lag h). Such was the case for clay, organic matter and NH₄ at Monclova; and clay and NH₄ at Caracol. Bray P and exchangeable K showed a strong patchy distribution at any field and depth. It is important to know the spatial dependence of soil parameters, as management parameters with strong spatial dependence (patchy distribution) will be more readily managed and an accurate site-specific fertilization scheme for precision farming more easily developed.     

Suppression of Heterodera glycines in soils from fields with long-term soybean monoculture

Experiments were conducted in a greenhouse to evaluate soils for their degree of suppressiveness against the soybean cyst nematode, Heterodera glycines. The soils were collected in 2003 and 2004 from two fields with long-term soybean monoculture and one field with corn/soybean annual rotation. The soils were autoclaved, treated with formalin, or untreated. Both formalin and autoclave treatments removed suppressive factors and increased the nematode egg population density as compared with untreated soil. The mixture of 10% untreated soil with 90% treated soil resulted in similar nematode population densities as in the untreated soils collected from the two monoculture fields, indicating the suppressive factors were biological and can be transferred. The soils from the monoculture fields appeared to be more suppressive than the soil from the corn/soybean rotation. Hirsutella rhossiliensis was observed in all three soils, and parasitised a large percentage of second-stage juveniles of H. glycines in the monoculture soils in 2004. The fungus may be a major factor for the suppression of the nematode population, but in this study other biological factors cannot be ruled out.     

Spatial Pattern Analysis of Plant-Parasitic Nematodes

Spatial patterns of Meloidogyne incognita, Tylenchorhynchus claytoni, Helicotylenchus dihystera, and Criconemella ornata were analyzed using Hill''s two-term local quadrat variance method (TTLQV), spectral analysis, and spatial correlation. Data were collected according to a systematic grid sampling plan from seven tobacco fields in North Carolina. Different estimates of nematode cluster size were obtained through TTLQV and spectral analysis. No relationship was observed between either estimate and nematode species, time of sampling (spring vs. fall), or mean density. Cluster size estimates obtained from spectral analysis depended on sampling block size. For each species examined, spatial correlations among nematode population densities were greater within plant rows than across rows, indicating that clusters were ellipsoidal with long axes oriented along plant rows. Analysis of mean square errors indicated that significant gains in sampling efficiency resulted from orienting the long axis of sampling blocks across plant rows. Spatial correlation was greater in the fall than in spring and was greater among 1 × 1-m quadrats than among 3 × 3-m quadrats.     

Relationship Between Meloidogyne hapla Density and Damage to Carrots in Organic Soils

Field and growth chamber experiments were conducted to determine the effect of five initial densities (Pi - 20 - 240/100 cm³ soil) of Meloidogyne hapla on carrot development and yield of storage roots at maturity. Carrots growing in infested and noninfested organic soil were harvested after 15, 29, 44, 59, and 106 days of growth in controlled environment chambers and after l l 0 days in field plots. Nematodes affected weight of roots and foliage, weight and length of the storage portion of tap roots, and induced malformations (forking), galling, and hairiness of tap roots. In most cases the data could not be represented satisfactorily by the exponential model of Seinhorst: y = m + (l-m) Z^P-t. In growth chambers the weight of mature storage roots was not correlated to initial nematode density, but there was a significant negative correlation between weight of storage roots and initial nematode density in field plots. Tolerance levels were calculated as points where the regression lines reached the growth level on noninoculated plants. The tolerance levels of foliage were higher than those of roots, and increased with age of plants. The tolerance level of marketable weight in field plots, average crop value, and a hypothetical control cost function are used to discuss the possibility of optimizing chemical control of root-knot nematode in organic soils.     

Statistical opportunities for analyzing spatial and temporal heterogeneity of field soils

Statistical techniques for analyzing data in the agricultural sciences have traditionally followed the pioneering efforts of R.A. Fisher who assumed that observations in the field were independent and identically distributed. Such techniques, proven useful in the past and still being used today for comparing the merits of different management practices or different treatments, are presently giving way to additional methods that are based upon observations being spatially or temporally correlated. It is physically more sensible to expect soil attributes to be correlated when they are measured at adjacent points in space or time. Spatially repetitious patterns of soil attributes for physical and biological processes occurring at distances of a few molecules to those of kilometers are also expected. Opportunities to use geostatistics, time series analyses, state-space models, spectral analyses of variance, lagged regression models and other alternative techniques for analyzing multidimensional random fields are available to enhance the understanding of agro-ecosystems. Approaches to modeling and fitting data using stochastic partial differential equations and scaling techniques also help reveal the underlying processes occurring in field soils. Inclusion of these alternatives in the development of an agro-ecological technology leads to improved sampling designs to better entire management units, rather than ascertaining the impact of particular, sometimes arbitrary treatments applied to a set of small plots using analysis of variance methods.     

Anhydrobiotic Coiling of Nematodes in Soil

Nematodes of three genera (Acrobeloides sp., Aphelenchus avenae, and Scutellonema brachyurum) were induced to coil and enter anhydrobiosis in drying soil of two types: sandy loam and loamy sand. Coiling was studied in relationship to soil moisture characteristics. Coiling and the physiological state of anhydrobiosis occurred before the water in sandy soils reached a water potential of -15 bars. Coiling was maximum at 3-6 bars, depending on the soil type and nematode species. It appeared that induction of coiling and anhydrohiosis were determined by the physical forces exerted by the water film surrounding the nematode, which, for these three species, was 6-9 monomolecular layers of water, rather than the % moisture and relative humidity of the soil per se.     

Feeding preference as a main determinant of microscale patchiness among terrestrial nematodes

Soil biota are responsible for essential ecosystem services such as carbon storage, nutrient cycling and water retention. However, assessment of the condition of soil biota is hampered by an overwhelming level of diversity. With representatives in all trophic levels of the food web, nematode communities can be used as bioindicators. Accurate assessment of nematode assemblages requires insight into the distribution of specimens with distinct food preferences. With the availability of taxon‐specific quantitative PCR assays, distribution patterns of multiple nematode groups can be investigated simultaneously. Here, microscale patchiness of 45 nematode taxa was studied on 12 sampling sites (each with four adjacent microplots) located on arable fields or semi‐natural grasslands (‘system’), and on marine, river clay or sandy soils (‘soil type’). From each microplot, five composite samples were collected. Contrary to our expectations, an increase in the number of cores per composite sample did not result in more accurate measurements, and apparently the levels of microscale patchiness of the taxa are low compared to what has been reported for oligophagous plant‐parasites. System and soil type did not affect microscale distribution. To investigate the level of patchiness in more detail, detection probability (DP) and variability of abundances were calculated. Common and widespread bacterivorous and fungivorous taxa had DP ≥ 90%, confirming low level of microscale patchiness. With DPs of 40%–70%, predators and most omnivores showed degrees of local clustering. An overview of mean variabilities of abundances is presented that offers insight into how feeding preferences impact the microscale distribution both between and within trophic groups.     

Probability of detecting nematode infestations for quarantine sampling with imperfect extraction efficacy

For quarantine sampling, it is of fundamental importance to determine the probability of finding an infestation when a specified number of units are inspected. In general, current sampling procedures assume 100% probability (perfect) of detecting a pest if it is present within a unit. Ideally, a nematode extraction method should remove all stages of all species with 100% efficiency regardless of season, temperature, or other environmental conditions; in practice however, no method approaches these criteria. In this study we determined the probability of detecting nematode infestations for quarantine sampling with imperfect extraction efficacy. Also, the required sample and the risk involved in detecting nematode infestations with imperfect extraction efficacy are presented. Moreover, we developed a computer program to calculate confidence levels for different scenarios with varying proportions of infestation and efficacy of detection. In addition, a case study, presenting the extraction efficacy of the modified Baermann's Funnel method on Aphelenchoides besseyi, is used to exemplify the use of our program to calculate the probability of detecting nematode infestations in quarantine sampling with imperfect extraction efficacy. The result has important implications for quarantine programs and highlights the need for a very large number of samples if perfect extraction efficacy is not achieved in such programs. We believe that the results of the study will be useful for the determination of realistic goals in the implementation of quarantine sampling.     

Statistical and Economic Techniques for Site-specific Nematode Management

Recent advances in precision agriculture technologies and spatial statistics allow realistic, site-specific estimation of nematode damage to field crops and provide a platform for the site-specific delivery of nematicides within individual fields. This paper reviews the spatial statistical techniques that model correlations among neighboring observations and develop a spatial economic analysis to determine the potential of site-specific nematicide application. The spatial econometric methodology applied in the context of site-specific crop yield response contributes to closing the gap between data analysis and realistic site-specific nematicide recommendations and helps to provide a practical method of site-specifically controlling nematodes.     

Effect of Short-Chain Fatty Acids and Soil Atmosphere on Tylenchorhynchus spp.

Short-chain fatty acids can be produced under anaerobic conditions by fermentative soil microbes and have nematicidal properties. We evaluated the effects of butyric and propionic acids on death and recovery of stunt nematodes (Tylenchorhynchus spp.), a common parasite of turfgrass. Nematodes in a sand-soil mix (80:20) were treated with butyric or propionic acid and incubated under air or N₂ for 7 days at 25 °C. Amendment of soil with 0.1 and 1.0 µmol (8.8 and 88 µg) butyric acid/g soil or 1.0 µmol (74 µg) propionic acid/g soil resulted in the death of all nematodes. The composition of the soil atmosphere had no effect on the nematicidal activity of the acids. Addition of hydrochloric acid to adjust soil pH to 4.4 and 3.5 resulted in nematode mortality relative to controls (41% to 86%) but to a lesser degree than short-chain fatty acids at the same pH. Nematodes did not recover after a 28-day period following addition of 10 µmol butyric acid/g soil under air or N₂. Carbon mineralization decreased during this period, whereas levels of inorganic N and microbial biomass-N remained constant. Short-chain fatty acids appear to be effective in killing Tylenchorhynchus spp. independent of atmospheric composition. Nematode mortality appears to be a function of the type and concentration of fatty acid and soil pH.     

Cloned DNA probes for detection of grapevine Flavescence dorée mycoplasma-like organism (MLO)

In 1977, all restrictions on cropping imposed by successive Beet Eelworm Orders, in force since 1943, were removed. To monitor the effect of this relaxation, surveys for beet cyst nematode (Heterodera schachtii), were undertaken annually between 1977 and 1988 in seven sugar-beet-growing areas thought to be most at risk from the nematode. In Area 1 (approximately the “Scheduled Area” of the Beet Eelworm Orders, comprising mainly the East Anglian fens), detectable infestations increased from 8.3% of fields sampled in 1977 to 34.0% in 1985, and thereafter stabilised at about 30% of fields sampled. Detectable infestations increased in only one other Area (West Norfolk and West Suffolk, adjacent to Area 1). The incidence of detectable infestations was directly related to the length of the break between host crops. Soil-applied pesticides, principally targetted at arthropod pests, had no apparent effect on the incidence of detectable infestations of H. schachtii.     

Granite Rock Outcrops: An Extreme Environment for Soil Nematodes?

We studied soil nematode communities from the surface of granite flatrock outcrops in the eastern Piedmont region of the United States. The thin soils that develop here experience high light intensity and extreme fluctuations in temperature and moisture and host unique plant communities. We collected soils from outcrop microsites in Virginia (VA) and North Carolina (NC) in various stages of succession (Primitive, Minimal, and Mature) and compared soil properties and nematode communities to those of adjacent forest soils. Nematodes were present in most outcrop soils, with densities comparable to forest soils (P > 0.05). Nematode communities in Mature and Minimal soils had lower species richness than forest soils (P < 0.05) and contained more bacterial-feeders and fewer fungal-feeders (P < 0.05). Primitive soils contained either no nematodes (NC) or only a single species (Mesodorylaimus sp., VA). Nematode communities were similar between Mature and Minimal soils, according to trophic group representation, MI, PPI, EI, SI, and CI (P > 0.05). Forest soils had a higher PPI value (P < 0.05), but otherwise community indices were similar to outcrop soils (P > 0.05). Outcrop nematode communities failed to group together in a Bray-Curtis cluster analysis, indicating higher variability in community structure than the Forest soils, which did cluster together. A high proportion of the nematodes were extracted from outcrop soils in coiled form (33-89%), indicating that they used anhydrobiosis to persist in this unique environment.     

Spatial heterogeneity of DTPA-extractable zinc in cultivated soils induced by city pollution and land use

The spatial heterogeneity of DTPA-extractable zinc in the cultivated soils of Shenyang suburbs in Liaoning Province of China was investigated, and its map was drawn by the methods of geostatistics combined with geographic information system. The data of soil DTPA-extractable zinc fitted normal distribution after logarithm transformation, and its semivariogram fitted a spherical model. The semivariogram indicated that the spatial dependence of soil DTPA-extractable zinc content was moderate, with the spatial dependence range of 1.69 km and the fractal dimension of 1.96. Stochastic factors contributed to 49.9% of the spatial variability, while structural factors contributed to 50.1% of it. The spatial heterogeneity of soil DTPA-extractable zinc shown by a kriged interpolation map was deeply influenced by stochastic factors such as city pollution, land use pattern and crop distributions. For example, the average content of Zn in vegetable garden soils was 2.5-4 times as much as in their originated soils, and was lower in paddy soils than in their originated soils. The areas with a higher content of soil DTPA-extractable zinc appeared in the near suburbs and the riverside along Hunhe River and the wastewater drainage of Xihe River, and the extremely high values in the near suburb of the city's residential area were a striking feature, indicating the key role of city pollution in the spatial heterogeneity of soil DTPA-extractable zinc. When recorded in the form of a soil pollution map,the results of such a survey make it possible to identify the unusually polluted areas, and to provide more information for precise agriculture and environmental control.     

Survival of Xiphinema index in clay loam soil

A sample of clay loam vineyard soil, containing the nematode Xiphinema index, was divided into equal portions and stored in plastic bags. Nematodes were extracted immediately or remained in fridge for a short time or at room temperature for longer periods. The number of extracted nematodes did not differ significantly between treatments, indicating that X. index in soil samples collected for diagnostic purposes could remain viable for a period up to six months. Four other samples, of similar soil type, were collected from different vineyards and kept stored in plastic bags at room temperature. Variable periods of nematode survival recorded, ranging from less than two years in one sample, up to five years in another one. It is concluded that a long fallow period of at least five years may be required between successive grapevine crops to eliminate the nematode from clay loam soils.     

Spatial heterogeneity of DTPA-extractable zinc in cultivated soils induced by city pollution and land use

The spatial heterogeneity of DTPA-extractable zinc in the cultivated soils of Shenyang suburbs in Liaoning Province of China was investigated, and its map was drawn by the methods of geostatistics combined with geographic information system. The data of soil DTPA-extractable zinc fitted normal distribution after logarithm transformation, and its semivariogram fitted a spherical model. The semivariogram indicated that the spatial dependence of soil DTPA-extractable zinc content was moderate, with the spatial dependence range of 1.69 km and the fractal dimension of 1.96. Stochastic factors contributed to 49.9% of the spatial variability, while structural factors contributed to 50.1% of it. The spatial heterogeneity of soil DTPA-extractable zinc shown by a kriged interpolation map was deeply influenced by stochastic factors such as city pollution, land use pattern and crop distributions. For example, the average content of Zn in vegetable garden soils was 2.5-4 times as much as in their originated soils, an     

Effect of Controlled Cold Storage on Recovery of Rotylenchulus reniformis from Naturally Infested Soil

Rotylenchulus reniformis is rapidly becoming the most economically important pest associated with cotton in the southeastern United States. Incentive programs have been implemented to support sampling of production fields to determine the presence and abundance of R. reniformis. These sampling programs have dramatically increased the number of soils samples submitted to nematology laboratories during autumn. The large numbers of samples overwhelm most labs and require placement in cold storage until extraction. Therefore, the objective of this study was to examine the length of time soils infested with R. reniformis can be stored before nematode extraction without compromising the accuracy of estimates of population densities. A sandy loam and a silty loam were the two cotton production soils used in this study. Rotylenchulus reniformis numbers decreased 61%during the first 180 days of storage in both soils. Rotylenchulus reniformis numbers from the initial sampling through 180 days decreased as a linear function. The decline of R. reniformis numbers during storage was estimated as 0.28% of the population lost daily from the maximum population through 180 days. The diminution of nematode numbers from 180 through 1,080 days in storage continued, but at a slower rate. Numbers of R. reniformis declined to less than 89%, 93%, and 99% of the initial population within 360, 720, and 1,080 days, respectively, of storage. The reduction of R. reniformis numbers over 180 days can be adjusted, allowing a more accurate estimation of R. reniformis levels in soil samples stored at 4 °C.     

Free‐living nematodes as prey for higher trophic levels of forest soil food webs

Nematodes are the most abundant invertebrates in soils and are key prey in soil food webs. Uncovering their contribution to predator nutrition is essential for understanding the structure of soil food webs and the way energy channels through soil systems. Molecular gut content analysis of consumers of nematodes, such as soil microarthropods, using specific DNA markers is a novel approach for studying predator–prey interactions in soil. We designed new specific primer pairs (partial 18S rDNA) for individual soil‐living bacterial‐feeding nematode taxa (Acrobeloides buetschlii, Panagrellus redivivus, Plectus velox and Plectus minimus). Primer specificity was tested against more than 100 non‐target soil organisms. Further, we determined how long nematode DNA can be traced in the gut of predators. Potential predators were identified in laboratory experiments including nine soil mite (Oribatida, Gamasina and Uropodina) and ten springtail species (Collembola). Finally, the approach was tested under field conditions by analyzing five mite and three collembola species for feeding on the three target nematode species. The results proved the three primer sets to specifically amplify DNA of the respective nematode taxa. Detection time of nematode DNA in predators varied with time of prey exposure. Further, consumption of nematodes in the laboratory varied with microarthropod species. Our field study is the first definitive proof that free‐living nematodes are important prey for a wide range of soil microarthropods including those commonly regarded as detritivores. Overall, the results highlight the eminent role of nematodes as prey in soil food webs and for channelling bacterial carbon to higher trophic levels.     

Influence of ecological and edaphic factors on biodiversity of soil nematodes

Nematodes are the most diverse and highly significant group of soil-inhabiting microorganisms that play a vital role in organic material decomposition and nutrient recycling.Diverse geographical locations and environmental gradients show a significant impact on the diversity of nematodes. Present study aims to assess the effects of ecological (altitude, temperature, moisture) and edaphic (soil pH, nutrients, soil patches) factors on the soil nematode diversity and structure at five different landscape patches (forests, apple orchards, rice fields, pastures, and alpine zone) from ten different sites of Kashmir valley (India). Differences in the altitudinal gradients results in the shift of generic nematode population. Among the soil patches, highest nematode diversity was observed in forest soil and least in alpine soil; however, bacteriovorous nematodes dominated all the soil patches. The temperature and moisture have a significant effect on nematode diversity, the highest nematode trophic levels were observed above 21°C temperature, and 30% moisture. Nematode abundance decreased from alkaline to acidic pH of the soil. Soil nutrients such as, nitrogen (N) and phosphorus (P) have shown a detrimental effect in nematode richness at each site, where nematode diversity and richness of genera were higher at abundant soil N and P but decreased at low soil nutrients. Ecological indices like diversity index (DI), Shannon-Wiener Index (H'), enrichment index (EI), and maturity Index (MI) values demonstrated forest soil more favourable for nematodes and high soil health status than other soil patches. This study suggested that these indices may be helpful as soil monitoring tools and assessing ecosystem sustainability and biodiversity.     

Soil strength and macropore volume limit root elongation rates in many UK agricultural soils

Background and Aims

Simple indicators of crop and cultivar performance across a range of soil types and management are needed for designing and testing sustainable cropping practices. This paper determined the extent to which soil chemical and physical properties, particularly soil strength and pore-size distribution influences root elongation in a wide range of agricultural top soils, using a seedling-based indicator.

Methods

Intact soil cores were sampled from the topsoil of 59 agricultural fields in Scotland, representing a wide geographic spread, range of textures and management practices. Water release characteristics, dry bulk density and needle penetrometer resistance were measured on three cores from each field. Soil samples from the same locations were sieved, analysed for chemical characteristics, and packed to dry bulk density of 1·0 g cm⁻³ to minimize physical constraints. Root elongation rates were determined for barley seedlings planted in both intact field and packed soil cores at a water content close to field capacity (–20 kPa matric potential).

Key Results

Root elongation in field soil was typically less than half of that in packed soils. Penetrometer resistance was typically between 1 and 3 MPa for field soils, indicating the soils were relatively hard, despite their moderately wet condition (compared with <0·2 MPa for packed soil). Root elongation was strongly linked to differences in physical rather than chemical properties. In field soil root elongation was related most closely to the volume of soil pores between 60 µm and 300 µm equivalent diameter, as estimated from water-release characteristics, accounting for 65·7 % of the variation in the elongation rates.

Conclusions

Root elongation rate in the majority of field soils was slower than half of the unimpeded (packed) rate. Such major reductions in root elongation rates will decrease rooting volumes and limit crop growth in soils where nutrients and water are scarce.     

Ecology of nematophagous fungi: Effect of the soil nutrients N,P and K,and seven major metals on distribution

The effects of the major soil nutrients and seven common metals on the distribution of nematophagous fungi were evaluated by comparing the concentration of the elements in soils with and without nematophagous fungi. Mineral nutrients, which were all positively correlated with nematode density, were the most important elements determining the presence of such fungi. Endoparasites producing adhesive conidia were independent of all the elements tested, while those species forming ingested conidia were isolated from soils high in nutrients, indicating a strong dependence on nematode density. Knob forming predators which rely on their ability to spontaneously produce traps to obtain nutrients were isolated from soils with low concentrations of mineral nutrients, while species with constricting rings were isolated from richer soils containing a greater density of nematodes. Net-forming species were largely independent of soil fertility, although generally they were isolated from soils with limited nutrientsd, especially K. Like other fungi, nematophagous fungi are generally not found in soils containing elevated concentrations of heavy metals. The results indicate that even concentrations of heavy metals which naturally occur in Irish soils can restrict the distribution of this fungal group. However the endoparasiteMeria coniospora is tolerant to all metals and to Cu in particular.