Diversity of fungal DNA in lake sediments on Vega Island,north-east Antarctic Peninsula assessed using DNA metabarcoding

Extremophiles - We assessed the diversity of fungal DNA present in sediments of three lakes on Vega Island, north-east Antarctic Peninsula using metabarcoding through high-throughput sequencing...     

Diversity and ecology of fungal assemblages present in lake sediments at Clearwater Mesa,James Ross Island,Antarctica, assessed using metabarcoding of environmental DNA

We detected the fungal assemblages present in lake sediments on James Ross Island, Antarctica, using DNA metabarcoding. A total of 132 amplicon sequence variants (ASVs) were assigned, dominated by taxa of the phyla Ascomycota, Basidiomycota, Mortierellomycota and Mucoromycota. The less common phyla Chytridiomycota, Rozellomycota, Monoblepharomycota, Basidiobolomycota, Aphelidiomycota and the fungus-like Straminopila were also detected. Fungal sp. 1, Fungal sp. 2, Spizellomycetales sp. 1, Rozellomycotina sp. 1, Talaromyces rubicundus and Betamyces sp. dominated the assemblages. In general, the assemblages displayed high diversity and richness, and moderate dominance. Saprophytic, pathogenic and symbiotic fungi were detected. The metabarcoding data indicated that Antarctic lakes may represent a hotspot of fungal diversity in Antarctica. The sediments of these lakes may accumulate different fungal fragments and active fungal mycelia and their propagules, deposited over long periods of time. Lakes in the Antarctic Peninsula region are sensitive environments threatened by the effects of regional climatic changes. The abundance of sequences of little-known Rozellomycota and Chytridiomycota (Spizellomycetales) taxa in these ecosystems highlights the need for further studies to identify if they are metabolically active in the sediments and whether they have potentially pathogenic capabilities.     

Filamentous green algae in freshwater streams on Signy Island,Antarctica

The streams of Signy Island are varied and extremely seasonal environments. Water flows from November/December to March/April; streams are frozen for the rest of the year. Streams usually flow through small, barren catchments and are nutrient poor, though they may be enriched by dense summer populations of seabirds and seals. Temperatures are consistently low. Stream depth is maximal during the spring melt period, declining over the course of the summer. Vegetation is exclusively algal, and filamentous chlorophytes from a particularly conspicuous component. Small numbers of vegetative cells survive the long frozen period in situ. A steady increase in standing crop results in a maximum 2 to 3 months after flow begins. Sloughing is the major loss mechanism and grazers are effectively absent. Three taxa of filamentous algae are common in Signy streams, species of Zygnema, Mougeotia and Klebsormidium. The distributions of these algae are described and related to physical and chemical features of their environment.     

Patterns of energy storage in Pseudoboeckella poppei (Crustacea,copepoda) from two contrasting lakes on Signy Island,Antarctica

The copepod Pseudoboeckella poppei (Daday) (Calanoida, Centropagidae) was sampled from Sombre and Heywood Lakes on Signy Island, Antarctica (60° S, 45° W) between January 1984 and March 1985. Sombre Lake is clear and oligotrophic with little phytoplankton and a bottom sediment low in organic content. By contrast Heywood Lake is turbid and mesotrophic; a substantial phytoplankton develops in summer and the bottom sediments are comparatively rich in organics. Both lakes freeze over for much of the year, forcing the copepods to adopt a benthic feeding strategy over winter. Adult Pseudoboeckella feed on phytoplankton when this is available, but also on detritus, diatoms and short algal filaments stirred up from the sediment. In Heywood Lake, male copepods show a smooth seasonal trend in lipid content with lipid being synthesised in early summer and utilised in late summer and winter. The summer increase in lipid content is associated with an increase in dry weight. Female lipid contents show evidence of two peaks of egg production. In Sombre Lake both male and female copepods increase in size during summer and show a wider range of lipid contents than in Heywood Lake; it is likely that this is due to the poorer winter feeding conditions which necessitate the synthesis of a much larger store of reserves during the summer. In contrast to marine calanoid copepods, lipid stores are exclusively triacylglycerol with no trace of wax ester.     

Benthic algal mats of some lakes of Inexpressible Island (northern Victoria Land,Antarctica)

 Benthic algal mats from four lakes located on Inexpressible Island (northern Victoria Land, Antarctica) were studied, analysing their structure and floristic composition. Thirty taxa of algae were identified: 11 Cyanophyta, 15 Bacillariophyta and 4 Chlorophyta. The lake mats contained from 15 (lake C) to 26 species (lake D). The number of diatom frustules in the mats varied from 771×10³ (lake C) to 9428×10³ frustules g^-1 (lake B). In terms of floristic composition and macromorphology, these mats were observed to be very similar to moat mats described from Lake Gondwana (northern Victoria Land) and the Dry Valleys lakes of southern Victoria Land. Received: 9 July 1995/Accepted: 12 February 1996     

Microbial mats of twenty-six lakes from Potter Peninsula,King George Island,Antarctica

The taxonomic composition and ecology of microbial mats were investigated in 26 lentic environments of Potter Peninsula (King George Island, Antarctica) during the summer of 1995/96. These have different limnological characteristics according to the location of the basins. Among the 139 algal taxa registered, 10 are new records for Antarctica. Bacillariophyceae was the dominant class in terms of species richness, followed by the Cyanobacteria and Chlorophyceae. TWINSPAN classification was used to describe six epilithic algal assemblages; Canonical Correspondence Analysis ordination showed that soluble reactive phosphorus, phytoplanktonic chlorophyll a concentration and conductivity were the main sources for the variation in the data.     

Chitinase genes in lake sediments of Ardley Island, Antarctica

A sediment core spanning approximately 1,600 years was collected from a lake on Ardley Island, Antarctica. The sediment core had been greatly influenced by penguin guano. Using molecular methods, the chitinolytic bacterial community along the sediment core was studied over its entire length. Primers targeting conserved sequences of the catalytic domains of family 18 subgroup A chitinases detected group A chitinases from a wide taxonomic range of bacteria. Using quantitative competitive PCR (QC-PCR), chitinase gene copies in each 1-cm section of the whole sediment column were quantified. QC-PCR determination of the chitinase gene copies indicated significant correlation with phosphorus and total organic carbon concentration, suggesting a historical connection between chitinase gene copies and the amount of penguin guano input into the lake sediment. Most of the chitinase genes cloned from the historic sediment core were novel. Analysis of the chitinase gene diversity in selected sediment layers and in the fresh penguin deposits indicated frequent shifts in the chitinolytic bacterial community over time. Sequence analysis of the 16S rRNA genes of chitinolytic bacteria isolated from the lake sediment revealed that the isolates belonged to Janthinobacterium species, Stenotrophomonas species of gamma-Proteobacteria, Cytophaga species of the Cytophaga-Flexibacter-Bacteroides group, and Streptomyces and Norcardiopsis species of Actinobacteria. Chitinase gene fragments were cloned and sequenced from these cultivated chitinolytic bacteria. The phylogeny of the chitinase genes obtained from the isolates did not correspond well to that of the isolates, suggesting acquisition via horizontal gene transfer.     

Periphyton on artificial substrata from three lakes of different trophic status at Hope Bay (Antarctica)

The nutrient characteristics of aquatic environments at Hope Bay (Antarctica) depend on different factors, penguin enrichment being one of the most important. In this study we surveyed three water bodies of different morphometry and trophic status: Esperanza Lake (oligotrophic), Boeckella Lake (meso-eutrophic), and Pingüi Pond (hypereutrophic). This research provides a preliminary characterization of the periphyton colonization on artificial substrata (glass slides) of these water bodies from the end of January to mid-March 2000. Qualitative and quantitative analyses of the algae, chlorophyll a, dry weight, ash-free dry weight, and physical and chemical variables of the lakes were assessed. The Autotrophic Index and the Lakatos system of classification were also applied. All three lakes differed clearly in all the variables considered. The periphyton from Esperanza Lake was first dominated by Bacillariophyceae and subsequently by the chrysophyce Phaeogloea mucosa. P. mucosa was the dominant species at Boeckella Lake and Chlamydomonas subcaudata was dominant at Pingüi Pond. Highest mean maximum density values were reached at Pingüi Pond, followed by Boeckella and Esperanza Lakes. Highest biomass figures were registered with increasing trophic status. According to the Lakatos index, the periphyton of Esperanza Lake was the least developed and it was mainly organic and heterotrophic; Boeckella Lake showed intermediate development in periphyton mass, which was autotrophic and mainly inorganic whereas Pingüi Pond showed the highest development in periphytic mass, and it was mainly autotrophic.     

Thermal summer characteristics of lakes and ponds on Deception Island,Antarctica

During January and February 1981, water temperature measurements were made in lakes and ponds of Deception Island, Antarctica. The depth of these waterbodies varies between 0.88 m and 36 m, with maximum surface areas of over 290 000 m². Some ponds freeze completely during winter, and the lakes are covered by ice for 9–10 months of each year. The maximum ice thickness measured in early summer (December), dit not exceed 0.5 m. Solar radiation and geothermal heating largely determine the thermal structure of these aquatic environments. The water temperature of tributary meltwater streams did not exceed 3 °C, but the littoral waters reached 9 °C. The bottom water temperatures of meromictic lakes 5 (Irízar) and 9, are 12.3 °C and 19.9 °C respectively. These deep waters are heated from geothermal sources and it is possible that some ponds may be also influenced by their proximity to hot soils. With the exception of the meromictic lakes, the aquatic environments studied here did not show a vertical stratification of temperature. It is not possible to establish a general thermal classification for the waterbodies of Deception Island. The interaction of the lacustrine morphology, solar radiation and vulcanism produce contrasting thermal features. Taking into account only the upper layers of meromictic lakes (mixolimnion), and emphasizing the fact of that some ponds freeze completely during winter, the waterbodies of Deception Island would be classified as ‘pleomictics’ (Paschaslki, 1964). This work was supported by an agreement between the Instituto Antártico Argentino and the Instituto Nacional de Limnología (Programa Limnoantar). This work was supported by an agreement between the Instituto Antártico Argentino and the Instituto Nacional de Limnología (Programa Limnoantar).     

A Late Cretaceous Chimaerid (Chondrichthyes, Holocephali) from Seymour Island, Antarctica

A chimaerid holocephalian, Chimaera zangerli sp. nov., is described from both palatine tooth plates, two tooth plate fragments, and part of the chondrocranium in a nodule from the Maastrichtian of Antarctica. Possibly the oldest known chimaerid, C. zangerli sp. nov. exhibits a tooth plate which is a morphological intermediate between that of the Jurassic Ganodus and the Oligocene C. rupeliensis . The presence of C. zangerli sp. nov. before the end of the Cretaceous is evidence of the early evolution of the Chimaeridae, considered the most derived of the chimaeroid fishes.     

Early Cretaceous Gleicheniaceae and Matoniaceae (Gleicheniales) from Alexander Island,Antarctica

The first Cretaceous representatives of Matoniaceae and Gleicheniaceae in the Antarctic are described from the Albian flora of Alexander Island. Two new species are recognized, one is assigned to Matonia, and another to the emended gleicheniaceous form-genus Gleicheniaceaephyllum. The taxonomy of fossil genera assigned to Gleicheniaceae is problematic, and as an alternative to the invalid genus Gleichenites, we propose that Microphyllopteris be utilised as a form-genus for species that have either an unknown branching pattern or pseudo-dichotomous branching without resting buds; Microphyllopteris is reserved for ferns that cannot be ascribed conclusively to Gleicheniaceae. Alternatively, Gleicheniaceaephyllum should be used for gleicheniaceous material that has a resting bud amongst two to four primary branches. Gleicheniaceaephyllum acutum sp. nov. is preserved as sterile and fertile fronds, pinnae and pinnules. The other new species, Matonia jeffersonii sp. nov., occurs as sterile and fertile pinnae and pinnules, and is aligned to Matoniaceae based on the presence of circular-oval sori with peltate indusia. The two taxa are inferred to have either a pedate or scrambling habit. These morphologies are relatively common at Alexander Island, compared to other high latitude fossil floras, and are interpreted as an adaptation to the high disturbance, polar conditions and unusual photoperiod experienced at Alexander Island during the Early Cretaceous. The theory that angiosperms caused the demise of ferns is discussed in relation to the Matoniaceae and Gleicheniaceae, and there does not appear to be association between angiosperm expansion and the decline of these two fern families.     

Identity,ecology and ecophysiology of planktic green algae dominating in ice-covered lakes on James Ross Island (northeastern Antarctic Peninsula)

Extremophiles - The aim of this study was to assess the phylogenetic relationships, ecology and ecophysiological characteristics of the dominant planktic algae in ice-covered lakes on James Ross...     

Benthic hydroids (Cnidaria: Hydrozoa) from Peter I Island (Southern Ocean, Antarctica)

Twenty-three species of benthic hydroids, belonging to eight families and 13 genera, were found in a hydroid collection from Peter I Island, collected during both the Bentart 2003 and Bentart 2006 Spanish expeditions with BIO Hespérides in 2003 and 2006. Fourteen out of the 23 species constitute new records for Peter I Island, raising the total number of known species in the area to 30, as also do seven out of the 13 genera. The majority of the species are members of the subclass Leptothecata; the subclass Anthoathecata being scarcely represented. Sertulariidae is the family with the greatest number of species in the collection, with eight species (35%), followed by Lafoeidae with five (22%). Symplectoscyphus with four species (17%) and both Antarctoscyphus and Halecium with three (13%), including H. frigidum sp. nov., were the most diverse genera. Twenty species (ca. 77%) are endemic to Antarctic waters, either with a circum-Antarctic (11 species, ca. 42%) or West Antarctic (9 species, ca. 35%) distribution. Twenty-four (ca. 92%) are restricted to Antarctic or Antarctic/sub-Antarctic waters; only two species have a wider distribution. Peter I Island hydroid fauna is composed of typical representatives of the Antarctic benthic hydroid fauna, though it is characterized by the low representation of some of the most diverse and widespread Antarctic genera (Schizotricha and Staurotheca).     

Freshwater algae from lakes in the lower Niger Delta system (Nigeria)

Samples from two flood plain lakes (Umuorodog-wum I and II) and one permanent natural lake (Oguta) of the lower Niger Delta system (Imo State, Nigeria), representing the outcome of a single sampling campaign in January 1993, are analysed taxonomically. Emphasis is given on the diatom flora but also on some other accompanying algae; a list of 172 algal taxa is currently presented for the area. The relative species abundance patterns and autecology data confirm the frequent occurrence of taxa capable of tolerating the wide environmental fluctuations determined by local conditions of climate and water chemistry. Comparisons are made between the studied lakes including one disturbed site. The results on the water chemistry and biology corroborate findings from similar ecosystems in West Africa. This revised version was published online in July 2006 with corrections to the Cover Date.     

Shifts in fisher (Pekania pennanti) diet in response to climate-induced tree mortality in California assessed with DNA metabarcoding

A recent climate-induced tree mortality event in California, USA has led to dramatic landscape-level changes in the southern Sierra Nevada. Wide-spread conifer mortality was documented in habitat occupied by fisher (Pekania pennanti), a mature-forest associated species of conservation concern in this region. We analyzed fisher scats collected on the Sierra National Forest from the pre-tree-mortality period (PreTM, 2011 – 2013) and post-tree-mortality period (PostTM, 2017 – 2018). We used DNA metabarcoding to successfully identify taxa and summarized diet composition for 109 PreTM and 102 PostTM fisher scats. We observed 48 different diet items (33 assigned to species and 15 to genus). Mammals, birds, and plants of the Ribes genus (gooseberries and currents) comprised the highest proportions of diet items, although scats also contained DNA from reptiles, insects, arachnids, snails, and fungi. The frequency of occurrence of mammalian prey items was lower in PostTM (49.0%) versus PreTM scats (81.7%) with a reduction in the occurrence of two tree squirrels (Douglas squirrel and Humboldt’s flying squirrel). A higher proportion of scats collected PostTM (46.1%) contained DNA from Ribes spp. versus scats collected PreTM (19.3%). Our data reveal potential cascading effects of climate-induced tree mortality on fisher diet in the southern Sierra Nevada. Flexibility in fisher diet, however, may allow resilience to ecological change though future studies should consider the behavioral, energetic, demographic or fitness consequences from a shift away from medium-sized mammalian prey to plants.     

Diatoms (Bacillariophyceae) in sediments of three mountain oligotrophic lakes of the Amguema River basin (Chukotka)

A diatom assemblage found in bottom sediments of mountain oligotrophic lakes in the Amguema River basin (Ervynaigytgyn, Matachingaigytgyn, Ekitiki) is presented for the first time. For each taxon, data on the occurrence in the Beringia region are given. Three new combinations are suggested.     

A new freshwater oligochaete species (Clitellata: Enchytraeidae) from Livingston Island,Antarctica

The new enchytraeid species Lumbricillus healyae sp. n. is described from freshwater streams, with well-oxygenated and poorly mineralised waters, situated in Byers Peninsula (Livingston Island, South Shetland Islands, Antarctica). Lumbricillus healyae sp. n. is morphologically close to L. antarcticus and L. incisus, and it is mainly distinguished by the structure of the spermatheca with a short, distinct ectal duct, the oval penial bulb (greatest diameter in the transverse body axis) associated with strong dorso-ventral muscular fibres, and a protrusible pseudopenis. A second undetermined Lumbricillus species is described from a small stream. Study specimens are not fully mature; however, the highly irregular form and size of the testis-sac lobes and the absence of a penial bulb encapsulated under a muscular layer are remarkable. It is probably related to a small group of Lumbricillus species reported from the Antarctic maritime region (L. colpites, L. griseus and L. aestum), characterised by the structure of the male duct, which ends in a simple pore surrounded by glands.