中国森林生物量的估算：对Fang et al.

 Science杂志于2001年发表了方精云等人关于中国森林植被碳库及其变化的论文(Fang et al., 2001, 291: 2320～2322)。该文利用大量的生物量实测数据,结合使用中国50年来的森林资源清查资料及相关的统计资料,基于生物量换算因子连续函数法,研究了中国森林植被碳库及其时空变化。这是一个大时空尺度的工作,涉及一些大尺度生态学研究的原理、方法以及尺度转换问题。由于篇幅所限,论文并未详细说明这些问题。为了帮助理解大尺度生态学研究的方法和思路,本文给出了论文中涉及生物量计算的理论基础,对     

When is it coevolution? A reply to Morgan-Richards et al.

I recently hypothesised that some characteristics of fleshy-fruits in New Zealand could result from coevolution with wētā (Burns 2006a). Morgan-Richards et al. (2007) expand on the subject by offering some suggestions on how this hypothesis could be tested and by conducting several small field trials. In the process they argue emphatically against the hypothesis.Morgan-Richards et al. (2007) have rather strong opinions concerning the validity of the hypothesis that some New Zealand fruits are adapted for wētā dispersal. Future work might very well validate their opinion. Unfortunately, the data and logic contained in their Forum paper do not bring us any closer to the truth.     

Reclassification of “Flavobacterium arborescens” (Frankland and Frankland) Bergey et al. in the genusMicrobacterium (Orla-Jensen) Collins et al., asMicrobacterium arborescens comb. nov., nom. rev.

Flavobacterium arborescens (Frankland and Frankland) Bergey et al. IFO 3750 (ATCC 4358) is a Gram-positive, coryneform bacterium and the only available reference strain of the species. The cell wall peptidoglycan of the organism possesses alanine, glycine, lysine, glutamic acid plus 3-hydroxyglutamic acid, and homoserine at a ratio of 1:3:1:1:1, and a possible peptidoglycan structure is the B1 type described by Schleifer and Kandler. Cell wall sugars are galactose, mannose, and 6-deoxy-l-talose, but not rhamnose. Major menaquinones are unsaturated MK-11 and MK-12. These findings and other taxonomic properties suggest that F. arborescens should be reclassified in the genusMicrobacterium (Orla-Jensen) Collins et al., asMicrobacterium arborescens comb. nov., nom. rev.     

Evolution du genre Vakerina Schroeder et al. 1968 et l’origine des Palorbitolines [Foraminiferida]

The genus Palorbitolina Schroeder 1963 which is world-wide distributed on carbonate platforms of the Tethys during the interval Late Barremian - basal Late Aptian has developed from the genus Vakerina Schroeder et al. 1968 occurring in SW Europe since Late Hauterivian. The evolution of the phylogenetic lineage Vakerina primitiva - V. broennimanni - V. charollaisi - Palorbitolina turbinata is discussed.     

Early human dispersals into the Iberian Peninsula: a comment on Martínez et al.(2010) and Garcia et al. (2011)

Garcia et al. (2011) recently discussed early human dispersals into the Iberian Peninsula, describing several putative lithic artifacts (Martínez et al., 2010) recovered from layer 7 of the Vallpara díssection (Madurell-Malapeira et al., 2010) in Terrassa (Vallès-Penedès Basin, Catalonia, Spain). According to the authors' opinion, such evidence (1) fills a gap in the chronology of early human occupation in Iberia, (2) indicates that these populations had primary and early access to carcasses, and (3) confirms that early human populations were equipped with advanced cultural traits enabling them to survive in unfavourable climatic conditions. We argue below that the record of human activity at Vallparadís (Martínez et al., 2010;Garcia et al., 2011) is doubtful and even that if confirmed, a chronological gap would remain (contra Garcia et al., 2011). Additional remarks on assertions by these authors on the Vallparadís geology, taphonomy and paleonvironment are also provided.     

Genome sequences and description of novel exopolysaccharides producing species Komagataeibacter pomaceti sp. nov. and reclassification of Komagataeibacter kombuchae (Dutta and Gachhui 2007) Yamada et al., 2013 as a later heterotypic synonym of Komagataeibacter hansenii (Gosselé et al. 1983) Yamada et al., 2013

Strains T5K1 and AV446 isolated from apple cider vinegars during a submerged vinegar production in two separate vinegar facilities showed 94% 16S rRNA gene similarity to its closest neighbors Komagataeibacter maltaceti LMG 1529^T and Gluconacetobacter entanii LTH 4560^T. Further phylogenetic and phenotypic characterizations indicated that the isolates belonged to a novel species of the Komagataeibacter genus. Comparison based on 16S–23S rRNA gene ITS sequences and concatenated partial sequences of the housekeeping genes dnaK, groEL and rpoB, grouped both strains to a single phylogenetic cluster well separated from the other species of the Komagataeibacter genus. Average nucleotide identity of T5K1 and AV446 draft genome sequences compared to other Komagataeibacter type strains was below 94% and at the same time, in-silico DNA–DNA hybridization was below 70%. Both strains on the other hand showed approximately 98% (average nucleotide identity) and 87% (in silico DNA–DNA hybridization) similarity to each other. Strains T5K1 and AV446 can be differentiated from other Komagataeibacter type strains based on their ability to produce 2-keto-d-gluconic acid and at the same time inability to produce 5-keto-d-gluconic acid. Furthermore, strains of the new species do not grow on Asai medium supplemented with d-glucose or d-mannitol. The growth is also absent (T5K1) or weak (AV446) on Hoyer–Frateur medium supplemented with afore mentioned sugars. Both strains produce cellulose. In addition, draft genome analysis revealed that strains T5K1 and AV446 possess genes involved in the synthesis of acetan-like extracellular heteropolysaccharide. We propose the name Komagataeibacter pomaceti sp. nov. for the new species with LMG 30150^T [= CCM 8723^T = ZIM B1029^T] as the type strain. Data collected in this study and in a previous study also revealed that Komagataeibacter kombuchae is a later heterotypic synonym of Komagataeibacter hansenii.