Intracellular signalling: chloroplast backchat

Chloroplast-derived signals modulate expression of nuclear genes for chloroplast proteins. GUN1 has recently been identified as a chloroplast-localized pentatricopeptide repeat protein that integrates information from several different signalling pathways.     

Intracellular signalling: the chloroplast talks!

Plant cells have a unique problem: the coordination of three different genomes. While the dominance of the nuclear genome is indisputable, it is now clear that organellar signals can have profound effects, not just on nuclear gene expression but, as the Arabidopsis laf6 mutant reveals, also on whole plant morphology.     

Changing the light environment: chloroplast signalling and response mechanisms

Light is an essential environmental factor required for photosynthesis, but it also mediates signals to control plant development and growth and induces stress tolerance. The photosynthetic organelle (chloroplast) is a key component in the signalling and response network in plants. This theme issue of Philosophical Transactions of the Royal Society of London B: Biology provides updates, highlights and summaries of the most recent findings on chloroplast-initiated signalling cascades and responses to environmental changes, including light and biotic stress. Besides plant molecular cell biology and physiology, the theme issue includes aspects from the cross-disciplinary fields of environmental adaptation, ecology and agronomy.Oxygenic photosynthetic organisms carry out the most intriguing reaction on Earth, namely the conversion of light energy from the sun into chemical energy, which also results in oxygen as a by-product. The photosynthetic end products (sugars) drive most processes in living cells on Earth. As photosynthetic organisms represent the basis of our daily life (food, energy, materials), effects on their primary productivity have an impact on the society in various aspects, for instance economy, ecological sustainability and even our lifestyle. Photosynthetic organisms, particularly plants which are essentially sessile, have to constantly deal with changes in a wide range of abiotic and biotic factors in their immediate environment on a seasonal as well as daily basis. The chloroplast is a light-driven energy factory, but besides this primary mission it perceives signals from surroundings to adjust plant development and induce adaptation to ever-changing environmental cues.The signalling cascades start from various chloroplast processes but merge later or crosstalk with each other and with other signalling cascades (figure 1). For example, acclimation of plants to excess light conditions may also simultaneously increase the tolerance to other abiotic stress factors [1]. Recently, chloroplasts were also recognized to perceive and mediate signals that promote tolerance against plant pathogens (immune defence) or that are involved in hormone perception [2]. Resolving the crosstalk between the cascades is most important for understanding physiological responses in plants under ever-changing environments, and for predicting how plants survive under natural growth conditions. Open in a separate windowFigure 1.Overview of light-induced chloroplast signalling and response mechanisms, covered by papers in this theme issue. Chl, chlorophyll; NPQ, non-photochemical quenching; ROS, reactive oxygen species; ST, state transition; Trx, thioredoxin. (Online version in colour.)This theme issue of Philosophical Transactions of the Royal Society of London B: Biology covers the most recent findings and updates on the molecular short-term mechanisms used by the chloroplast to adjust its function to changes in light conditions, and on the signalling pathways that induce long-term adaptive responses, such as stress tolerance and immune defence in plants (figure 1). It focuses on the current understanding of the crosstalk between signalling networks activated by chloroplasts and mitochondria, light receptors and those induced by biotic stress. It also focuses on the variation of the adaptive mechanisms in natural population and on their agricultural and ecological impacts. Thus, besides plant molecular cell biology and physiology, the theme issue includes aspects from the cross-disciplinary fields of environmental adaptation, ecology and agronomy. It consists of 10 research articles and nine reviews covering the following four topics: (i) short-term adaptive responses in chloroplasts, (ii) chloroplast-to-nucleus signalling and crosstalk with other signalling pathways, (iii) natural variation of regulatory mechanisms to allow for adaptation and (iv) agricultural and ecological perspective of light responses in chloroplasts.Light signals perceived by chlorophyll (Chl) in the thylakoid membrane and by photoreceptors in the cytosol activate various short-term adaptive responses including enzyme regulation, photoprotection and repair (figure 1). Ebenhöh et al. [3] propose a mathematical model for relative contributions of non-photochemical quenching (NPQ) and state transition (ST) in light acclimation. The paper by Cazzaniga et al. [4] identifies photoreceptor-dependent chloroplast movement as an additional pathway used to dissipate the excess absorbed energy, whereas Ruban & Belgio [5] investigate NPQ in relation to maximum light intensity tolerated by plants. Bertrand et al. [6] investigate the different mechanisms involved in NPQ relaxation in diatoms. Nikkanen & Rintamäki [7] and Kirchhoff [8] review the current knowledge on chloroplast processes regulated by thioredoxins under changing light environment and processes in the thylakoid membrane associated with the photosystem II repair cycle in high light stress, respectively.Together with adjustments of metabolic processes and induction of photoprotective mechanisms, light initiates signalling to the nucleus for gene expression, resulting in various long-term adaptive responses, including development and growth, stress and programmed cell death (figure 1). Larkin [9] provides an updated insight into the impact of the GENOMES UNCOUPLED genes on plastid-to-nucleus signalling and reviews the influence of plastids on light receptor signalling and development, whereas the contribution by Blanco et al. [10] searches for new components integrating mitochondrial and plastid retrograde signals that regulate plant energy metabolism. Alsharafa et al. [11] investigate the kinetics of events involved in initiation of high light acclimation, and Tikkanen et al. [12] show that chloroplast signalling interacts with both reactive oxygen species (ROS) and hormonal signalling. ROS signalling is also highlighted in the papers by Heyno et al. (hydrogen peroxide) [13] and by Zhang et al. (singlet oxygen) [14]. Foyer et al. [15] introduce a chloroplast protein belonging to the WHIRLY family and propose that the redox state of the photosynthetic electron transport chain triggers the movement of this protein from the chloroplast to the nucleus where it regulates the gene expression leading to cross tolerance, including light acclimation and immune defence. Gorecka et al. [16] identify novel components for crosstalk of immune reaction-induced signalling networks with two short-term photoprotective mechanisms, ST and NPQ. Trotta et al. [17] further review the increasing evidence for crosstalk between light-induced chloroplast signalling and immune reactions in plants.To allow for adaptation to a changing environment, natural selection of existing genetic variation takes place. Flood, Yin et al. [18] report natural variation in photosystem II protein phosphorylation in the model plant Arabidopsis thaliana and propose a possible role in the adaptation to diverse environments. In addition, Serõdio et al. [19] review the current knowledge of adaptation of macroalgal chloroplasts to life in sea slug following ingestion. Finally, the review by Darko et al. [20] uses selected examples to show how artificial lighting can be used to improve plant growth in agriculture and for production of functional food and materials, whereas Demmig-Adams et al. [21] provide an ecophysiological perspective of light responses in the chloroplast to optimize its function and of the whole plant in a changing environment.This research on light-induced signalling and response is developing in many directions, as reflected by the broad field coverage of the papers of this theme issue. It highlights and summarizes the present knowledge from the individual chloroplast reactions to the variation of the adaptive mechanisms in natural populations and on their agricultural and ecological impacts.     

Intracellular signalling: sphingosine-1-phosphate branches out

Recent studies indicate that sphingosine-1-phosphate - known to be an important signalling molecule in animal cells - is involved in Ca(2+)-dependent signalling in yeast and higher plants, raising the likelihood that it is a universal signalling molecule with a diverse range of functions in eukaryotes.     

Blue light signalling in chloroplast movements

Chloroplast movements are among the mechanisms allowing plants to cope with changes in their environment. Chloroplasts accumulate at illuminated cell areas under weak light while they avoid areas exposed to strong light. These directional responses may be controlled by blue and/or red light, depending on the plant group. In terrestrial angiosperms only the blue light perceived by phototropins is active. The last decade has seen a rapid development of studies on the mechanism of directional chloroplast movements, which started with an identification of the photoreceptors. A forward genetic approach has been used to identify the components which control chloroplast movements. This review summarizes the current state of research into the signalling pathways which lead to chloroplast responses. First, the molecular properties of phototropins are presented, followed by a characterization both of proteins which are active downstream of phototropins and of secondary messengers. Finally, cross-talk between light signalling involved in chloroplast movements and other signalling pathways is discussed.     

Intracellular signalling: PDK1--a kinase at the hub of things

Phosphoinositide-dependent kinase 1 (PDK1) is at the hub of many signalling pathways, activating PKB and PKC isoenzymes, as well as p70 S6 kinase and perhaps PKA. PDK1 action is determined by colocalization with substrate and by target site availability, features that may enable it to operate in both resting and stimulated cells.     

The language of nitric oxide signalling

Nitric oxide (NO) has recently joined the select circle of the ubiquitous molecules of plant signalling networks. Indeed, the last decade has produced a tremendous amount of data that evidence the diversity of physiological situations in which NO is involved in plants and the complexity of NO biology. These data also underline our difficulties in providing simple answers to the cardinal questions of where NO comes from and how the NO message is converted into a physiological response. The identification of NO primary targets and NO-regulated genes provides new opportunities to connect NO biochemistry and NO biology. This review summarises our current understanding of NO signalling, from the generation of the NO message to its execution into a cellular response. The review particularly considers whether and how NO may be responsible for specific signalling in different physiological processes.     

Intracellular signalling as a parallel distributed process

Living cells respond to their environment by means of an interconnected network of receptors, second messengers, protein kinases and other signalling molecules. This article suggests that the performance of cell signalling pathways taken as a whole has similarities to that of the parallel distributed process networks (PDP networks) used in computer-based pattern recognition. Using the response of hepatocytes to glucagon as an example, a procedure is described by which a PDP network could simulate a cell signalling pathway. This procedure involves the following steps: (a) a bounded set of molecules is defined that carry the signals of interest; (b) each of these molecules is represented by a PDP-type of unit, with input and output functions and connection weights corresponding to specific biochemical parameters; (c) a "learning algorithm" is applied in which small random changes are made in the parameters of the cell signalling units and the new network is then tested by a selection procedure in favour of a specific input-output relationship. The analogy with PDP networks shows how living cells can recognize combinations of environmental influences, how cell responses can be stabilized and made resistant to damage, and how novel cell signalling pathways might appear during evolution.     

Intracellular signalling controlling integrin activation in lymphocytes

Since the discovery that integrins at the surface of lymphocytes undergo dynamic changes in their adhesive activity after stimulation through the T-cell receptor or stimulation with chemokines, intensive research has been carried out in an attempt to clarify the signalling events that lead to the activation of integrins. Whereas structural studies have provided us with a vivid picture of the conformational flexibility of integrins, the signalling pathways that regulate these conformational changes (known as inside-out signalling) have been elusive. However, as I discuss here, recent studies have provided new insight into the pathways that control the regulation of integrin activity and the coordination of complex cellular functions, such as the homing of lymphocytes and the formation of an immunological synapse.     

Redox signalling in the chloroplast: structure of oxidized pea fructose-1,6-bisphosphate phosphatase

Sunlight provides the energy source for the assimilation of carbon dioxide by photosynthesis, but it also provides regulatory signals that switch on specific sets of enzymes involved in the alternation of light and dark metabolisms in chloroplasts. Capture of photons by chlorophyll pigments triggers redox cascades that ultimately activate target enzymes via the reduction of regulatory disulfide bridges by thioredoxins. Here we report the structure of the oxidized, low-activity form of chloroplastic fructose-1, 6-bisphosphate phosphatase (FBPase), one of the four enzymes of the Calvin cycle whose activity is redox-regulated by light. The regulation is of allosteric nature, with a disulfide bridge promoting the disruption of the catalytic site across a distance of 20 A. Unexpectedly, regulation of plant FBPases by thiol-disulfide interchange differs in every respect from the regulation of mammalian gluconeogenic FBPases by AMP. We also report a second crystal form of oxidized FBPase whose tetrameric structure departs markedly from D(2) symmetry, a rare event in oligomeric structures, and the structure of a constitutively active mutant that is unable to form the regulatory disulfide bridge. Altogether, these structures provide a structural basis for redox regulation in the chloroplast.     

Intracellular adaptor molecules and AR signalling in the tumour microenvironment

Androgen deprivation therapy is the mainstay for treating advanced prostate cancer. A better understanding in the complexity of the androgen receptor (AR) signalling pathway has highlighted that this form of treatment is not sufficient. Since Huggins and Hodges made their crucial observations on the benefits of castration for prostate cancer, significant progress has been achieved in understanding the importance of the cross-talk between the hormone signalling pathway and the kinase signalling network. We now know that preventing androgen production or ligand binding to the AR does not necessarily mark the end of the road for prostate tumour growth. Emerging evidence suggests that there exists a complex set of compensatory mechanisms which allows growth factors to push the transformed cells into a ‘survival adaptation mode’ within the tumour microenvironment. An increase in autocrine and paracrine cascades of growth factor are the most commonly reported events to correlate with progression of androgen-dependent disease to a disseminated androgen independent state. The mechanism of how growth factors can sustain AR activation when cells are deprived of androgens is unknown. This is due to the lack of information about the critical factors linking the intracellular signalling molecules associated with the downstream AR signalling events triggered by growth factors. The aim of this mini review is to highlight a potentially new insight into how intracellular adaptor molecules activated by growth factors may influence and act as a molecular switch to allow the continuation of AR activity in the presence of therapeutic anti-androgens following chemical or surgical castration.     

Intracellular signalling mechanisms regulating glucose transport in insulin-sensitive tissues

The rate of glucose transport into cells is of fundamental importance in whole body homeostasis and adaptation to metabolic stresses, and this review examines the signalling mechanisms controlling this process. The events that mediate the action of insulin on glucose transport, which is by far the best characterized paradigm for glucose transport regulation, are discussed. There are several excellent reviews on various aspects of this subject, which are referred to while highlighting very recent developments in the field, including the recently described CAP pathway, and emerging mechanisms for feedback regulation of insulin signalling. The manner in which hormonal signalling is modulated by stimuli such as oxidative and osmotic stress is then discussed. The second major physiological event where glucose transport regulation is critical is the contraction of skeletal muscle, due to the large metabolic demands of this activity. The mechanism of this regulation is distinct from that initiated by insulin, and recent developments will be examined that have begun to clarify how contraction stimulates glucose transport in skeletal muscle, including the roles performed by AMP-activated protein kinase and nitric oxide synthase.     

Intracellular signalling by nucleotide receptors in PC12 pheochromocytoma cells

The effect of extracellular ATP was studied in PC12 cells, a neurosecretory line that releases ATP. The addition of micromolar concentrations of ATP to PC12 cells evoked a transient increase in the cytosolic free Ca²⁺ concentration ([Ca²⁺]_i), as measured with the Ca²⁺-dye fura 2. AMP and adenosine were without effect, ruling out the involvement of P₁ receptors in mediating this response. The increase in [Ca²⁺]_i was reduced in calcium-free media and virtually eliminated by the addition of EGTA, suggesting that calcium influx was the primary response initiated by extracellular ATP. Nucleotide triphosphates such as UTP and, to a lesser degree, ITP also evoked an increase in [Ca²⁺]_i while GTP and CTP had little effect. In order to identify the receptor subtype mediating this response, the efficacy of ATP and ATP cogeners was assessed. The rank order potency was ATP > adenosine 5′-[γ-thio]triphosphate > ADP > 2-methylthioadenosine triphosphate (2-MeSATP) ～ adenosine 5′-[β-thio]diphosphate ? adenosine 5′-[αβ-methylene] triphosphate, adenosine 5′-[βγ-imido]triphosphate. This profile is not characteristic of either the P_2X or the conventional P_2Y receptors. The Ca²⁺ response exhibited desensitization to ATP that was dependent on the extracellular metabolism of ATP. UTP was equally effective in desensitizing the response. ATP, UTP, ITP, and to a much lesser extent 2MeSATP increased inositol phosphate production in a dose-dependent manner, suggesting receptor coupling to phosphatidylinositol-specific phospholipase C. These data are consistent with the view that PC12 cells express a class of non-P_2Y nucleotide receptors (P_2N) that mediate calcium influx and the accumulation of inositol phosphates. © 1993 Wiley-Liss, Inc.     

Intracellular signalling pathways induced by chemokines in natural killer cells.

Chemokines are small peptides involved in the recruitment of various cell types into inflammatory sites. They are divided into four sub-families depending on the presence of amino acids separating the cysteine residues in their N-terminal region. These are the alpha (CXC), beta (CC), gamma (C) and delta (CX)C) chemokines. In addition, five CXC chemokine (CXCR1-5), nine CC chemokine (CCR1-9), one C chemokine (XCR1) and one C-X3C chemokine (CX3CR1) receptors have been identified. These receptors belong to the seven transmembrane spanning domain family, and are coupled to the heterotrimeric guanine nucleotide binding (G) proteins. Chemokines activate various immune cells, and in particular the anti-viral/anti-tumour effectors, the natural killer (NK) cells by activating members of the heterotrimeric G proteins. The importance of the family of chemokines is highlighted by the ability of its members to inhibit the replication of HIV-1 strains in CD4+ cells, where chemokine receptors act as HIV-1 co-receptors. This review discusses the intracellular signalling pathways induced by chemokines in NK and other cell types, and the relationships to HIV-1 signalling in these cells.     

Intracellular signalling mechanisms regulating glucose transport in insulin-sensitive tissues (review).

The rate of glucose transport into cells is of fundamental importance in whole body homeostasis and adaptation to metabolic stresses, and this review examines the signalling mechanisms controlling this process. The events that mediate the action of insulin on glucose transport, which is by far the best characterized paradigm for glucose transport regulation, are discussed. There are several excellent reviews on various aspects of this subject, which are referred to while highlighting very recent developments in the field, including the recently described CAP pathway, and emerging mechanisms for feedback regulation of insulin signalling. The manner in which hormonal signalling is modulated by stimuli such as oxidative and osmotic stress is then discussed. The second major physiological event where glucose transport regulation is critical is the contraction of skeletal muscle, due to the large metabolic demands of this activity. The mechanism of this regulation is distinct from that initiated by insulin, and recent developments will be examined that have begun to clarify how contraction stimulates glucose transport in skeletal muscle, including the roles performed by AMP-activated protein kinase and nitric oxide synthase.     

Intracellular signalling of epinephrine in rat hepatocytes during fetal development and hepatic regeneration

The changes in intracellular calcium concentration and IP₃ production after the addition of epinephrine were analysed in adult, fetal (20th–22nd day of intrauterine life), and regenerating rat hepatocytes (4 h–24 h after partial hepatectomy) to determine whether the signal transduction is the same in quiescent proliferating and differentiating cells.The epinephrine treatment causes a significative cytosolic calcium transient in hepatocytes isolated in the last day of fetal life (22-day old) and in the early stage of regeneration (4 h). This effect is not significant in the previous stage of fetal life (20-day old) and at the onset of M phase of cell cycle after partial hepatectomy (24 h).[³H]myo inositol incorporation into IP₃ and IP₄ is higher in 20 day fetal and regenerating hepatocytes with respect to the control. In these cells the epinephrine does not affect basal level of IP₃ and IP₄, while it causes a substantial increase of these inositol phosphates in adult hepatocytes.[³H]myo inositol incorporation into PIP₂ is very low at the 20th day of fetal life. Epinephrine has no effect on this parameter in fetal and regenerating hepatocytes.Our results show that the epinephrine signal is mediated differently in proliferating and in quiescent hepatocytes.     

Intracellular distribution of a speech/language disorder associated FOXP2 mutant

Although a mutation (R553H) in the forkhead box (FOX)P2 gene is associated with speech/language disorder, little is known about the function of FOXP2 or its relevance to this disorder. In the present study, we identify the forkhead nuclear localization domains that contribute to the cellular distribution of FOXP2. Nuclear localization of FOXP2 depended on two distally separated nuclear localization signals in the forkhead domain. A truncated version of FOXP2 lacking the leu-zip, Zn2+ finger, and forkhead domains that was observed in another patient with speech abnormalities demonstrated an aggregated cytoplasmic localization. Furthermore, FOXP2 (R553H) mainly exhibited a cytoplasmic localization despite retaining interactions with nuclear transport proteins (importin alpha and beta). Interestingly, wild type FOXP2 promoted the transport of FOXP2 (R553H) into the nucleus. Mutant and wild type FOXP2 heterodimers in the nucleus or FOXP2 R553H in the cytoplasm may underlie the pathogenesis of the autosomal dominant speech/language disorder.