Amazonian biodiversity: assessing conservation priorities with taxonomic data

Data from 3991 records of museum collections representing 421 species of plants, arthropods, amphibians, fish, and primates were analyzed with GIS to identify areas of high species diversity and endemism in Amazonia. Of the 472 1 × 1° grid cells in Amazonia, only nine cells are included in the highest species diversity category (43–67 total species) and nine in the highest endemic species diversity category (4–13 endemic species). Over one quarter of the grid cells have no museum records of any of the organisms in our study. Little correspondence exists between the centers of species diversity identified by our collections-based data and those areas recommended for conservation in an earlier qualitative study of Amazonian biodiversity. Museum collections can play a vital role in identifying species-rich areas for potential conservation in Amazonia, but a concerted and structured effort to increase the number and distribution of collections is needed to take maximum advantage of the information they contain.     

A note on amphibian decline in a central Amazonian lowland forest

The massive reductions in amphibian populations taking place across the globe are unprecedented in modern times. Within the Neotropics, the enigmatic decline of amphibians has been considered predominantly a montane phenomenon; however, recent evidence suggests amphibian and reptile populations in lowland forests in Central America are waning as well. Unfortunately, very little baseline data are available for conducting large scale time series studies in order to further investigate and confirm declines in the lowland forests of tropical America. Here we compare leaf litter herpetofauna abundance at sites in the Central Amazon, sampled first in 1984–1985 and again in 2007. We find no evidence for a decline in abundance or biomass of amphibians over a period of 22 years at this site. This conclusion differs markedly from the decline of 75% in amphibian populations over 35 years at a lowland site in Costa Rica. To explore potential declines in lowland Neotropical amphibian populations in detail, we suggest that existing baseline data be comprehensively compiled and analyzed for previously sampled sites and that these sites be re-sampled using comparable methodologies.     

Early Inhabitants of the Amazonian Tropical Rain Forest: A Study of Humans and Environmental Dynamics

Early Inhabitants of the Amazonian Tropical Rain Forest:. Study of Humans and Environmental Dynamics . Santiago Mora. Pittsburgh: University of Pittsburgh Press, 2003. 211 pp.     

Roots of pioneer trees in the Amazonian rain forest

. On low fluvial terraces of the Caquetá River, Araracuara region, Colombia, tree root systems were examined with regard to their structure, underground stratification and biomass distribution. Excavations of skeleton roots and microscopic observation of terminal fine roots included ten species belonging to the Cecropia, Vismia, Miconia, Goupia, Clathrotropis and Brosimum genera. Roots of particular species varied in the external features of their periderm and structure of freshly cut slash. Coarse skeleton roots differed in the shape and position of the plagiotropic branches and positively geotropic taproots or sinkers. None of the observed species could be identified as a shallow-rooted tree, in spite of the general fine root concentration in the upper soil horizon. In the two seasons of study, the terminal roots displayed prevailingly secondary anatomical structure and did not maintain much primary anatomical tissue in their apices. Neither ectomycorrhizas nor endomycorrhizas were detected in the samples. In a set of regeneration stages the amount of tree roots linearly increased with the age of growth. However, fine roots below 2 mm in diameter shared 80-90% of all roots in the upper 20 cm layer of all sample plots. In an old-growth forest, the total tree root biomass amounted to 39 ton/ha, thus being comparable to the underground biomass observed in similar tropical forests.     

Wildfires in bamboo-dominated Amazonian forest: impacts on above-ground biomass and biodiversity

Fire has become an increasingly important disturbance event in south-western Amazonia. We conducted the first assessment of the ecological impacts of these wildfires in 2008, sampling forest structure and biodiversity along twelve 500 m transects in the Chico Mendes Extractive Reserve, Acre, Brazil. Six transects were placed in unburned forests and six were in forests that burned during a series of forest fires that occurred from August to October 2005. Normalized Burn Ratio (NBR) calculations, based on Landsat reflectance data, indicate that all transects were similar prior to the fires. We sampled understorey and canopy vegetation, birds using both mist nets and point counts, coprophagous dung beetles and the leaf-litter ant fauna. Fire had limited influence upon either faunal or floral species richness or community structure responses, and stems <10 cm DBH were the only group to show highly significant (p = 0.001) community turnover in burned forests. Mean aboveground live biomass was statistically indistinguishable in the unburned and burned plots, although there was a significant increase in the total abundance of dead stems in burned plots. Comparisons with previous studies suggest that wildfires had much less effect upon forest structure and biodiversity in these south-western Amazonian forests than in central and eastern Amazonia, where most fire research has been undertaken to date. We discuss potential reasons for the apparent greater resilience of our study plots to wildfire, examining the role of fire intensity, bamboo dominance, background rates of disturbance, landscape and soil conditions.     

Litterflow chemistry and nutrient uptake from the forest floor in northwest Amazonian forest ecosystems

Samples of the fraction of net rainfall passing through the forest floor collected at monthly intervals in four pristine forests in Colombian Amazonia, during the period between 1995–1997 were analysed for solute concentrations to estimate the element fluxes from the forest floor into the mineral soil and root nutrient uptake from these forest floors. Results were compared with inputs by throughfall, stemflow, litterfall and fine root decay. Element concentrations were tested for their relationship with litterflow amounts, rainfall intensity and length of the antecedent dry period and differences in element fluxes between ecosystems were assessed. Concentrations of elements in litterflow followed a similar pattern as those in throughfall, which indicates that element outputs from the forest floor are strongly related to those inputs in throughfall. In the forests studied, the average concentrations of elements as K, Mg, orthoP and the pH of the litterflow decreased relative to that in throughfall in most events, while the concentration of elements such as dissolved organic carbon, H, SO₄ and Si increased in litterflow from these forests. Element concentrations in litterflow showed a poor correlation with variables such as litterflow amounts, rainfall intensity and antecedent dry period, except for K which showed a significant correlation (p>0.95) with analysed variables in all forests. Outputs were significantly different between forests (p>0.95); these fluxes, which particularly concerned cations, being the largest in the flood plain, while for anions outputs increased from the flood plain to the sedimentary plain. After adding the nutrient contributed by litter decomposition and fine root decay, the net outputs of main elements from the forest floors were still smaller than inputs by net precipitation (throughfall+stemflow) indicating that the litter layers clearly acted as a sink for most nutrients. Accordingly, the element balances confirm that the forest floors acted as a sink for nutrients coming in by throughfall, stemflow, litterfall and fine root decomposition. P, Mg and N appeared to be the most limiting nutrients and the forests studied efficiently recycled these nutrients.     

Litterfall and nitrogen turnover in an Amazonian blackwater inundation forest

In 1976/77 energy flow and nutrient cycling in an Amazonian blackwater inundation forest were studied. The major part of the litter biomass turnover occurred during the emersion phase. 95% decomposition rate for nitrogen was measured with 15 mm mesh litter bags and was 4.7 years. Over 30 per cent of the annual leaf-fall was decomposed by soil-dwelling arthropods.     

Low stocks of coarse woody debris in a southwest Amazonian forest

The stocks and dynamics of coarse woody debris (CWD) are significant components of the carbon cycle within tropical forests. However, to date, there have been no reports of CWD stocks and fluxes from the approximately 1.3 million km² of lowland western Amazonian forests. Here, we present estimates of CWD stocks and annual CWD inputs from forests in southern Peru. Total stocks were low compared to other tropical forest sites, whether estimated by line-intercept sampling (24.4 ± 5.3 Mg ha⁻¹) or by complete inventories within 11 permanent plots (17.7 ± 2.4 Mg ha⁻¹). However, annual inputs, estimated from long-term data on tree mortality rates in the same plots, were similar to other studies (3.8 ± 0.2 or 2.9 ± 0.2 Mg ha⁻¹ year⁻¹, depending on the equation used to estimate biomass). Assuming the CWD pool is at steady state, the turnover time of coarse woody debris is low (4.7 ± 2.6 or 6.1 ± 2.6 years). These results indicate that these sites have not experienced a recent, large-scale disturbance event and emphasise the distinctive, rapid nature of carbon cycling in these western Amazonian forests.     

Abundance and cover of ground herbs in an Amazonian rain forest

In a 1-ha plot in an unflooded moist tropical forest in Reserva de Producción Faunística Cuy abeno in Amazonian Ecuador, 96 species of vascular herbaceous plants were found rooted in the ground; they were all perennials; 25 species were pteridophytes, representing 11 families, 71 species (14 families) were angiosperms. Araceae, Marantaceae, and Poaceae were the most important angiosperm families. The total abundance of the ground herbs was 10 960 individuals, the total cover was 250 m², or 2.5% of the 1-ha plot. Species of ground herbs exhibit two major life-form strategies: the obligate terrestrial species (59%) are restricted to the ground; the facultative terrestrial species (41 %) have climbing and epiphytic individuals as well. Difference in life-form strategy as well as difference in edaphic specialization along a topographic gradient are two factors that may enhance the number of coexisting species within the 1-ha sample plot.     

Uptake of water by lateral roots of small trees in an Amazonian Tropical Forest

A pulse chase technique was used to determine depth and breath of plant water uptake in an Amazonian evergreen forest. Two 2×2 m² plots were irrigated with deuterated water. The deuterium pulse, measured as D values of soil and plant sap water, was followed in the soil water profile and in stem water of small trees inside and up to 12 m away from the irrigated plots. The deuterium pulse percolation rate was measured to be approximately 0.25 m/month and similar to a previous study in central Amazon. There was little horizontal movement of label through the soil profile; allowing us to conclude that any evidence of label in plants away from the irrigation plots implies the presence of their roots inside the irrigation plots. The bulk of label uptake occurred in plants inside the irrigation plots. However, there were a few individuals as far as 10 m away picking up the label from the irrigation plots. This labeling pattern leads to the conclusion that small trees may have a core of water absorbing roots close to their main trunk, with some roots meandering far from their main trunk.     

Growth and mortality of trees in Amazonian tropical rain forest in Ecuador

Abstract. Structural changes are analysed in four samples representing 4 ha, two line transects and two hectare plots, of Amazonian tropical lowland rain forest in northern Ecuador. Only trees with a DBH ≥ 10 cm were included. A sample of floodplain forest in Añangu represents the largest turnover found in tropical forests (stand half-life = 23 yr). The line transect and hectare plot both of tierra firme forest in Añangu have the same turnover (37 yr) and were balanced for death and in-growth of both individuals and wood (basal area). The 1-ha tierra firme sample in Cuyabeno had a turnover of 67 yr and was in a growing phase. The floodplain line transect in Añangu was in a phase of structural breakdown. However, the floodplain line transect had the largest growth of basal area per tree (23.4 cm²/yr). The tierra firme samples had a growth of 9.6, 10.1, and 13.6 cm²/yr. Most of the dead trees fell with some uprooting in three of the four samples. However, no significant difference in the distribution of mode of death was found between the four samples. Death was independent of topography and the dead trees were randomly distributed. As the trees grow up they occupy more space and larger trees (DBH ≥ 15 cm) become more uniformly distributed, whereas smaller trees (DBH ≤ 15 cm) were randomly distributed. Our study confirms that plots of 1 ha are not sufficient to include representative samples of different stages of forest structure.     

Soil acidity and nutrient deficiency in central Amazonian heath forest soils

Experiments were carried out to test the effects of liming and nutrient additions on plant growth and soil processes such as C and N mineralisation in three contrasting forest types in central Amazonia: the stunted facies of heath forest (SHF), the tall facies of heath forest (THF) and the surrounding lowland evergreen rain forest (LERF). Calcium-carbonate additions increased soil respiration in the field plots in the SHF; in laboratory incubations, soil respiration was higher in the SHF when soils were fertilised with N, and in THF and LERF after S additions. The addition of N alone or in different combinations generally induced a net immobilisation of soil N. Net nitrification increased during the incubation in SHF and THF soils fertilised with N+P, and in LERF soils fertilised with either N, or P, or CaCO₃. In a field experiment using ingrowth bags, a higher fine root production was observed in all forest types when bags were fertilised with CaCl₂ or CaCO₃, suggesting that Ca may be a limiting nutrient in these soils. Calcium-carbonate addition in a glasshouse bioassay experiment with rice showed an overall positive effect on the survival and growth of the seedlings. In other treatments where soil pH was not raised, the rice showed acute toxicity symptoms, poor root and shoot growth and high mortality. Similar results were yielded in a field experiment, using naturally established seedlings in the field plots in SHF, THF and LERF. It is concluded that the acute H⁺ ion toxicity is a major growth-limiting factor for non-adapted plants in heath forest soils in central Amazonia.     

Glutathione peroxidase activity in insects: A reassessment

In vertebrate species, cytotoxic H₂O₂ and other lipid or organic hydroperoxides (ROOH) formed in aerobic metabolism are removed by a selenoprotein, glutathione peroxidase (GPOX). The GPOX activity in most rat tissues ranges from 100 to 1,000 units (1 unit = 1 nmol NADPH oxidized·mg protein^?1·min^?1), except for muscles (20–30 units). In contrast, GPOX activities of two strains of the housefly (Musca domestica), cabbage looper (Trichoplusia ni), southern armyworm (Spodoptera eridania), and black swallowtail butterfly (Papilio polyxenes), were found to be in the range 2–12 units. Trivial GPOX activity was detected in the confused flour beetle (Tribolium confusum). In the earthworm (Lumbricus terrestris), banana slug (Ariolimax columbianus), and market squid (Loligo opalescens), the GPOX activity ranged from 1 to 5 units. Tissue selenium concentrations were about 500–1,000 ppb for adult M. domestica, 600 ppb in T. confusum, 32 ppb in T. ni, 17 ppb in S. eridania, and 31 ppb in P. polyxenes larvae. The form of selenium incorporated at such high levels in tissues of invertebrates such as M. domestica remains an unresolved issue. Peroxidase activity of non-selenium glutathione-S-transferase (GT) against ROOH may compensate for the low GPOX activity. Catalase (CAT) has high activity and wide subcellular distribution in insects. This may be an evolutionary adaptation to GT's inability to catalyze the reduction of H₂O₂. The GT's peroxidase and CAT activities were not assessed for other invertebrate species, and warrants an investigation due to their reported low GPOX levels.     

Tropical forest recovery: legacies of human impact and natural disturbances

Land-use history interacts with natural forces to influence the severity of disturbance events and the rate and nature of recovery processes in tropical forests. Although we are far from an integrated view of forest recovery processes, some generalizations can be made. Recovery of forest structure and composition is relatively rapid following disturbances that primarily impact forest canopies, such as hurricanes. Recovery is considerably slower following disturbances that heavily impact soils as well as aboveground vegetation, such as bulldozing, heavy or long-term grazing, and severe fires, often with long-lasting effects on species composition. The landscape matrix plays a critical role in local recovery processes. Proximity of disturbed areas to remnant forest patches promotes more rapid recovery, which depends heavily on seed dispersal. Recovery of aboveground biomass is constrained by soil fertility and texture across regions as well as across soil types within a region. Restoration of soil fertility may be a prerequisite for forest recovery on sites with severely degraded soils. Despite evidence of rapid forest recovery following large-scale deforestation, many degraded areas of today's tropics will require human assistance to recover forest structure, species composition, and species interactions typical of mature tropical forests.