Biodiversitätsforschung – wohin geht die Reise?

Biodiversity and biodiversity politics Extrapolations for a range of indicators suggest that based on current trends, pressures on biodiversity will continue to increase (Global Biodiversity Outlook 4, 2014). Since services of nature, like fertile soil, clear water and clean air are achieved by consortia of organisms rather than by individual species, they are already endangered. This holds, in spite of the fact, that only 10% of the earth's organisms are known to science and that therefore the loss caused by global change cannot be reliably quantified. Today, science develops new methods for recording consortia of coexisting organisms in a habitat. With the Convention on Biological Diversity, biodiversity has become a matter of politics which is welcome with respect to species and habitat conservation, but the concern of biopiracy creates bureaucratic hurdles hindering research. The most recent achievement is IPBES (Intergovernmental Platform on Biodiversity and Ecosystem Services, Bonn), which strives to bring more science into biodiversity politics.     

Aquakultur – quo vadis?!

Aquaculture – quo vadis? Aquaculture is more than just fish production; it is a globally active sector of the food production industry. The production methods interact in different degrees with the environment, resulting in possible negative impact. Through enhancement of the production systems as well as utilized resources, such influence can be controlled and minimized. This includes the amount of water consumption, nutrient efficiency and thus nutrient excretion from the production systems. An optimization of the culture conditions has direct benefits for animal welfare, diseases resistance, product quality and consequently supporting the productivity of the aquaculture enterprises. Further support and networking of the stakeholders involved in education, research and private companies within the respective fields is required to reach the overall goal of an ecologically and economically sustainable aquaculture.     

Fadenwürmer – fade Würmer?

Nematodes – there is more to it … Nematodes play a central role – not only in a negative way as dreaded parasites of humans, animals and plants, where they may be harmful in terms of health and economy. The majority of nematodes turn out to be highly beneficial: Firstly, they are a vital part of the food web and by this indispensably involved in nutrient cycles. On the other hand, we increasingly make use of nematodes in biological control of pest organisms, in the ecotoxicological assessment of soils and sediments and as excellent model organisms in a broad range of different research fields.     

Gliotoxin – bane or boon?

Gliotoxin (GT) is the most important epidithiodioxopiperazine (ETP)‐type fungal toxin. GT was originally isolated from Trichoderma species as an antibiotic substance involved in biological control of plant pathogenic fungi. A few isolates of GT‐producing Trichoderma virens are commercially marketed for biological control and widely used in agriculture. Furthermore, GT is long known as an immunosuppressive agent and also reported to have anti‐tumour properties. However, recent publications suggest that GT is a virulence determinant of the human pathogen Aspergillus fumigatus. This compound is thus important on several counts – it has medicinal properties, is a pathogenicity determinant, is a potential diagnostic marker and is important in biological crop protection. The present article addresses this paradox and the ecological role of GT. We discuss the function of GT as defence molecule, the role in aspergillosis and suggest solutions for safe application of Trichoderma‐based biofungicides.     

Adipositas – eine Bürde der Evolution?

Obesity – a consequence of evolution? The high obesity rates are the result of a dramatic mismatch between current environment and a human body evolved in the environment of our evolutionary adaptedness. Various evolutionary hypotheses try to explain this relationship. Natural and sexual selection shaped our gene pool towards an optimal adaptation to these environments and life circumstances. Our recent obesogenic environment differs dramatically from that in which we evolved.     

Dinoflagellaten – ein Dauerexperiment der Evolution?

Dinoflagellates play important roles in marine food webs, both as primary producers and as heterotrophic consumers. They produce spectacular phenomena like marine bioluminescence and red tides, and are major components of coral reefs. Members of the group can also synthesize some of the most toxic biogenic compounds currently known. Dinoflagellate's nuclei are extremely large and biochemically unique, while mitochondrial genomes are very small. The plastid diversity of dinoflagellates is also unique: only about half of the species in the group are photosynthetic, but the origin of their plastids is often different. As a consequence dinoflagellate plastids have very diverse physiological and biochemical characteristics. Some of the most complex morphological constructs known in unicellular organisms are found in this group. These include ?harpoons“, used to capture prey, and ?eyes“, that contain substructures reminiscent of lenses, corneas and retinas.     

Brachiopod caeca – a respiratory role?

Recently the author presented data which supported the suggestion (Owen & Williams 1969) that the brachiopod caeca can inhibit boring organisms and store excess nutrients (Curry 1983). In the light of this work it is appropriate to describe and discuss an additional function which has been proposed for the caeca, especially as the data appear in a zoological journal which may not otherwise come to the attention of brachiopod palaeontologists.     

‘On being the right size’ – Do aliens follow the rules?

Aim

To assess whether mammalian species introduced onto islands across the globe have evolved to exhibit body size patterns consistent with the ‘island rule,’, and to test an ecological explanation for body size evolution of insular mammals.

Location

Islands worldwide.

Methods

We assembled data on body mass, geographical characteristics (latitude, maximum elevation) and ecological communities (number of mammalian competitors, predators and prey) for 385 introduced populations across 285 islands, comprising 56 species of extant, non‐volant mammals. We used linear regression, ANCOVA and regression tree analyses to test whether introduced populations of mammals exhibit the island rule pattern, whether the degree of body size change increased with time in isolation and whether residual variation about the general trend can be attributed to the geographical and ecological characteristics of the islands.

Results

Introduced populations follow the predicted island rule trend, with body size shifts more pronounced for populations with greater residence times on the islands. Small mammals evolved to larger body sizes in lower latitudes and on islands with limited topographic relief. Consistent with our hypothesis on the ecology of evolution, body size of insular introduced populations was influenced by co‐occurring species of mammalian competitors, predators and prey.

Conclusion

The island rule is a pervasive pattern, exhibited across a broad span of geographical regions, taxa, time periods and, as evidenced here, for introduced as well as native mammals. Time in isolation impacts body size evolution profoundly. Body size shift of introduced mammals was much more pronounced with increasing residence times, yet far less than that exhibited by native, palaeo‐insular mammals (residence times > 10,000 years). Given the antiquity of many species introductions, it appears that much of what we view as the natural character and ecological dynamics of recent insular communities may have been rendered artefacts of ancient colonizations by humans and commensals.     

FtsK – a bacterial cell division checkpoint?

FtsK is a multifunctional, multidomain protein that acts to co-ordinate chromosome unlinking, segregation and cell division. In this issue of Molecular Microbiology, the report by Dubarry et al. reveals new insight into the surprisingly complex relationship between the different activities of FtsK. The new study makes extensive use of fusion proteins to highlight the role of the FtsK 'linker' domain in helping to co-ordinate these processes. This, taken together with previous studies, suggests that FtsK is intimately involved in septum constriction, physically contacting several other divisome proteins. Further, it is attractive to speculate that FtsK can regulate the late stages of septation to act as a checkpoint to ensure DNA is fully cleared from the septum before it is allowed to close, as well as being the driving force to unlink the chromosomes and segregate the DNA away from the septum.     

Death by transposition – the enemy within?

Here we present and develop the hypothesis that the derepression of endogenous retrotransposable elements (RTEs) – “genomic parasites” – is an important and hitherto under‐unexplored molecular aging process that can potentially occur in most tissues. We further envision that the activation and continued presence of retrotransposition contribute to age‐associated tissue degeneration and pathology. Chromatin is a complex and dynamic structure that needs to be maintained in a functional state throughout our lifetime. Studies of diverse species have revealed that chromatin undergoes extensive rearrangements during aging. Cellular senescence, an important component of mammalian aging, has recently been associated with decreased heterochromatinization of normally silenced regions of the genome. These changes lead to the expression of RTEs, culminating in their transposition. RTEs are common in all kingdoms of life, and comprise close to 50% of mammalian genomes. They are tightly controlled, as their activity is highly destabilizing and mutagenic to their resident genomes.     

ROC Volumes – Should They Be Used?

Invited comment on Alonzo, T.A. and Nakas, C.T. (2007). Comparison of ROC umbrella volumes with an application to the assessment of lung cancer diagnostic markers. Biometrical Journal 49, 654-664. Issues remain as to the appropriateness of volumes as summary measures of accuracy when distinguishing between multiple disease classes and when comparing accuracy of tests.     

N for AsN – O for StrOcture? A strand–loop–strand motif for prokaryotic O‐glycosylation

So far, it has not been possible to identify a general sequence motif for O-glycosylation in bacteria. In this issue, Charbonneau et al. (2012) demonstrate why O-glycosylation is mediated by a 13-residue strand-loop-strand motif which is part of a 19-residue imperfect repeat in the passenger domain of bacterial autotransporters. This motif provides a convenient 'glycosylation cassette' and raises intriguing questions about the structural regulation of the glycosylation pathway.