Exploring the community assembly of subalpine meadow communities based on functional traits and community phylogeny

Aims The community assembly has been a prominent issue in community ecology. This work was intended to explore the mechanisms of the species coexistence and biodiversity in communities. Our objective was to explore the mechanisms of community assembly in subalpine meadow plant communities along slope gradients in Gannan Tibetan Autonomous Prefecture, Gansu Province, Northwest China.Methods We selected five slope-oriented plots to construct a super-tree representing the species pool. We surveyed the leaf functional traits and soil environmental factors in different slopes. Then we tested the phylogenetic signal of leaf dry matter content (LDMC), specific leaf area (SLA), leaf nitrogen content (LNC) and leaf phosphorus content (LPC).Important findings The changes of slope aspect had significant influence on soil water content (SWC) and soil nutrient content. Most of the plants leaf functional traits had significant difference along different slope aspects. The LDMC was higher in south and southwest slope than north slope, while SLA, LNC and LPC were relatively high in north and northwest slope. The LPC showed feeble phylogenetic signal, while LDMC, SLA, LNC did not have a significant phylogenetic signal. With changes in the slope aspect from south to north, community phylogenetic structure shifted from over-dispersion to clustered dispersion. In south and southwest slope, habitat filtering was the driving force for community assembly. Interspecific competition was the main driving factor for community assembly in north and northwest slope aspects. But in west slope, two indices showed contrary consequence. This means the process of community assembly in west slope was more complicated and its phylogenetic index may be the result of several mechanisms working together.     

Community assembly,functional traits,and phylogeny in Himalayan river birds

Heterogeneity in riverine habitats acts as a template for species evolution that influences river communities at different spatio‐temporal scales. Although birds are conspicuous elements of these communities, the roles of phylogeny, functional traits, and habitat character in their niche use or species'' assembly have seldom been investigated. We explored these themes by surveying multiple headwaters over 3000 m of elevation in the Himalayan Mountains of India where the specialist birds of montane rivers reach their greatest diversity on Earth. After ordinating community composition, species traits, and habitat character, we investigated whether river bird traits varied with elevation in ways that were constrained or independent of phylogeny, hypothesizing that trait patterns reflect environmental filtering. Community composition and trait representation varied strongly with increasing elevation and river naturalness as species that foraged in the river/riparian ecotone gave way to small insectivores with direct trophic dependence on the river or its immediate channel. These trends were influenced strongly by phylogeny as communities became more clustered by functional traits at a higher elevation. Phylogenetic signals varied among traits, however, and were reflected in body mass, bill size, and tarsus length more than in body size, tail length, and breeding strategy. These variations imply that community assembly in high‐altitude river birds reflects a blend of phylogenetic constraint and habitat filtering coupled with some proximate niche‐based moulding of trait character. We suggest that the regional co‐existence of river birds in the Himalaya is facilitated by this same array of factors that together reflect the highly heterogeneous template of river habitats provided by these mountain headwaters.     

基于功能性状及系统发育的乌鲁木齐达坂城山区地衣群落构建机制

选取达坂城山区地衣群落为研究对象,在野外设置了30个样方,调查样方内地衣物种。利用分子标记构建系统发育树,检验功能性状的系统发育信号,计算地衣群落净谱系亲缘关系指数(net relatedness index,NRI)和最近种间亲缘关系指数(nearest taxon index,NTI),探讨地衣群落构建机制,结合典范对应分析(CCA)等方法探讨达坂城山区地衣群落构建的主要环境驱动因子。结果表明：达坂城山区调查发现地衣共有111种,隶属14目、25科、48属。生长形式、光生物类型、繁殖方式、繁殖结构和基物类型5种功能性状均具有显著的系统发育信号(P<0.05),具有谱系保守性。不同海拔梯度群落系统发育结构不同,在低海拔区域,环境干旱,具有干扰,谱系随机至弱发散结构,环境过滤和相似性限制共同作用于群落;在中海拔区域,湿度适中,风速低,人为干扰较弱,地衣群落的谱系结构聚集,环境过滤在群落中起主导作用;而在高海拔区域,环境湿度高,风速强,无人为干扰,群落谱系发散,相似性限制在群落中起主导作用。其中,海拔和物种丰富度呈显著正相关,风速和湿度对系统发育指数有显著影响,海拔、湿度、风速和人为干扰对部分功能性状有显著影响。海拔、湿度和风速作为主要的环境筛影响研究区地衣群落构建过程。     

Limiting similarity and functional diversity along environmental gradients

Recent developments in community models emphasize the importance of incorporating stochastic processes (e.g. ecological drift) in models of niche‐structured community assembly. We constructed a finite, spatially explicit, lottery model to simulate the distribution of species in a one‐dimensional landscape with an underlying gradient in environmental conditions. Our framework combines the potential for ecological drift with environmentally‐mediated competition for space in a heterogeneous environment. We examined the influence of niche breadth, dispersal distances, community size (total number of individuals) and the breadth of the environmental gradient on levels of species and functional trait diversity (i.e. differences in niche optima). Three novel results emerge from this model: (1) niche differences between adjacent species (e.g. limiting similarity) increase in smaller communities, because of the interaction of competitive effects and finite population sizes; (2) immigration from a regional species pool, stochasticity and niche‐assembly generate a bimodal distribution of species residence times (‘transient’ and ‘resident’) under a heterogeneous environment; and (3) the magnitude of environmental heterogeneity has a U‐shaped effect on diversity, because of shifts in species richness of resident vs. transient species. These predictions illustrate the potential importance of stochastic (although not necessarily neutral) processes in community assembly.     

Competitive interactions between forest trees are driven by species' trait hierarchy, not phylogenetic or functional similarity: implications for forest community assembly

The relative importance of competition vs. environmental filtering in the assembly of communities is commonly inferred from their functional and phylogenetic structure, on the grounds that similar species compete most strongly for resources and are therefore less likely to coexist locally. This approach ignores the possibility that competitive effects can be determined by relative positions of species on a hierarchy of competitive ability. Using growth data, we estimated 275 interaction coefficients between tree species in the French mountains. We show that interaction strengths are mainly driven by trait hierarchy and not by functional or phylogenetic similarity. On the basis of this result, we thus propose that functional and phylogenetic convergence in local tree community might be due to competition-sorting species with different competitive abilities and not only environmental filtering as commonly assumed. We then show a functional and phylogenetic convergence of forest structure with increasing plot age, which supports this view.     

不同纬度植物群落系统发育与功能性状结构研究

研究植物群落系统发育和功能性状结构有助于了解植物多样性维持机制及物种间的亲缘关系。甘肃省地理环境复杂,显著而多变的气候梯度形成了区域植被和环境差异,丰富了栖息地类型,具有显著的纵向连通性和纬度隔离性,以甘肃省典型纬度梯度植物群落为研究对象,通过对其进行群落学调查和功能性状测定,计算净亲缘关系指数(Net relatedness index, NRI)和平均成对性状距离(Mean pairwise trait distance, PW)来分析植物群落系统发育结构和功能性状格局对不同纬度的响应。结果表明：(1) Shannon-Weiner多样性指数,物种丰富度,谱系α多样性指数表现出随纬度增加而显著降低的变化趋势(P<0.05),Pielou均匀度指数随纬度的升高没有显著的变化趋势;(2)系统发育结构在高、低纬度上趋于发散状态(NRI<0),在中纬度上又表现出聚集(NRI>0)的谱系结构,表明种间竞争作用减弱,环境过滤作用逐渐增强,随纬度继续升高相似性限制作用在物种聚集过程中占优势;而群落的功能性状结构随着纬度增加表现出与谱系结构相反的状态,因此植物群落的系统发育和功能...     

The ecology of differences: assessing community assembly with trait and evolutionary distances

Species enter and persist in local communities because of their ecological fit to local conditions, and recently, ecologists have moved from measuring diversity as species richness and evenness, to using measures that reflect species ecological differences. There are two principal approaches for quantifying species ecological differences: functional (trait‐based) and phylogenetic pairwise distances between species. Both approaches have produced new ecological insights, yet at the same time methodological issues and assumptions limit them. Traits and phylogeny may provide different, and perhaps complementary, information about species' differences. To adequately test assembly hypotheses, a framework integrating the information provided by traits and phylogenies is required. We propose an intuitive measure for combining functional and phylogenetic pairwise distances, which provides a useful way to assess how functional and phylogenetic distances contribute to understanding patterns of community assembly. Here, we show that both traits and phylogeny inform community assembly patterns in alpine plant communities across an elevation gradient, because they represent complementary information. Differences in historical selection pressures have produced variation in the strength of the trait‐phylogeny correlation, and as such, integrating traits and phylogeny can enhance the ability to detect assembly patterns across habitats or environmental gradients.     

Variation in the sublittoral macrozoobenthos of the Baltic Sea along environmental gradients: A functional-group approach

The enclosed Baltic Sea, one of the world’s largest brackish water basins, resembles a large estuary with steep horizontal and vertical environmental gradients. Thus, salinities range from 25 to 30 ppt in the Danish Sound area in the south to 1–3 ppt in the inner reaches of the Gulfs of Bothnia and Finland, and a persistent pycnocline in the Baltic basin causes stagnation of bottom waters for long periods, with periodic hypoxia/anoxia as a consequence, over an area covering up to 100 000 km². Further, climatic variation from boreal to subarctic causes additional stress on the ecosystem. In recent decades, eutrophication and pollution have also significantly affected the biota of the Baltic Sea. The soft bottom infauna is poor in terms of species composition, and functional complexity is considered to be low. This paper examines the estuarine soft bottom infauna of the Baltic Sea along some principal environmental gradients using a functional-group perspective. We have used the functional-group concept (primarily feeding type, mobility and microhabitat), designed for polychaetes by 22 , to analyze and illustrate if and how the environmental gradients are reflected in the zoobenthos. A total of 25 functional groups were identified, forming clines from complex functional communities in the south and west, towards functionally poor assemblages in the north and east. The shift in functional groups indicates a loss of carnivores, tentaculate sessile organisms, and burrowers from areas beyond the Baltic and its marine approaches towards the inner bays. On the other hand, suspension feeders and surface deposit feeders increase in importance. In the northernmost areas of the Baltic only 1–3 functional groups are found, compared to 8–20 in the south.     

微生物物种多样性、群落构建与功能性状研究进展

微生物主要包括细菌、真菌、古菌、病毒等类群, 是地球上出现时间最早、分布最广泛、个体数量最多, 以及物种和基因多样性十分丰富的生物类群。为了适应各种生境, 微生物衍生出腐生、寄生、共生等多样的生存策略, 在生物地球化学循环、生态系统演替与稳定性、环境修复以及人类健康等方面发挥着重要作用。传统的微生物监测方法限制了我们对微生物多样性的认知; 但是, 近年来高通量测序技术和生物信息学的发展极大推动了微生物多样性的研究进展。本文概述了近年来在微生物多样性分布格局与维持、群落构建以及功能属性多样性的最新进展; 总结分析了细菌、古菌、真菌的多样性纬度分布格局及其驱动因子, 选择、扩散、成种、漂变等过程对细菌、古菌、真菌的群落构建的贡献, 以及细菌和真菌的形态、生理生化、生长繁殖、扩散、基因组等功能性状的多样性; 提出了未来微生物多样性研究的重要领域: 环境宏真菌组研究, 微生物多样性与生态系统多功能性的关系研究, 以及微生物互作网络的生态功能研究。     

Fish community comparisons along environmental gradients in lakes of France and north-east USA

Aim  To assess whether eight traits of fish communities (species richness, three reproductive traits and four trophic traits) respond similarly to environmental gradients, and consequently display convergence between the lakes of France and north-east USA (NEUSA).
Location  75 French and 168 north-east USA lakes.
Methods  The data encompass fish surveys, the assignment of species into reproductive and trophic guilds, and environmental variables characterizing the lakes and their catchments. The analytical procedure was adapted from the recommendations of Schluter (1986 ) [ Ecology , 67 , 1073–1085].
Results  The comparison of the regional pools of lacustrine fishes indicated that NEUSA was about twice as speciose as France, mostly due to higher species turnover across lakes, although NEUSA lakes were consistently about 20% more speciose than French lakes for a given surface area. Warmer environments were consistently inhabited by a higher proportion of phytophilous and guarder species than were colder lakes. Hence there was convergence in community reproductive traits. Conversely, there was no evidence of convergence in the trophic structure of lacustrine fish communities between regions.
Main conclusions  The influence of temperature on the availability and quality of spawning substrates appears to be a major constraint on present-day lacustrine fish communities. In parallel, phylogenetic constraints, past events such as the diversification of the North American fish fauna, and selective extinctions during Pleistocene glaciations and subsequent recolonizations contribute to explaining the dissimilarities between the communities of the two regions and differences in their relationship to the environment.     

藏东木本植物群落功能性状分布与环境的关系

研究植物群落功能性状间的相关关系及其对环境变化的响应,能够有效揭示植物功能性状的权衡模式及其对环境的适应策略。藏东昌都地区位于横断山脉西北部,复杂气候地貌孕育了丰富的植物资源,是青藏高原森林灌丛生态系统主要组分和国际生物多样性保护的热点地区。以藏东森林灌丛群落优势木本植物为研究对象,在大量野外调查基础上,采用相关分析、主成分分析、线性回归和方差分析等方法,研究了该区域植物功能性状间的相关关系、功能性状对环境变量的响应规律以及功能性状的变异来源。结果表明：(1)藏东木本植物表现出适应高寒环境的性状权衡模式,即：比叶面积、叶体积较小而叶干物质含量较大,叶磷含量和叶钾含量协同变化;(2)海拔和气候变量共同驱动着藏东木本植物功能性状的变化,并且藏东木本植物倾向于采取“高投入—慢回报”提高御寒能力的保守型适应策略;(3)海拔是影响藏东植物功能性状变异最显著的环境变量,种间变异在藏东植物群落功能性状随环境变化中起主要作用。研究结果揭示了藏东木本植物功能性状的权衡模式及其对高寒环境的适应策略,有助于加深对藏东自然植物资源分布规律和生态功能的认识,为区域生态系统功能和生物多样性保护提供科学依据。     

Strong species‐environment feedback shapes plant community assembly along environmental gradients

An aim of community ecology is to understand the patterns of competing species assembly along environmental gradients. All species interact with their environments. However, theories of community assembly have seldom taken into account the effects of species that are able to engineer the environment. In this modeling study, we integrate the species' engineering trait together with processes of immigration and local dispersal into a theory of community assembly. We quantify the species' engineering trait as the degree to which it can move the local environment away from its baseline state towards the optimum state of the species (species‐environment feedback). We find that, in the presence of immigration from a regional pool, strong feedback can increase local species richness; however, in the absence of continual immigration, species richness is a declining function of the strength of species‐environment feedback. This shift from a negative effect of engineering strength on species richness to a positive effect, as immigration rate increases, is clearer when there is spatial heterogeneity in the form of a gradient in environmental conditions than when the environment is homogeneous or it is randomly heterogeneous. Increasing the scale over which local dispersal occurs can facilitate species richness when there is no species‐environment feedback or when the feedback is weak. However, increases in the spatial scale of dispersal can reduce species richness when the species‐environment feedback is strong. These results expand the theoretical basis for understanding the effects of the strength of species‐environment feedback on community assembly.     

A phylogenetic and trait‐based analysis of community assembly in a subtropical forest in central China

Despite several decades of study in community ecology, the relative importance of the ecological processes that determine species co‐occurrence across spatial scales remains uncertain. Some of this uncertainty may be reduced by studying the scale dependency of community assembly in the light of environmental variation. Phylogenetic information and functional trait information are often used to provide potentially valuable insights into the drivers of community assembly. Here, we combined phylogenetic and trait‐based tests to gain insights into community processes at four spatial scales in a large stem‐mapped subtropical forest dynamics plot in central China. We found that all of the six leaf economic traits measured in this study had weak, but significant, phylogenetic signal. Nonrandom phylogenetic and trait‐based patterns associated with topographic variables indicate that deterministic processes tend to dominate community assembly in this plot. Specifically, we found that, on average, co‐occurring species were more phylogenetically and functionally similar than expected throughout the plot at most spatial scales and assemblages of less similar than expected species could only be found on finer spatial scales. In sum, our results suggest that the trait‐based effects on community assembly change with spatial scale in a predictable manner and the association of these patterns with topographic variables, indicates the importance of deterministic processes in community assembly relatively to random processes.     

吉林蛟河针阔混交林功能性状分布格局及其对地形因素的响应

森林群落的构建过程及其内在机制是生态学研究的热点问题。植物功能性状是指能够代表植物的生活史策略,反映植物对环境变化响应的一系列植物属性。通过植物功能性状的分布格局及其对环境因素的响应有助于推测群落的构建过程及其内在作用机制。以吉林蛟河21.12hm²温带针阔混交林样地为研究对象,采集并测量了样地内34种木本植物的6种不同的功能性状。以20m×20m的样方为研究单元,通过计算平均成对性状距离指数（mean pairwise trait distance;PW）和平均最近邻体性状距离指数（mean nearest neighbor trait distance;NN）来探讨群落中单个性状和综合性状的分布格局。同时结合地形因子采用回归分析探讨功能性状的分布格局对局域生境变化的响应。基于PW的结果显示：单个性状中除叶面积外,其余性状的分布格局均为聚集分布多于离散分布;基于NN的结果显示：除叶面积和最大树高外,其余性状的分布格局为聚集分布多于离散分布。此外,由6种单个性状组成的综合性状的分布格局同样为聚集分布多于离散分布。基于回归分析的结果显示：森林群落中功能性状的分布格局受到海拔、坡度和坡向等因素的显著影响,而凹凸度的影响则不显著。研究结果表明包括环境过滤和生物相互作用的非随机过程能够影响温带针阔混交林的群落构建过程,中性过程对该区域群落构建过程的影响不显著。     

功能多样性和谱系多样性对热带云雾林群落构建的影响

近年来, 功能多样性和谱系多样性为探究群落构建机制提供了新方法。为了更准确地了解海南岛高海拔热带云雾林群落构建机制, 该研究以海南岛霸王岭热带云雾林为对象, 测定7个环境因子和13个植物功能性状。利用主成分分析(PCA)筛选环境因子, 以霸王岭、尖峰岭和黎母山热带云雾林分布物种建立区域物种库, 结合模型, 分析Rao二次熵(RaoQ)和平均成对谱系距离(MPD)变化对植物群落构建的影响。结果表明: 林冠开阔度、土壤全磷含量和坡度是影响植物群落构建的关键环境因子。多数功能性状的系统发育信号很低且不显著, 说明热带云雾林群落的系统发育关系与功能性状随历史进程变化不一致。RaoQ和MPD的实际观测值都显著低于期望值, 且其标准效应值与土壤磷含量显著相关, 说明生境过滤是驱动热带云雾林群落构建的关键因子, 土壤磷含量是群落构建的关键环境筛。