Characterizing termite assemblages in fragmented forests: A test case in the Argentinian Chaco

Abstract Termites are major decomposers in tropical ecosystems. To characterize their assemblages in terms of taxonomical and functional composition, Jones and Eggleton (2000, Journal of Applied Ecology 37, 191–203) recently proposed a standardized sampling protocol based on belt transects of 100 m × 2 m. We evaluated the representativeness of samples obtained by this protocol, and its suitability to calculate diversity statistics, by replicating it in an area of naturally fragmented subtropical forest. We sampled six 100 m transects in separate small forest islets, and one transect extended to 500 m in a large islet, recording presence/absence data (occurrences) of termite species in successive quadrats of 5 m × 2 m. In the large islet, strips of 100 m within the 500 m transect produced extremely variable species richness figures. This variability was primarily due to heterogeneity in the spatial distribution of soil‐dwelling termites. Combining non‐contiguous quadrats allowed us to span a broader diversity of microhabitats for an equal effort, providing less variable results and faster species accumulation. Individual transects of 100 m in small forest islets yielded too few samples to allow reliable estimations of total species richness, although these transects when pooled constituted a useful data set for comparison with other sites. In the focal habitat, a single 100 m transect appeared therefore inadequate to allow a reliable characterization of the termite assemblage, even at the level of a single forest islet. To improve the rate of species accumulation and to obtain diversity statistics allowing intersite comparisons, we suggest the use of smaller, non‐contiguous quadrats, and that sampling be continued until stable diversity estimates are obtained. In the habitat studied, such an alternative protocol could be adequately combined with a standardized protocol for collecting ground‐dwelling ants.     

Microclimate and limits to photosynthesis in a diverse community of hypolithic cyanobacteria in northern Australia

Hypolithic microbes, primarily cyanobacteria, inhabit the highly specialized microhabitats under translucent rocks in extreme environments. Here we report findings from hypolithic cyanobacteria found under three types of translucent rocks (quartz, prehnite, agate) in a semiarid region of tropical Australia. We investigated the photosynthetic responses of the cyanobacterial communities to light, temperature and moisture in the laboratory, and we measured the microclimatic variables of temperature and soil moisture under rocks in the field over an annual cycle. We also used molecular techniques to explore the diversity of hypolithic cyanobacteria in this community and their phylogenetic relationships within the context of hypolithic cyanobacteria from other continents. Based on the laboratory experiments, photosynthetic activity required a minimum soil moisture of 15% (by mass). Peak photosynthetic activity occurred between approximately 8°C and 42°C, though some photosynthesis occurred between ?1°C and 51°C. Maximum photosynthesis rates also occurred at light levels of approximately 150–550 μmol m^?2 s^?1. We used the field microclimatic data in conjunction with these measurements of photosynthetic efficiency to estimate the amount of time the hypolithic cyanobacteria could be photosynthetically active in the field. Based on these data, we estimated that conditions were appropriate for photosynthetic activity for approximately 942 h (～75 days) during the year. The hypolithic cyanobacteria community under quartz, prehnite and agate rocks was quite diverse both within and between rock types. We identified 115 operational taxonomic units (OTUs), with each rock hosting 8–24 OTUs. A third of the cyanobacteria OTUs from northern Australia grouped with Chroococcidiopsis, a genus that has been identified from hypolithic and endolithic communities from the Gobi, Mojave, Atacama and Antarctic deserts. Several OTUs identified from northern Australia have not been reported to be associated with hypolithic communities previously.     

Hypolithic Cyanobacteria Supported Mainly by Fog in the Coastal Range of the Atacama Desert

The Atacama Desert is one of the driest places on Earth, with an arid core highly adverse to the development of hypolithic cyanobacteria. Previous work has shown that when rain levels fall below ~1 mm per year, colonization of suitable quartz stones falls to virtually zero. Here, we report that along the coast in these arid regions, complex associations of cyanobacteria, archaea, and heterotrophic bacteria inhabit the undersides of translucent quartz stones. Colonization rates in these areas, which receive virtually no rain but mainly fog, are significantly higher than those reported inland in the hyperarid zone at the same latitude. Here, hypolithic colonization rates can be up to 80%, with all quartz rocks over 20 g being colonized. This finding strongly suggests that hypolithic microbial communities thriving in the seaward face of the Coastal Range can survive with fog as the main regular source of moisture. A model is advanced where the development of the hypolithic communities under quartz stones relies on a positive feedback between fog availability and the higher thermal conductivity of the quartz rocks, which results in lower daytime temperatures at the quartz–soil interface microenvironment.     

Targeted deep sequencing reveals high diversity and variable dominance of bloom-forming cyanobacteria in eutrophic lakes

Cyanobacterial blooms in eutrophic lakes are severe environmental problems worldwide. To characterize the spatiotemporal heterogeneity of cyanobacterial blooms, a high-throughput method is necessary for the specific detection of cyanobacteria. In this study, the cyanobacterial composition of three eutrophic waters in China (Taihu Lake, Dongqian Lake, and Dongzhen Reservoir) was determined by pyrosequencing the cpcBA intergenic spacer (cpcBA-IGS) of cyanobacteria. A total of 2585 OTUs were obtained from the normalized cpcBA-IGS sequence dataset at a distance of 0.05. The 238 most abundant OTUs contained 92% of the total sequences and were classified into six cyanobacterial groups. The water samples of Taihu Lake were dominated by Microcystis, mixed Nostocales species, Synechococcus, and unclassified cyanobacteria. Besides, all the samples from Taihu Lake were clustered together in the dendrogram based on shared abundant OTUs. The cyanobacterial diversity in Dongqian Lake was dramatically decreased after sediment dredging and Synechococcus became exclusively dominant in this lake. The genus Synechococcus was also dominant in the surface water of Dongzhen Reservoir, while phylogenetically diverse cyanobacteria coexisted at a depth of 10 m in this reservoir. In summary, targeted deep sequencing based on cpcBA-IGS revealed a large diversity of bloom-forming cyanobacteria in eutrophic lakes and spatiotemporal changes in the composition of cyanobacterial communities. The genus Microcystis was the most abundant bloom-forming cyanobacteria in eutrophic lakes, while Synechococcus could be exclusively dominant under appropriate environmental conditions.     

Unexpected biodiversity of ciliates in marine samples from below the photic zone

Marine microbial eukaryotes play critical roles in planktonic food webs and have been described as most diverse in the photic zone where productivity is high. We used high‐throughput sequencing (HTS) to analyse the spatial distribution of planktonic ciliate diversity from shallow waters (<30 m depth) to beyond the continental shelf (>800 m depth) along a 163 km transect off the coast of New England, USA. We focus on ciliates in the subclasses Oligotrichia and Choreotrichia (class Spirotrichea), as these taxa are major components of marine food webs. We did not observe the decrease of diversity below the photic zone expected based on productivity and previous analyses. Instead, we saw an increase of diversity with depth. We also observed that the ciliate communities assessed by HTS cluster by depth layer and degree of water column stratification, suggesting that community assembly is driven by environmental factors. Across our samples, abundant OTUs tend to match previously characterized morphospecies while rare OTUs are more often undescribed, consistent with the idea that species in the rare biosphere remain to be characterized by microscopy. Finally, samples taken below the photic zone also reveal the prevalence of two uncharacterized (i.e. lacking sequenced morphospecies) clades – clusters X₁ and X₂ – that are enriched within the nano‐sized fraction (2–10 μm) and are defined by deletions within the region of the SSU‐rDNA analysed here. Together, these data reinforce that we still have much to learn about microbial diversity in marine ecosystems, especially in deep‐waters that may be a reservoir for rare species and uncharacterized taxa.     

Spatial Distribution of Algal Assemblages in a Temperate Lowland Peat Bog

Samples of phytobenthos were collected during three different seasons in 2005 along a linear transect of a lowland peat bog at various spatial scales (10 cm, 1 m, 10 m) to investigate the seasonal dynamics, diversity, and factors influencing the spatial patterns of microalgal communities. Non‐metric multidimensional scaling (NMDS), similarity percentage (SIMPER) analyses, ANOSIM, Mantel tests and diversity indices were used to analyze the data. Seasonal dynamics were exhibited by an increase in diversity, and a decrease in dominance from May to October, with significant differences in species composition. Mantel tests showed the significant influence of distance, microhabitat type, and conductivity on maintaining the similarity of species composition on scales of 1 m and 10 m. The small‐scale processes (colonization and niche differentiation), microhabitat type, geographic distance and conductivity were found to be the main factors influencing the distribution of algal assemblages. We conclude that these factors are related to winter disturbance, and the consequent colonization and subsequent niche differentiation. (© 2009 WILEY‐VCH Verlag GmbH & Co. KGaA, Weinheim)     

Host population genetics and biogeography structure the microbiome of the sponge Cliona delitrix

Sponges occur across diverse marine biomes and host internal microbial communities that can provide critical ecological functions. While strong patterns of host specificity have been observed consistently in sponge microbiomes, the precise ecological relationships between hosts and their symbiotic microbial communities remain to be fully delineated. In the current study, we investigate the relative roles of host population genetics and biogeography in structuring the microbial communities hosted by the excavating sponge Cliona delitrix. A total of 53 samples, previously used to demarcate the population genetic structure of C. delitrix, were selected from two locations in the Caribbean Sea and from eight locations across the reefs of Florida and the Bahamas. Microbial community diversity and composition were measured using Illumina‐based high‐throughput sequencing of the 16S rRNA V4 region and related to host population structure and geographic distribution. Most operational taxonomic units (OTUs) specific to Cliona delitrix microbiomes were rare, while other OTUs were shared with congeneric hosts. Across a large regional scale (>1,000 km), geographic distance was associated with considerable variability of the sponge microbiome, suggesting a distance–decay relationship, but little impact over smaller spatial scales (<300 km) was observed. Host population structure had a moderate effect on the structure of these microbial communities, regardless of geographic distance. These results support the interplay between geographic, environmental, and host factors as forces determining the community structure of microbiomes associated with C. delitrix. Moreover, these data suggest that the mechanisms of host regulation can be observed at the population genetic scale, prior to the onset of speciation.     

Vertical gradients in species richness and community composition across the twilight zone in the North Pacific Subtropical Gyre

Although metazoan animals in the mesopelagic zone play critical roles in deep pelagic food webs and in the attenuation of carbon in midwaters, the diversity of these assemblages is not fully known. A metabarcoding survey of mesozooplankton diversity across the epipelagic, mesopelagic and upper bathypelagic zones (0–1500 m) in the North Pacific Subtropical Gyre revealed far higher estimates of species richness than expected given prior morphology‐based studies in the region (4,024 OTUs, 10‐fold increase), despite conservative bioinformatic processing. Operational taxonomic unit (OTU) richness of the full assemblage peaked at lower epipelagic–upper mesopelagic depths (100–300 m), with slight shoaling of maximal richness at night due to diel vertical migration, in contrast to expectations of a deep mesopelagic diversity maximum as reported for several plankton groups in early systematic and zoogeographic studies. Four distinct depth‐stratified species assemblages were identified, with faunal transitions occurring at 100 m, 300 m and 500 m. Highest diversity occurred in the smallest zooplankton size fractions (0.2–0.5 mm), which had significantly lower % OTUs classified due to poor representation in reference databases, suggesting a deep reservoir of poorly understood diversity in the smallest metazoan animals. A diverse meroplankton assemblage also was detected (350 OTUs), including larvae of both shallow and deep living benthic species. Our results provide some of the first insights into the hidden diversity present in zooplankton assemblages in midwaters, and a molecular reappraisal of vertical gradients in species richness, depth distributions and community composition for the full zooplankton assemblage across the epipelagic, mesopelagic and upper bathypelagic zones.     

Spatial Scaling Effects on Soil Bacterial Communities in Malaysian Tropical Forests

Spatial scaling to some extent determines biodiversity patterns in larger organisms, but its role in microbial diversity patterns is much less understood. Some studies have shown that bacterial community similarity decreases with distance, whereas others do not support this. Here, we studied soil bacterial communities of tropical rainforest in Malaysia at two spatial scales: a local scale with samples spaced every 5 m over a 150-m transect, and a regional scale with samples 1 to 1,800 km apart. PCR-amplified soil DNA for the bacterial 16S rRNA gene targeting the V1–V3 region was pyrosequenced using Roche/454 GS FLX Titanium platform. A ranked partial Mantel test showed a weak correlation between spatial distance and whole bacterial community dissimilarity, but only at the local scale. In contrast, environmental distance was highly correlated with community dissimilarity at both spatial scales, stressing the greater role of environmental variables rather than spatial distance in determining bacterial community variation at different spatial scales. Soil pH was the only environmental parameter that significantly explained the variance in bacterial community at the local scale, whereas total nitrogen and elevation were additional important factors at the regional scale. We obtained similar results at both scales when only the most abundant OTUs were analyzed. A variance partitioning analysis showed that environmental variables contributed more to bacterial community variation than spatial distance at both scales. In total, our results support a strong influence of the environment in determining bacterial community composition in the rainforests of Malaysia. However, it is possible that the remaining spatial distance effect is due to some of the myriad of other environmental factors which were not considered here, rather than dispersal limitation.     

Genetic discontinuities and disequilibria in recently established populations of the plant pathogenic fungus Mycosphaerella fijiensis

Dispersal processes of fungal plant pathogens can be inferred from analysis of spatial genetic structures resulting from recent range expansion. The relative importance of long‐distance dispersal (LDD) events vs. gradual dispersal in shaping population structures depends on the geographical scale considered. The fungus Mycosphaerella fijiensis, pathogenic on banana, is an example of a recent worldwide epidemic. Founder effects in this species were detected at both global and continental scale, suggesting stochastic spread of the disease through LDD events. In this study, we analysed the structure of M. fijiensis populations in two recently (∼1979–1980) colonized areas in Costa Rica and Cameroon. Isolates collected in 10–15 sites distributed along a ∼250‐ to 300‐ km‐long transect in each country were analysed using 19 microsatellite markers. We detected low‐to‐moderate genetic differentiation among populations in both countries and isolation by distance in Cameroon. Combined with historical data, these observations suggest continuous range expansion at the scale of banana‐production area through gradual dispersal of spores. However, both countries displayed specific additional signatures of colonization: a sharp discontinuity in gene frequencies was observed along the Cameroon transect, while the Costa Rican populations seemed not yet to have reached genetic equilibrium. These differences in the genetic characteristics of M. fijiensis populations in two recently colonized areas are discussed in the light of historical data on disease spread and ecological data on landscape features.     

Patterns of β‐diversity in a Mexican tropical dry forest

Abstract. Patterns of β‐diversity in a highly diverse tropical dry forest tree community are described; the contribution of environmental heterogeneity and distance to β‐diversity was assessed. Significant differences in elevation, insolation, slope and soil water holding capacity (p < 0.01), variables related to water availability, were found among 830 m × 100 m transects laid along contrasting slopes of a system of three parallel microbasins. A gradient in elevation and insolation was found within north‐facing transects, among 10 m × 10 m sites; south‐facing transects showed an elevation gradient while crest transects showed a gradient in water holding capacity. In total 119 species were registered, with 27 to 64 species per transect, and 4 to 16 species per site. A large β‐diversity was found among and within transects; two indices of β‐diversity consistently showed a higher β‐diversity within transects than among them. Among transects, 64% of the variance in species composition could be attributed to the environmental variables; an additional 22% to the spatial distribution of sites. Within transects, 42% of the deviance in β‐diversity values was explained by insolation, and 19% by distance. β‐diversity increased with distance and with difference in insolation among sites; north‐facing transects, those with most contrasting insolation conditions, had the steepest increase in β‐diversity with distance. Such increase was clearly associated with changes in species composition, not with changes in species richness.     

Effects of restriction of wild herbivore movement on woody and herbaceous vegetation in the Okavango Delta Botswana

We conducted herbaceous and woody vegetation surveys across Botswana's southern Okavango Buffalo Fence, which separates wildlife management from tribal grazing areas, to determine whether the restriction of herbivore movement by fencing has influenced vegetation composition, diversity and structure. We sampled herbaceous and woody vegetation at twenty paired sites every 2 km along the fence. For the herbaceous layer, ten 0.25 m² quadrats were laid every 10 m perpendicular to the fence; while for the woody vegetation, variable quadrat plots were used. Paired t‐tests were run. Results show little difference in forb or grass composition between the two sides. However, the cover and diversity of many woody species were greatly reduced across most height classes on the wildlife management side. Overall woody cover on the wildlife side of the fence was nearly half that of the tribal grazing side (t = 2.83, P = 0.011, df = 19), while overall wood diversity was also significantly less on the wildlife side (t = 3.29, P = 0.004, df = 19). We conclude that the concentration of wildlife due to the fence, while improving habitat for some herbivore species, is having a detrimental effect on plant diversity in general.     

Genetic diversity of melon aphids Aphis gossypii associated with landscape features

Despite increasing evidence that landscape features strongly influence the abundance and dispersal of insect populations, landscape composition has seldom been explicitly linked to genetic structure. We conducted a genetic study of the melon aphid, Aphis gossypii, in two counties of Beijing, China during spring migration using samples from watermelon. We performed aphid genetic analysis using restriction site associated DNA sequencing (2b‐RAD) and investigated the relationship between land cover and the genetic diversity. The percentage area of land cover (cropland, vegetable, orchard, grassland, woodland) was quantified in each particular scale (ranging from 0.5 km to 3 km) and was used as a predictor variable in our generalized linear models. We found a moderate level of genetic differentiation among nine sampled populations. Geographic distance and genetic distance were not significantly associated, indicating that geographic location was not a barrier to migration. These nine populations could be clustered depending on their level of genetic diversity (high and low). The genetic diversity (Shannon’s information index) was positively correlated with grassland at the spatial scales of 1 and 2 km and negatively with orchard and vegetable at 0.5 and 1 km. Genetic diversity was best predicted by the grassland + orchard + vegetable model at a spatial scale of 1 km. Based on the method of relative weights, orchard land had the greatest relative importance, followed by grassland and vegetable land, in that order. This study contributes to our understanding of the genetic variation of aphids in agricultural landscapes.     

Impacts of a mineral lick‐centred land use system on woody vegetation cover in an East African Savannah

Evaluation of woody vegetation changes with distance from a salt crater was conducted in the semi‐arid rangelands of southern Ethiopia. Data on live woody plants were collected over three seasons at 0, 1, 4, 6, 9 and 12 km from the salt crater. The density and diversity of woody plants differed significantly (p < .01) along the distance gradient. Six woody plant families were identified of which Fabaceae and Burseraceae were the dominant families. Acacia drepanolobium, Acacia nilotica, Commiphora africana and Acacia mellifera were among the severely encroaching woody species. There were high proportions of seedlings and saplings recorded closer to the salt crater showing a vigorous recruitment by woody plants. Woody plant encroachment along the 12‐km transect ranged from a low to severe encroachment, which could be translated into poor rangeland condition. Changes in soil characteristics increased grazing pressure and sedentary settlement around the salt crater, and the breakdown of traditional institutions seems to be major contributing factors to these vegetation changes. We suggest that severely encroached areas could be improved through a combination of methods such as bush clearing, prescribed fire, browsing animals and proper grazing management.     

Water distribution at local and landscape scales affects tree utilization by elephants in Chobe National Park,Botswana

African elephant distribution and impacts are influenced by water availability. This study investigates the formation of piospheres – gradients of vegetation degradation with increasing proximity to water – at local and landscape scales in Chobe National Park, Botswana. Thirty‐four plots record elephant impact on trees in a transect extending over 60 km from the Chobe River, differentiating between debarking and browsing on branches. Elephant utilization exhibits local patterns nested within a landscape‐level context. At a local scale, branch herbivory decreases with distance from water, while debarking first decreases and then increases again. At a landscape scale, regression and canonical correlation analyses show decreasing debarking with distance from the river. Surprisingly, branch herbivory increases with distance from river, except within the first 10 km where previous studies have focused. Elephant impact on vegetation is both more complex and extensive than previously assumed. Piosphere predictions are upheld at the local scale, with utilization decreasing with distance from water. This does not hold at the landscape scale, however, likely due to seasonal shifts in elephant distribution, diet and the presence of water in ephemeral pans. These findings have important implications for elephant management and emphasize the importance of looking across scales when assessing elephant impact.     

Effects of soil C:N:P stoichiometry on biomass allocation in the alpine and arid steppe systems

Soil nutrients strongly influence biomass allocation. However, few studies have examined patterns induced by soil C:N:P stoichiometry in alpine and arid ecosystems. Samples were collected from 44 sites with similar elevation along the 220‐km transect at spatial intervals of 5 km along the northern Tibetan Plateau. Aboveground biomass (AGB) levels were measured by cutting a sward in each plot. Belowground biomass (BGB) levels were collected from soil pits in a block of 1 m × 1 m in actual root depth. We observed significant decreases in AGB and BGB levels but increases in the BGB:AGB ratio with increases in latitude. Although soil is characterized by structural complexity and spatial heterogeneity, we observed remarkably consistent C:N:P ratios within the cryic aridisols. We observed significant nonlinear relationships between the soil N:P and BGB:AGB ratios. The critical N:P ratio in soils was measured at approximately 2.0, above which the probability of BGB:AGB response to nutrient availability is small. These findings serve as interesting contributions to the global data pool on arid plant stoichiometry, given the previously limited knowledge regarding high‐altitude regions.     

Water availability shapes edaphic and lithic cyanobacterial communities in the Atacama Desert

In the Atacama Desert, cyanobacteria grow on various substrates such as soils (edaphic) and quartz or granitoid stones (lithic). Both edaphic and lithic cyanobacterial communities have been described but no comparison between both communities of the same locality has yet been undertaken. In the present study, we compared both cyanobacterial communities along a precipitation gradient ranging from the arid National Park Pan de Azúcar (PA), which resembles a large fog oasis in the Atacama Desert extending to the semiarid Santa Gracia Natural Reserve (SG) further south, as well as along a precipitation gradient within PA. Various microscopic techniques, as well as culturing and partial 16S rRNA sequencing, were applied to identify 21 cyanobacterial species; the diversity was found to decline as precipitation levels decreased. Additionally, under increasing xeric stress, lithic community species composition showed higher divergence from the surrounding edaphic community, resulting in indigenous hypolithic and chasmoendolithic cyanobacterial communities. We conclude that rain and fog water, respectively, cause contrasting trends regarding cyanobacterial species richness in the edaphic and lithic microhabitats.     

黄泥河自然保护区狍冬季卧息地选择

2009年12月到2010年1月,在黄泥河自然保护区采用样线法对狍冬季卧息地选择进行研究.在研究中共设置了47条样线,调查了72个狍利用样方和109个对照样方,评价了15类生态因子对狍冬季卧息地选择的影响.研究结果表明:在黄泥河自然保护区冬季,狍在卧息时喜欢选择平均海拔在591 m,位于阳坡中坡位上雪被较浅、食物丰富度、灌丛盖度、郁闭度和隐蔽水平都较高的针阔混交林生境,尤其喜欢在针阔混交林中的针叶树下卧息,避开选择阴坡、针叶林和裸岩.逻辑斯蒂回归分析结果表明:食物丰富度、针叶树、雪深、裸岩和海拔是影响黄泥河自然保护区冬季狍卧息地选择的主导因子,林型、坡向和隐蔽水平是次要因子.由这7个变量组成的回归模型为:Z=32.628+11.675×坡向(1) +9.741×坡向(2)-5.486×林型(1)-7.933×林型(2)-7.496×裸岩(1)-9.906×针叶树(1)-0.043×海拔+0.170×隐蔽水平+0.220×食物丰富度-0.429×雪深.模型选择利用概率为P(z)=ez/1+ez,整体正确预测率为96.1％.     

Response of riparian plant communities to distance from surface water in the Okavango Delta,Botswana

The objective of this study was to determine the influence of distance from surface water on riparian woodland communities in the Okavango Delta. Vegetation sampling was conducted in seven sites within the Okavango Delta in 20 m × 10 m belted plots placed perpendicular to the river bank. The plots were placed at 0–10 m, 10–20 m, 20–30 m, 30–40 m and 40–50 m distance classes increasing away from the river bank. Tree height, basal area, species richness, canopy cover and diversity were determined for each distance class. Indicator species analysis was used to determine the characteristic species at each distance class. Single‐factor ANOVA and Tukey post hoc analysis were used to compare species diversity, mean tree height, cover and basal area between distance classes. Correlation between distance from surface water and vegetation parameters was sought using Spearman regression analysis. All parameters except for species richness varied significantly (P < 0.05) along distance from surface water. Distance from surface water was positively correlated all vegetation parameters except for mean species richness/plot. These results show that distance from surface water influences riparian plant community composition and distribution in the Okavango Delta. This implies that riparian plant species can be indicators of long‐term hydrologic conditions in the Delta.