Immunoglobulin allotypes of Kenyan olive baboons: Troop frequencies,linkage disequilibria,and comparisons with other studies

Sera from a total of 564 olive baboons collected at six different localities in west central Kenya were examined for the presence of cross-reactive immunoglobulin allotypes with reagents used for human sera. Serum samples were tested for Km (1 and 3), Glm (1–3 and 17), andG3m (5, 6, 10, 11, 13–16, 21, 24, and 26). Polymorphism was found for Glm (1 and 17) and G3m (10, 13, and 15). These findings on antigen presence, absence, and polymorphism show broad similarities to, along with some differences from, previous studies of baboons. Our data support the view that there are variations in allotype frequencies between troops at single localities, as well as differences among geographically separated areas. Linkage disequilibria for Gm allotypes differ in strength and direction among the various local Kenya olive baboon populations.     

The breeding and utilization of baboons for biomedical research.

The baboon (Papio cynocephalus) has been used extensively for biomedical research at the Southwest Foundation for Research and Education (SFRE) since 1958. This animal model has adapted well to captivity, has reproduced efficiently, and has proved to be very useful in many areas of medical research. Reproductive data from the SFRE baboon colony, the establishment of a breeding colony from imported animals, the present use of baboons as research models, and the predicted availability and use of these animals were discussed.     

Adaptations of crop-raiding baboons in Kenya

A field study of baboon behavior as it relates to crop-raiding was conducted on the Kenya Coast. The results proved useful for quantifying the distribution, movement, and other factors of their behavior. Such variables as troop organization, crop season, and the behavior of the farmers influence raiding behavior. Apparently diversionary activities of crop-raiding baboons result from troop distribution along habitat margins between farms and forest and from baboon vigilance behavior.     

Genetic differentiation between baboon subspecies: Relevance for biomedical research

The use of common names which may encompass a number of subspecies or species is pervasive in the biomedical literature. Failure to identify the complete taxonomic classification of research subjects presents a source of error for scientists attempting to evaluate results or to repeat experiments. This paper examines the problem in a common animal model, the baboon. Analyses of the genetic distances among five baboon subspecies (Papio hamadryas anubis, P.h. cynocephalus, P.h. papio, P.h. ursinus, and P.h. hamadryas) based on blood marker information from nine polymorphic protein loci (ADA, APRT, C3, CA1, CA2, GPI, MPI, PEPB, and PGD) available for baboons resident at the Southwest Foundation for Biomedical Research are presented. Statistical tests on the distances showed that significant genetic differences exist among the subspecies. A comparison of P.h. anubis and P.h. cynocephalus revealed that these two subspecies also differ significantly for biomedically relevant lipoprotein cholesterol levels, as can be predicted from the genetic distances. The results emphasize the pitfalls of using different types of baboons interchangeably in experimental protocols.     

Natural pathology of the Baboon (Papio spp.)

Background Baboons are useful animal models for biomedical research, but the natural pathology of the baboon is not as well defined as other non‐human primates. Methods A computer search for all morphologic diagnoses from baboon necropsies at the Southwest National Primate Research Center was performed and included all the natural deaths and animals euthanized for natural causes. Results A total of 10,883 macroscopic or microscopic morphologic diagnoses in 4297 baboons were documented and are presented by total incidence, relative incidence by sex and age‐group, and mean age of occurrence. The most common diagnoses in descending order of occurrence were hemorrhage, stillborn, amyloidosis, colitis, spondylosis, and pneumonia. The systems with the most diagnoses were the digestive, urogenital, musculoskeletal, and respiratory. Conclusion This extensive evaluation of the natural pathology of the baboon should be an invaluable biomedical research resource.     

Body mass and growth rates in a wild primate population

Summary We obtined data on body mass and growth rates for the immature members of two groups of wild baboons in Amboseli National Park, Kenya. Data were collected without feeding, trapping, or handling. The data were separated into cross-sectional and longitudinal components, allowing both the examination of body mass-age relationships and the calculation of growth rates for individuals. For animals less than three years old, body mass was wellperedicted from age by a linear model. Differences based on social group membership were small but consistent, and their origins are discussed. We detected no differences in body mass based on sex or on maternal dominance rank. For older juveniles, those three to seven years of age, a better fit was obtained from log of mass than by mass in a linear model. This was also true for the cross-sectional data set over the whole age range (zero to seven years). For older juveniles, samples were too small for quantitative analysis of differences based on sex, rank, or group membership, but trends in the data are indicated. Growth rates derived from repeat measures of body mass for 38 animals are presented and discussed.The growth rate values obtained in this study are consistent with data from cross-sectional studies of other wild baboon populations; these values for wild baboons are consistently one-half to one-third lower than growth rate values for well-provisioned captive baboons and equivalent to captive baboons fed a low-protein diet. Comparisons between primates and other mammals in the primate size range raise questions concerning ecological and behavioral constraints on primate growth rates; some possible mechanisms of constraint are suggested.     

Nonlethal management of baboons on the urban edge of a large metropole

The transformation of natural land for agricultural and urban use has displaced baboons from large parts of their historical distribution. Abundant resources within transformed areas, however, continue to attract baboons back into these human-dominated areas resulting in chronic levels of conflict throughout much of Africa. In the city of Cape Town, chacma baboons (Papio ursinus) have been raiding human-derived foods for over 200 years. In the last 20 years, the management of this conflict has shifted from predominantly lethal to nonlethal methods. In this study, we assess the success of field rangers to deter baboons from urban areas and investigate whether such management affects the diet and activity patterns of baboons. We opportunistically sampled baboon behavior and movement when field rangers were temporarily absent from managed troops in 2008. We also compared the intensity of baboon management by comparing one troop on days when the field rangers aggressively herded the troop away from the urban edge versus passively monitored them in 2004/2005. Our results reveal that when field rangers were absent, the two troops spent 70% and 80% of their time within the urban edge compared to 3% and 19% when they were present. Both troops also consumed more human-derived foods when field rangers were absent. There was no significant change in the activity budget or daily distance traveled for either troop with and without field rangers. The intensity of herding did have an impact on baboon activity and high levels of herding significantly reduced time spent feeding and increased time spent traveling, socializing, and resting. Habitat use and dietary composition did not differ between high- and low-herding days. Our results suggest that field rangers are a successful nonlethal method for reducing spatial overlap between baboons and urban areas but that intensive, unsystematic herding of the troop does have measurable impacts on behavior and should be prevented.     

Gastrointestinal Parasites in Free-Ranging Kenyan Baboons (Papio cynocephalus and P. anubis)

We screened fecal samples from 3 groups of wild-living baboons (Papio cynocephalus and P. anubis), involved in longitudinal behavioral studies, for evidence of gastrointestinal parasites. The two objectives of the study were: 1) to compare parasites from two of the groups with different foraging behavior from the same area and 2) to obtain fecal parasitic data on 3 groups of baboons to provide baseline reference data. We sampled individual baboons opportunistically from Lodge and Hook's groups, Amboseli National Park and from Mpala Group, Mpala Wildlife Research Centre, Kenya. Lodge Group baboons supplemented foraging on wild foods by daily foraging in human-source refuse, whereas Hook's and Mpala groups did not. We collected fecal samples from 55, 30 and 42 individuals in Hook's, Lodge and Mpala groups, respectively, and processed them via ether sedimentation. We identified strongylids, Streptopharagus sp., Physaloptera sp., Trichuris sp., Enterobius sp., and Strongyloides sp., in the feces, but no parasite directly attributable to exposure to people. Garbage- and wild-feeding Amboseli baboons differed in the prevalence of Streptopharagus sp., Physaloptera sp. and Trichuris sp.     

A survey of gastrointestinal parasites of olive baboons (Papio anubis) in human settlement areas of Mole National Park, Ghana

Fecal samples from 55 free-ranging olive baboons (Papio anubis) in Mole National Park, Ghana, were collected 22 June-7 July 2008 and analyzed for gastrointestinal parasites. This is the first survey of baboon gastrointestinal parasites in Ghana and provides baseline data for this area. Ninety-three percent of samples were infected, leaving 7% with no parasites observed. Of those infected, there was a 76% prevalence of strongyles, 53% Strongyloides spp., 11% Abbreviata caucasica , 62% prevalence of Balantidium coli (trophozoites and cysts identified), 4% Entomeba hystolytica/dispar, and 47% unidentified protozoan parasites. Of the strongyle infections, 9% were identified as Oesophagostamum sp. One sample contained an unidentified spirurid nematode that resembled Gongylonema sp. Mole has a mixed forest-savanna habitat, and baboons frequently range into human areas, which makes them subject to parasites from each habitat and multiple sources of exposure. We found a high prevalence of nematode parasites, consistent with a wet or cooler forest environment, or high rates of fecal contamination. The presence of Strongyloides sp., E. hystolitica/dispar, and B. coli suggest potential public health risk from baboons, but molecular identification of these parasites, and documentation of their presence in local human populations, would be necessary to confirm zoonotic transmission.     

Intestinal parasites of sympatric Pan troglodytes and Papio Spp. at two sites: Gombe (Tanzania) and Mt. Assirik (Senegal)

Experimental and clinical parasitology need natural baselines or “controls”. We present normative data intestinal parasite loads in two genera of African primates. Wild Pan troglodytes and Papio spp. were studied at two sites: Gombe in Tanzania (P. anubis) and Mt. Assirik in Senegal (P. papio). Presence or absence of parasites, especially nematodes, was recorded from fecal specimens. Gombe's primates were more often infected than were Mt. Assirik's. At Gombe, but not at Mt. Assirik, chimpanzees seemed to have a higher incidence of infection than baboons. Comparison of three baboon troops yielded apparent differences in prevalence of infection. No differences in infection were found between the wet and dry seasons in Mt. Assirik's chimpanzees.     

Baboons of the amboseli basin: Demographic stability and change

A cross-sectional demographic analysis of the entire baboon population of the Amboseli basin of southern Kenya was undertaken to complement the lon-gitudinal, intensive studies of a subpopulation. The present survey documented the extent and persistence of the influx of anubis baboons into the predominantly cynocephalus community and provided another example of the nonrandom dispersal patterns of cercopithecine males. In addition, the survey confirmed continued demographic stability of the basinwide baboon population and even growth in groups that had access to better feeding conditions, despite decline of the baboons' preferred habitat and expansion of human activities into wildlife areas. Conflicts with activities of humans, however, indicate that the present well-being of the Amboseli baboon population may be short-lived.     

Intestinal Protozoa of the Baboon Papio doguera Pucheran, 1856

SYNOPSIS. Broad scope investigations have allowed a study of the intestinal parasitic protozoa of the Kenya baboon Papio doguera in its natural habitat as well as an opportunity to follow the intestinal protozoan populations in these primates held in captivity. Samplings indicate that the amoebae found in the baboon are essentially the same as those which commonly occur in man. Balantidium coli is frequent in wild baboons but is self-limiting in animals after a few weeks in captivity. The flagellates Chilomastix mesnili and Giardia lamblia were detected in captive but not in wild baboons; the presence of the latter constitutes a new record for Papio doguera.     

Genomewide ancestry and divergence patterns from low‐coverage sequencing data reveal a complex history of admixture in wild baboons

Naturally occurring admixture has now been documented in every major primate lineage, suggesting its key role in primate evolutionary history. Active primate hybrid zones can provide valuable insight into this process. Here, we investigate the history of admixture in one of the best‐studied natural primate hybrid zones, between yellow baboons (Papio cynocephalus) and anubis baboons (Papio anubis) in the Amboseli ecosystem of Kenya. We generated a new genome assembly for yellow baboon and low‐coverage genomewide resequencing data from yellow baboons, anubis baboons and known hybrids (n = 44). Using a novel composite likelihood method for estimating local ancestry from low‐coverage data, we found high levels of genetic diversity and genetic differentiation between the parent taxa, and excellent agreement between genome‐scale ancestry estimates and a priori pedigree, life history and morphology‐based estimates (r² = 0.899). However, even putatively unadmixed Amboseli yellow individuals carried a substantial proportion of anubis ancestry, presumably due to historical admixture. Further, the distribution of shared vs. fixed differences between a putatively unadmixed Amboseli yellow baboon and an unadmixed anubis baboon, both sequenced at high coverage, is inconsistent with simple isolation–migration or equilibrium migration models. Our findings suggest a complex process of intermittent contact that has occurred multiple times in baboon evolutionary history, despite no obvious fitness costs to hybrids or major geographic or behavioural barriers. In combination with the extensive phenotypic data available for baboon hybrids, our results provide valuable context for understanding the history of admixture in primates, including in our own lineage.     

Dental eruption schedules of wild and captive baboons

Dental eruption schedules previously used to age wild baboons have in the past derived from studies of captive animals housed under standard conditions and fed standard laboratory diets. This paper reports for the first time eruption schedules derived from wild baboons, the yellow baboons (Papio hamadryas cynocephalus) of Mikumi National Park, Tanzania, and compares these schedules with those of other baboon subspecies inhabiting both similar and dissimilar environments. Eighteen males and twelve females from the Viramba groups, ranging in age from 21 to 103 months, were trapped, and dental impressions and notes were made of the state of eruption of each tooth. Eruption of all teeth were delayed at Mikumi relative to the baboon standards derived from the captive animals at the Southwest Foundation for Biomedical Research, San Antonio, Texas. Teeth of the canine-premolar 3 complex and third molars were most delayed, erupting up to a year and a half later than their counterparts from captive animals. Comparison with data on hamadryas baboons from Erer-Gota in Ethiopia revealed that both the hamadryas and yellow subspecies of baboons, with different genetic backgrounds and living under markedly different environmental conditions, followed the same schedule. This constancy of developmental schedules suggests that these Mikumi data may reasonably be used as standards for other wild baboon populations and that acceleration of dental maturation, as well us maturation of other somatic systems in captivity, is another manifestation of the short-term adaptive plasticity of the baboon species as a whole.     

Female Reproductive Parameters of Tana River Yellow Baboons

We describe the female reproductive parameters of yellow baboons at the Tana River National Primate Reserve, Kenya. We present data on menarche, cycle length, pregnancy, birth, postpartum amenorrhea, interbirth interval, and infant survival. We also briefly compare our data to those reported for yellow baboon females at the Amboseli Reserve, Kenya. Our results indicate statistically significant differences in some of these reproductive parameters between the two sites.     

A genetic linkage map of the baboon (Papio hamadryas) genome based on human microsatellite polymorphisms

A first-generation genetic linkage map of the baboon (Papio hamadryas) genome was developed for use in biomedical and evolutionary genetics. Pedigreed baboons (n = 694) were selected from the breeding colony maintained by the Southwest Foundation for Biomedical Research. To facilitate comparison with the human genome, the baboon linkage map consists primarily of human microsatellite loci amplified using published human PCR primers. Genotypes for 325 human microsatellites and 6 novel baboon microsatellites were used in linkage analyses performed with the MultiMap expert system. The resulting sex-averaged meiotic recombination map covers all 20 baboon autosomes, with average spacing among loci of 7.2 cM. Direct comparison among homologous (orthologous) loci reveals that, for 7 human autosomes, locus order is conserved between humans and baboons. For the other 15 autosomes, one or more rearrangements distinguish the two genomes. The total centimorgan distances among homologous markers are 28.0% longer in the human genome than in the baboon, suggesting that rates of recombination may be higher in humans. This baboon linkage map is the first reported for any nonhuman primate species and creates opportunities for mapping quantitative trait loci in baboons, as well as for comparative evolutionary analyses of genome structure.     

Haemodynamics using transthoracic echocardiography in healthy pregnant and non-pregnant baboons (Papio hamadryas)

Background To determine systolic and diastolic function using transthoracic echocardiography in the baboon (Papio hamadryas). Methods Transthoracic echocardiography was performed in eight non‐pregnant female and six pregnant baboons according to American Society of Echocardiography recommendations. Results Haemodynamic measurements were obtained from fourteen baboons. Compared to non‐pregnant baboons, pregnant baboons demonstrated: (mean ± SD, pregnant vs. healthy) increased cardiac output (1615 ± 121 ml/minutes vs. 1317 ± 134 ml/minutes P = 0.001) due to an increased heart rate [120 ± 11 beats per minute (BPM) vs. 105 ± 6 BPM P = 0.018]. The inter‐observer and intra‐observer variability (mean difference ± SD) for the left ventricular outflow tract diameter was 0.05 ± 0.07 cm and 0.01 ± 0.03 cm respectively. There was minimal impact to the animal’s daily activities. Conclusions Transthoracic echocardiography was applicable and reproducible for the assessment of haemodynamics in baboons thus enabling translation of animal results to human studies.     

Living on the edge: life‐history of olive baboons at Gashaka‐Gumti National Park,Nigeria

Baboons are the most successful and ubiquitous African primates, renowned for their behavioral and reproductive flexibility, which enable them to inhabit a wide variety of habitat types. Owing to a number of long‐term field studies, comparative behavioral, developmental, demographic, and life‐history data are available from several populations, but study sites show a heavy bias toward South and East African savannahs, with little research in West or Central Africa. Life‐history data from such areas are important if we are fully to understand the nature of the environmental factors that limit baboon distribution. Here, we present demographic data for olive baboons at Gashaka‐Gumti National Park (GGNP), Nigeria, collected from December 2000–February 2006, and use these data to test comparative models of baboon life‐history. The GGNP habitat, which includes large areas of rainforest, is an environment in which baboons are little studied, and rainfall is much higher than at previous study sites. GGNP troop size data are presented from censuses, as well as life‐history data for two troops, one of which is within the park and wild‐feeding (Kwano troop), whereas the other dwells at the park edge, and supplements its diet by crop‐raiding (Gamgam troop). Troop sizes at GGNP are small compared with other field sites, but fit within previously suggested ranges for baboons under these climatic conditions. Inter‐birth intervals in Kwano troop were long compared with most studied populations, and values were not as predicted by comparative models. Consistent with known effects of food enhancement, Gamgam troop experienced shorter inter‐birth intervals and lower infant mortality than Kwano troop. We indicate some possible factors that exclude baboons from true rainforest, and suggest that the clearing of forests in Central and West Africa for agricultural land may allow baboons to extend their range into regions from which they are currently excluded. Am. J. Primatol. 71:293–304, 2009. © 2009 Wiley‐Liss, Inc.     

Experimental infection of the baboon (Papio cynocephalus) with Echinococcus granulosus of camel, cattle, sheep and goat origin from Kenya

In different areas of the world, strains of Echinococcus granulosus have been described which appear to vary in their infectivity, and laboratory primates have been used as indicators of their infectivity to man. This phenomenon was evaluated in Kenya for hydatid material of human, camel, cattle, sheep and goat origin. Viable eggs, produced by experimental infections in dogs with larval material from all the above intermediate hosts, were fed separately to four baboons (Papio cynocephalus) in each case. Baboons were autopsied between 373 and 501 days following infection and the liver, lungs, heart, spleen and kidneys were thoroughly inspected. Hydatid cysts were recovered from two baboons in each of the camel, sheep and goat groups, three baboons in the cattle group and none of the baboons in the human group. Fertile cysts were found in the cattle and goat groups and it is suggested that the baboon could be used as an experimental model for this parasite.     

Hand-rearing baboons for laboratory investigations

To conduct laboratory studies in unsedated animals that were similar anatomically and physiologically to man, five full term baboons (four Papio cynocephalus anubis, one Papio cynocephalus cynocephalus) were hand-reared. These infants were used as unsedated animal models in short-term lung clearance studies conducted from birth to 2 years of age. The hand-rearing techniques described here encouraged the formation of an infant-human rearer bond that permitted us to control the level of expressed aggressive behavior as the infant matured. These techniques resulted in baboons which displayed subordinate behavior, showed positive reception to human contact (without evidence of negative stereotypic behavioral anomalies) and remained cooperative subjects for our investigations of short-term pulmonary clearance. The baboons generally were above average in weight in comparison to conspecifically-reared baboons of similar age, sex and species. Representative lung retention curves presented on one baboon demonstrate the feasibility of lung clearance studies in these hand-reared animals. Due to its suitability for unsedated studies, this baboon model may be considered for other types of laboratory investigations.