Environmental conditions influence the plant functional diversity effect on potential denitrification

Global biodiversity loss has prompted research on the relationship between species diversity and ecosystem functioning. Few studies have examined how plant diversity impacts belowground processes; even fewer have examined how varying resource levels can influence the effect of plant diversity on microbial activity. In a field experiment in a restored wetland, we examined the role of plant trait diversity (or functional diversity, (FD)) and its interactions with natural levels of variability of soil properties, on a microbial process, denitrification potential (DNP). We demonstrated that FD significantly affected microbial DNP through its interactions with soil conditions; increasing FD led to increased DNP but mainly at higher levels of soil resources. Our results suggest that the effect of species diversity on ecosystem functioning may depend on environmental factors such as resource availability. Future biodiversity experiments should examine how natural levels of environmental variability impact the importance of biodiversity to ecosystem functioning.     

树种多样性对土壤微生物群落结构和元素生物地球化学循环的影响研究进展

森林是陆地生态系统的重要组成部分,其巨大的生产力和生态服务功能对人类的生存和发展至关重要。森林树种多样性增加能够显著提高森林生产力,关于树种多样性如何影响地下生物多样性及生态功能逐渐受到国内外学者的广泛关注。从土壤微生物及其介导的元素生物地球化学循环这一视角出发,综述了树种多样性对土壤细菌和真菌多样性、群落结构及功能的影响,提出需要进一步深入研究的方向。总体来说,树种多样性有利于增加土壤细菌生物量和多样性,是预测病原性真菌和菌根真菌多样性及群落结构的重要生物因子。树种多样性能增加土壤有机碳储量,增强森林土壤的甲烷氧化能力,并提高土壤磷周转速率及有效磷含量。关于树种多样性对森林土壤氮循环的影响需考虑多样性假说和质量比假说的相对贡献。今后应加强树种多样性对多个营养级之间相互作用的研究;关注树种多样性对生态系统多功能的影响;加强学科交叉,引入微生物种群动态模型和气候模型等模型预测方法,研究树种多样性对全球气候变化的应对机制,以期促进地上植物多样性与地下生态系统功能关系的研究,增强森林生态系统应对未来全球环境变化的能力。     

The importance of individuals: intraspecific diversity of mycorrhizal plants and fungi in ecosystems

A key component of biodiversity is the number and abundance of individuals (i.e. genotypes), and yet such intraspecific diversity is rarely considered when investigating the effects of biodiversity of mycorrhizal plants and fungi on ecosystem processes. Within a species, individuals vary considerably in important reproductive and functional attributes, including carbon fixation, mycelial growth and nutrient utilization, but this is driven by both genetic and environmental (including climatic) factors. The interactions between individual plants and mycorrhizal fungi can have important consequences for the maintenance of biodiversity and regulation of resource transfers in ecosystems. There is also emerging evidence that assemblages of genotypes may affect ecosystem processes to a similar extent as assemblages of species. The application of whole-genome sequencing and population genomics to mycorrhizal plants and fungi will be crucial to determine the extent to which individual variation in key functional attributes is genetically based. We argue the need to unravel the importance of the diversity (especially assemblages of different evenness and richness) of individuals of both mycorrhizal plants and fungi, and the need to take a 'community genetics' approach to better understand the functional significance of the biodiversity of mycorrhizal symbioses.     

树种多样性和土壤微生物多样性对人工林生产力的影响

林分生产力通常会随着树种多样性增加而增加,但不同营养级生物多样性以及树种和土壤微生物多样性之间的相互作用如何影响生产力目前尚不清楚。以亚热带不同丰富度和树种组成的人工林为研究对象,从物种、功能性状、遗传三个维度的树种多样性以及土壤真菌和细菌系统发育多样性,探究了中国亚热带人工林树种多样性和土壤微生物多样性对林分生产力的影响。研究发现,林分生产力随树种功能多样性(FD)(P<0.001)、比叶面积群落加权均值(CWM-SLA)(P<0.01)、树种系统发育多样性(PD)(P<0.05)和土壤真菌多样性(PDF)(P<0.01)的增加而显著增加,分别解释了林分生产力总变异的12.86%、6.80%、3.67%和3.08%。FD和CWM-SLA可分别通过增加土壤真菌、细菌多样性而间接提高林分生产力。研究结果表明多营养级生物多样性是维持高水平林分生产力的基础,树种多样性和土壤微生物多样性之间的自上而下的级联效应在调节生态系统生产力方面发挥着重要作用。     

Testing the effects of plant species loss on multiple ecosystem functions based on extinction scenarios

Ecosystem functions are threatened by continuing global loss of biodiversity. We simultaneously investigated three ecosystem functions and forage nutrient values following potential species extinction scenarios (dominant species removal, rare species removal, end-member species removal and random species removal) in a Mongolian grassland. ANPP, forage nutrient values, litter decomposition, and soil respiration were measured one and/or two years after plant removal. DNA samples of microorganisms extracted from the soil were subjected to metagenomics analysis. Finally, we calculated the multifunctionality, and examined the relationship of multifunctionality with plant and microorganism diversity. Among ecosystem functions, ANPP and litter decomposition rate decreased under random and rare species extinction scenarios, respectively, and forage quality increased when only dominant species had been removed. Diversity and species composition of soil microorganism were not affected by plant species richness or removal scenario. Only genus-level diversity of bacteria and ANPP were significantly and positively correlated with microbial diversity. Taken together, decreasing species richness of plants and soil organisms rarely impaired multifunctionality. Ecosystem functions were relatively robust to realistic disturbances and species extinction in natural grasslands. However, as each function responded differently to the different sets of species removed, the consequences of a realistic non-random extinction scenario for multiple ecosystem functions should be critical to the management of biodiversity loss caused by different disturbances.     

Litter and soil biodiversity jointly drive ecosystem functions

The decomposition of litter and the supply of nutrients into and from the soil are two fundamental processes through which the above- and belowground world interact. Microbial biodiversity, and especially that of decomposers, plays a key role in these processes by helping litter decomposition. Yet the relative contribution of litter diversity and soil biodiversity in supporting multiple ecosystem services remains virtually unknown. Here we conducted a mesocosm experiment where leaf litter and soil biodiversity were manipulated to investigate their influence on plant productivity, litter decomposition, soil respiration, and enzymatic activity in the littersphere. We showed that both leaf litter diversity and soil microbial diversity (richness and community composition) independently contributed to explain multiple ecosystem functions. Fungal saprobes community composition was especially important for supporting ecosystem multifunctionality (EMF), plant production, litter decomposition, and activity of soil phosphatase when compared with bacteria or other fungal functional groups and litter species richness. Moreover, leaf litter diversity and soil microbial diversity exerted previously undescribed and significantly interactive effects on EMF and multiple individual ecosystem functions, such as litter decomposition and plant production. Together, our work provides experimental evidence supporting the independent and interactive roles of litter and belowground soil biodiversity to maintain ecosystem functions and multiple services.     

Intraspecific traits change biodiversity effects on ecosystem functioning under metal stress

Studies investigating the impacts of biodiversity loss on ecosystem processes have often reached different conclusions, probably because insufficient attention has been paid to some aspects including (1) which biodiversity measure (e.g., species number, species identity or trait) better explains ecosystem functioning, (2) the mechanisms underpinning biodiversity effects, and (3) how can environmental context modulates biodiversity effects. Here, we investigated how species number (one to three species) and traits of aquatic fungal decomposers (by replacement of a functional type from an unpolluted site by another from a metal-polluted site) affect fungal production (biomass acumulation) and plant litter decomposition in the presence and absence of metal stress. To examine the putative mechanisms that explain biodiversity effects, we determined the contribution of each fungal species to the total biomass produced in multicultures by real-time PCR. In the absence of metal, positive diversity effects were observed for fungal production and leaf decomposition as a result of species complementarity. Metal stress decreased diversity effects on leaf decomposition in assemblages containing the functional type from the unpolluted site, probably due to competitive interactions between fungi. However, dominance effect maintained positive diversity effects under metal stress in assemblages containing the functional type from the metal-polluted site. These findings emphasize the importance of intraspecific diversity in modulating diversity effects under metal stress, providing evidence that trait-based diversity measures should be incorporated when examining biodiversity effects.     

Differentiating between effects of invasion and diversity: impacts of aboveground plant communities on belowground fungal communities

Exotic plant species can affect soil microbial communities with the potential for community and ecosystem feedbacks. Yet, separating the effects of exotics from confounded changes in plant community diversity still remains a challenge. We focused on how plant diversity and native or exotic life history affected root fungi because of their significant roles in community and ecosystem processes. Specifically, we examined how fungi colonizing plant roots were affected by plant richness (one, two or four species) replicated across a range of plant community mixtures (natives, exotics, native-exotic mixtures). Fungal biomass inside roots was affected independently by plant richness and mixture, while root fungal community composition was affected only by plant richness. Extraradical networks also increased in size with plant richness. By contrast, plant biomass was a function of plant mixture, with natives consistently smaller than exotics and native-exotic mixtures intermediate. Plant invasions may have an impact on the belowground community primarily through their effects on diversity, at least in the short-term. Disentangling the effects of diversity and invasion on belowground microbial communities can help us to understand both the controllers of belowground resilience and mechanisms of successful colonization and spread of exotic plants.     

Effects of plant functional group removal on structure and function of soil communities across contrasting ecosystems

Loss of plant diversity has an impact on ecosystems worldwide, but we lack a mechanistic understanding of how this loss may influence below‐ground biota and ecosystem functions across contrasting ecosystems in the long term. We used the longest running biodiversity manipulation experiment across contrasting ecosystems in existence to explore the below‐ground consequences of 19 years of plant functional group removals for each of 30 contrasting forested lake islands in northern Sweden. We found that, against expectations, the effects of plant removals on the communities of key groups of soil organisms (bacteria, fungi and nematodes), and organic matter quality and soil ecosystem functioning (decomposition and microbial activity) were relatively similar among islands that varied greatly in productivity and soil fertility. This highlights that, in contrast to what has been shown for plant productivity, plant biodiversity loss effects on below‐ground functions can be relatively insensitive to environmental context or variation among widely contrasting ecosystems.     

The Soil FungiLog procedure: method and analytical approaches toward understanding fungal functional diversity

Conservation methods often are focused on preserving the biodiversity of a particular landscape or ecosystem. Scientists frequently employ species richness as an indicator of biodiversity. However, species richness data are problematic when attempts are made to enumerate microfungi, particularly those from the soil. Many soil fungi fail to sporulate, making identification difficult. Other means of assessing the importance of fungi to ecosystem preservation must be developed. Otherwise, microfungi might be overlooked in discussions of ecosystem management and conservation issues. Herein, we have described a procedure (Soil FungiLog) and analytical techniques that will let investigators examine the functional role that soil fungi play in providing structure and stability to ecosystems. Ecosystem function in many cases might be more important than species diversity in gaining an understanding of ecosystem dynamics. Functional attributes are critical for maintaining ecosystem structure and stability. The preservation of the functions associated with the extant biota, particularly from soil microbes, might be just as important as species diversity in the conservation of ecosystems and biodiversity. The Soil FungiLog procedure was used to assess functional diversity of soil fungi in a Georgia forest disturbed by human activity and along an elevational gradient in the Chihuahuan Desert. Sites within each location were separated on the basis of fungal carbon substrate utilization profiles. These profiles were analyzed to provide information regarding the functional diversity of soil fungal assemblages at each site. The effects of disturbance and elevation were evaluated with respect to soil fungal functional diversity.     

Biodiversity and thermal ecological function: The influence of freshwater algal diversity on local thermal environments

The influence of temperature on diversity and ecosystem functioning is well studied; the converse however, that is, how biodiversity influences temperature, much less so. We manipulated freshwater algal species diversity in microbial microcosms to uncover how diversity influenced primary production, which is well documented in biodiversity research. We then also explored how visible‐spectrum absorbance and the local thermal environment responded to biodiversity change. Variations in the local thermal environment, that is, in the temperature of the immediate surroundings of a community, are known to matter not only for the rate of ecosystem processes, but also for persistence of species assemblages and the very relationship between biodiversity and ecosystem functioning. In our microcosm experiment, we found a significant positive association between algal species richness and primary production, a negative association between primary production and visible‐spectrum absorbance, and a positive association between visible‐spectrum absorbance and the response of the local thermal environment (i.e., change in thermal infrared emittance over a unit time). These findings support an indirect effect of algal diversity on the local thermal environment pointing to a hitherto unrecognized biodiversity effect in which diversity has a predictable influence on local thermal environments.     

Quantifying effects of biodiversity on ecosystem functioning across times and places

Biodiversity loss decreases ecosystem functioning at the local scales at which species interact, but it remains unclear how biodiversity loss affects ecosystem functioning at the larger scales of space and time that are most relevant to biodiversity conservation and policy. Theory predicts that additional insurance effects of biodiversity on ecosystem functioning could emerge across time and space if species respond asynchronously to environmental variation and if species become increasingly dominant when and where they are most productive. Even if only a few dominant species maintain ecosystem functioning within a particular time and place, ecosystem functioning may be enhanced by many different species across many times and places (β‐diversity). Here, we develop and apply a new approach to estimate these previously unquantified insurance effects of biodiversity on ecosystem functioning that arise due to species turnover across times and places. In a long‐term (18‐year) grassland plant diversity experiment, we find that total insurance effects are positive in sign and substantial in magnitude, amounting to 19% of the net biodiversity effect, mostly due to temporal insurance effects. Species loss can therefore reduce ecosystem functioning both locally and by eliminating species that would otherwise enhance ecosystem functioning across temporally fluctuating and spatially heterogeneous environments.     

Biodiversity and ecosystem functioning decoupled: invariant ecosystem functioning despite non‐random reductions in consumer diversity

Most research that demonstrates enhancement and stabilization of ecosystem functioning due to biodiversity is based on biodiversity manipulations within one trophic level and measuring changes in ecosystem functions provided by that same trophic level. However, it is less understood whether and how modifications of biodiversity at one trophic level propagate vertically to affect those functions supplied by connected trophic levels or by the whole ecosystem. Moreover, most experimental designs in biodiversity–ecosystem functioning research assume random species loss, which may be of little relevance to non‐randomly assembled communities. Here, we used data from a published ecotoxicological experiment in which an insecticide gradient was applied as an environmental filter to shape consumer biodiversity. We tested how non‐random consumer diversity loss affected gross primary production (an ecosystem function provided by producers) and respiration (an ecosystem function provided by the ecosystem as whole) in species‐rich multitrophic freshwater communities (total of 128 macroinvertebrate and 59 zooplankton species across treatments). The insecticide decreased and destabilized macroinvertebrate and, to a lesser extent, zooplankton diversity. However, these effects on biodiversity neither affected nor destabilized any of the two studied ecosystem functions. The main reason for this result was that species susceptible to environmental filtering were different from those most strongly contributing to ecosystem functioning. The insecticide negatively affected the most abundant species, whereas much less abundant species had the strongest effects on ecosystem functioning. The latter finding may be explained by differences in body size and feeding guild membership. Our results indicate that biodiversity modifications within one trophic level induced by non‐random species loss do not necessarily translate into changes in ecosystem functioning supported by other trophic levels or by the whole community in the case of limited overlap between sensitivity and functionality.     

Ecological potentials of biodiversity modelled from information entropies: Plant species diversity of North-Central European forests as an example

The paper deals with the hypothesis that ecosystems have well-defined potentials of biodiversity. These potentials can be quantified as information entropy of the corresponding ecosystem type. The hypothesis is verified for the diversity of plant species.

A vegetation database of North-Central European forests containing more than 12000 relevés is analyzed computationally. The samples are classified into ecosystem types that are homogeneous with respect to vegetation patterns, ecological site factors, and, implicitly, with respect to ecosystem processes. Growing numbers of relevés are selected randomly from the representatives of different ecosystem types and investigated mathematically.

Shannon information (product of logarithmic species number and evenness) obeys a hyperbolic saturation equation approaching a finite value on infinite area. This asymptotic limit defines the ecological potential of species diversity. Within a given plant-geographical region, it is determined by ecological site factors like climate and soil controlling interrelations between plants. Competition relationships and hence potentials of phytodiversity are altered by management significantly. The curve of evenness versus area size is hump-shaped. Maximum evenness is proportional to the ecological potential of species diversity. The area size where evenness attains its maximum can be interpreted as the minimum area of the respective forest type. The ecological potentials of plant species diversity modelled from information entropies correspond to vegetation patterns consisting of a limited number of plant species. These vegetation patterns are closely related to ecosystem processes like nutrient cycling, plant nutrition, evapotranspiration, microbial processes, or net-primary production. Revealing the relationships between vegetation patterns and ecosystem processes allows scaling functional information from local measurement scales up to regional scales.

It is suggested to explore genetic, proteomic, and species data in order to derive comprehensive ecological potentials of biodiversity on various levels from population to landscape. The expected results could improve the understanding of the relationship between biodiversity and ecosystem functioning as well as the sustainability of ecosystem management.     

Metagenetic community analysis of microbial eukaryotes illuminates biogeographic patterns in deep-sea and shallow water sediments

Microbial eukaryotes (nematodes, protists, fungi, etc., loosely referred to as meiofauna) are ubiquitous in marine sediments and probably play pivotal roles in maintaining ecosystem function. Although the deep-sea benthos represents one of the world's largest habitats, we lack a firm understanding of the biodiversity and community interactions amongst meiobenthic organisms in this ecosystem. Within this vast environment, key questions concerning the historical genetic structure of species remain a mystery, yet have profound implications for our understanding of global biodiversity and how we perceive and mitigate the impact of environmental change and anthropogenic disturbance. Using a metagenetic approach, we present an assessment of microbial eukaryote communities across depth (shallow water to abyssal) and ocean basins (deep-sea Pacific and Atlantic). Within the 12 sites examined, our results suggest that some taxa can maintain eurybathic ranges and cosmopolitan deep-sea distributions, but the majority of species appear to be regionally restricted. For Operationally Clustered Taxonomic Units (OCTUs) reporting wide distributions, there appears to be a taxonomic bias towards a small subset of taxa in most phyla; such bias may be driven by specific life history traits amongst these organisms. In addition, low genetic divergence between geographically disparate deep-sea sites suggests either a shorter coalescence time between deep-sea regions or slower rates of evolution across this vast oceanic ecosystem. While high-throughput studies allow for broad assessment of genetic patterns across microbial eukaryote communities, intragenomic variation in rRNA gene copies and the patchy coverage of reference databases currently present substantial challenges for robust taxonomic interpretations of eukaryotic data sets.     

Elevated temperature may reduce functional but not taxonomic diversity of fungal assemblages on decomposing leaf litter in streams

Mounting evidence points to a linkage between biodiversity and ecosystem functioning (B-EF). Global drivers, such as warming and nutrient enrichment, can alter species richness and composition of aquatic fungal assemblages associated with leaf-litter decomposition, a key ecosystem process in headwater streams. However, effects of biodiversity changes on ecosystem functions might be countered by the presumed high functional redundancy of fungal species. Here, we examined how environmental variables and leaf-litter traits (based on leaf chemistry) affect taxonomic and functional α- and β-diversity of fungal decomposers. We analysed taxonomic diversity (DNA-fingerprinting profiles) and functional diversity (community-level physiological profiles) of fungal communities in four leaf-litter species from four subregions differing in stream-water characteristics and riparian vegetation. We hypothesized that increasing stream-water temperature and nutrients would alter taxonomic diversity more than functional diversity due to the functional redundancy among aquatic fungi. Contrary to our expectations, fungal taxonomic diversity varied little with stream-water characteristics across subregions, and instead taxon replacement occurred. Overall taxonomic β-diversity was fourfold higher than functional diversity, suggesting a high degree of functional redundancy among aquatic fungi. Elevated temperature appeared to boost assemblage uniqueness by increasing β-diversity while the increase in nutrient concentrations appeared to homogenize fungal assemblages. Functional richness showed a negative relationship with temperature. Nonetheless, a positive relationship between leaf-litter decomposition and functional richness suggests higher carbon use efficiency of fungal communities in cold waters.     

The impact of global climate change on genetic diversity within populations and species

Genetic diversity provides the basic substrate for evolution, yet few studies assess the impacts of global climate change (GCC) on intraspecific genetic variation. In this review, we highlight the importance of incorporating neutral and non‐neutral genetic diversity when assessing the impacts of GCC, for example, in studies that aim to predict the future distribution and fate of a species or ecological community. Specifically, we address the following questions: Why study the effects of GCC on intraspecific genetic diversity? How does GCC affect genetic diversity? How is the effect of GCC on genetic diversity currently studied? Where is potential for future research? For each of these questions, we provide a general background and highlight case studies across the animal, plant and microbial kingdoms. We further discuss how cryptic diversity can affect GCC assessments, how genetic diversity can be integrated into studies that aim to predict species' responses on GCC and how conservation efforts related to GCC can incorporate and profit from inclusion of genetic diversity assessments. We argue that studying the fate of intraspecifc genetic diversity is an indispensable and logical venture if we are to fully understand the consequences of GCC on biodiversity on all levels.     

Maintenance of soil functioning following erosion of microbial diversity

The paradigm that soil microbial communities, being very diverse, have high functional redundancy levels, so that erosion of microbial diversity is less important for ecosystem functioning than erosion of plant or animal diversity, is often taken for granted. However, this has only been demonstrated for decomposition/respiration functions, performed by a large proportion of the total microbial community, but not for specialized microbial groups. Here, we determined the impact of a decrease in soil microbial diversity on soil ecosystem processes using a removal approach, in which less abundant species were removed preferentially. This was achieved by inoculation of sterile soil microcosms with serial dilutions of a suspension obtained from the same non-sterile soil and subsequent incubation, to enable recovery of community size. The sensitivity to diversity erosion was evaluated for three microbial functional groups with known contrasting taxonomic diversities (ammonia oxidizers < denitrifiers < heterotrophs). Diversity erosion within each functional group was characterized using molecular fingerprinting techniques: ribosomal intergenic spacer analysis (RISA) for the eubacterial community, denaturing gradient gel electrophoresis (DGGE) analysis of nirK genes for denitrifiers, and DGGE analysis of 16S rRNA genes for betaproteobacterial ammonia oxidizers. In addition, we simulated the impact of the removal approach by dilution on the number of soil bacterial species remaining in the inoculum using values of abundance distribution of bacterial species reported in the literature. The reduction of the diversity of the functional groups observed from genetic fingerprints did not impair the associated functioning of these groups, i.e. carbon mineralization, denitrification and nitrification. This was remarkable, because the amplitude of diversity erosion generated by the dilution approach was huge (level of bacterial species loss was estimated to be around 99.99% for the highest dilution). Our results demonstrate that the vast diversity of the soil microbiota makes soil ecosystem functioning largely insensitive to biodiversity erosion even for functions performed by specialized groups.     

城市生物多样性分布格局研究进展

城市生物多样性分布格局由自然生态环境和城市化过程所决定;其动态和机理与自然生态系统迥然不同.城市生物多样性为城市生态系统提供了诸多生态系统功能和服务,对改善城市环境、维持城市可持续发展有着重要的意义和作用.城市化过程深刻改变了城市的生物多样性分布格局,导致了诸如本地物种多样性降低、外来物种多样性增加、物种同质化等一系列问题.近年来,城市生物多样性受到学界高度关注,大量研究结果既回答了一些关键性问题,又提出了诸多新的论题和挑战.分析了当前城市生物多样性分布格局研究的若干热点问题,总结了影响城市生物多样性格局的主要因素,探讨了城市生物多样性格局研究方法的关键问题,指出了未来城市生物多样性研究的发展方向,特别强调了城市生物多样性的生态系统功能研究在未来城市生物多样性研究中的重要地位.     

Plant Diversity Impacts Decomposition and Herbivory via Changes in Aboveground Arthropods

Loss of plant diversity influences essential ecosystem processes as aboveground productivity, and can have cascading effects on the arthropod communities in adjacent trophic levels. However, few studies have examined how those changes in arthropod communities can have additional impacts on ecosystem processes caused by them (e.g. pollination, bioturbation, predation, decomposition, herbivory). Therefore, including arthropod effects in predictions of the impact of plant diversity loss on such ecosystem processes is an important but little studied piece of information. In a grassland biodiversity experiment, we addressed this gap by assessing aboveground decomposer and herbivore communities and linking their abundance and diversity to rates of decomposition and herbivory. Path analyses showed that increasing plant diversity led to higher abundance and diversity of decomposing arthropods through higher plant biomass. Higher species richness of decomposers, in turn, enhanced decomposition. Similarly, species-rich plant communities hosted a higher abundance and diversity of herbivores through elevated plant biomass and C:N ratio, leading to higher herbivory rates. Integrating trophic interactions into the study of biodiversity effects is required to understand the multiple pathways by which biodiversity affects ecosystem functioning.