The structure of sitting-atop complexes of metalloporphyrins studied by theoretical methods

The metallation of tetrapyrroles is believed to proceed via a sitting-atop (SAT) complex, in which some of the pyrrole nitrogen atoms are still protonated and the metal ion resides above the ring plane. No crystal structure of such a complex has been presented, but NMR and extended X-ray absorption fine structure (EXAFS) data has been reported for Cu(2+) in acetonitrile. We have used density functional calculations to obtain reasonable models for SAT complexes of porphyrins with Mg(2+), Fe(2+), and Cu(2+). The results show that there are many possible SAT complexes with 1-5 solvent molecules, one or two metal ions, and cis or trans protonation of the porphyrin ring. Many of these have similar energies and their relative stabilities vary with the metal ion. A complex with two cis pyrrolenine nitrogens atoms and 2-4 solvent molecules coordinated to Cu(2+) fits the NMR and EXAFS data best. However, we cannot fully exclude the possibility that what is observed is rather a mixture of a doubly protonated porphyrin and the copper porphyrin. Mg(2+) has a lower affinity for porphyrin and stronger affinity for water, so a complex with five water molecules and only one bond to porphyrin seems to be most stable. For Fe(2+), a cis structure with two first-sphere water molecules and four interactions to the porphyrin seems to be most likely.     

PtL3 X-ray absorption studies of Pt model compounds and [(NH3)2Pt(OH)2Pt(NH3)2]2+ bound to DNA

The Pt L₃ X-ray absorption spectra of a series of Pt compounds have been recorded and their extended fine structure (EXAFS) analysed to investigate the sensitivity of EXAFS to non-first-shell PtPt distances. The Pt L₃ EXAFS spectra of complexes formed between [(NH₃)₂Pt(OH)₂Pt(NH₃)₂]²⁺ and calf thymus DNA were also recorded. PtPt vectors could not be detected in these spectra. When combined with the model compound studies, this result rules out Pt dimer structures for the PtDNA complex which involve rigidly bridged, adjacent Pt atoms. Such structures, based on dimeric bonding of a hydroxo dimer intermediate to DNA, have been proposed as models for cisplatin antitumor activity. These types of models now seem unlikely.     

New macrocyclic Schiff base complexes incorporating a phenanthroline unit: Part 1; Template synthesis of three cadmium(II) complexes and crystal structure, NMR and ab initio studies

Complexes of three Cd(II)-containing macrocyclic Schiff base complexes containing a phenanthroline ligand (L) of the type [CdLⁿ(Cl)]⁺ (n=2,3,4), have been prepared via [1+1] cyclocondensation of 2,9-dicarboxaldehyde-1,10-phenanthroline and a number of linear triamines via a metal-templated reaction and coordination features have been examined. The ligands, L, are 16-, 17-, and 18-membered pentaaza macrocycles and all the complexes incorporate a 1,10-phenanthroline unit as an integral part of their cyclic structure. The complexes have been characterized by a variety of methods including IR, ¹H, ¹³C, DEPT, COSY(H,H) and HMQC(H,C) NMR studies and MALDI mass spectrometry. The polymeric structure of was determined by X-ray crystallography, which showed that the complex cation consisted of a pentagonal bipyramidally coordinated Cd(II) ion. The seven-coordinated Cd(II) ion is ligated by the five nitrogen atoms of the macrocycle in the equatorial plane and has two bridging chloride ligands in the axial positions resulting in a ribbon of such complex ions. Supporting ab initio HF-MO calculations have been undertaken using the standard 3-21G^∗ and 6-31G^∗ basis sets.     

The EXAFS study on the local structure of lanthanum in spinach PSII

The complex of photosystem II (PSII) had been prepared from spinach by treatment with Triton X-100. The PSII, which had been depleted of the extrinsic 17- and 23-kDa polypeptides, was obtained by exposing the solution to a high concentration of NaCl, and the complex of PSII-La³⁺ was prepared by treatment with LaCl₃. The result indicated that La³⁺ could inhibit the oxygen-evolution activity of PSII by replacing the Ca²⁺. The local structural environment of La in PSII has been also studied by using extended X-ray absorption fine structure (EXAFS). The primary result of EXAFS indicated that La coordinated with eight oxygen and/or nitrogen atoms, with the distance of the La-O/N bond being 2.5 Å. In addition, La coordinated with four carbon atoms, with a distance of 3.5 Å in the second shell. In the third shell, La coordinated with two manganese atoms, with the distance of La-Mn bond being 4.49 Å, and it was also found that the La-Mn distance (4.49 Å) was longer than that of Ca-Mn (3.3 Å) (1) in PSII.     

Protonation states of intermediates in the reaction mechanism of [NiFe] hydrogenase studied by computational methods

The [NiFe] hydrogenases catalyse the reversible conversion of H₂ to protons and electrons. The active site consists of a Fe ion with one carbon monoxide, two cyanide, and two cysteine (Cys) ligands. The latter two bridge to a Ni ion, which has two additional terminal Cys ligands. It has been suggested that one of the Cys residues is protonated during the reaction mechanism. We have used combined quantum mechanical and molecular mechanics (QM/MM) geometry optimisations, large QM calculations with 817 atoms, and QM/MM free energy simulations, using the TPSS and B3LYP methods with basis sets extrapolated to the quadruple zeta level to determine which of the four Cys residues is more favourable to protonate for four putative states in the reaction mechanism, Ni-SI_a, Ni-R, Ni-C, and Ni-L. The calculations show that for all states, the terminal Cys-546 residue is most easily protonated by 14–51 kJ/mol, owing to a more favourable hydrogen-bond pattern around this residue in the protein.     

The investigation of the G-quadruplex aptamer selectivity to Pb2+ ion: a joint molecular dynamics simulation and density functional theory study

Abstract

The aptamers with the ability to form a G-quadruplex structure can be stable in the presence of some ions. Hence, study of the interactions between such aptamers and ions can be beneficial to determine the highest selective aptamer toward an ion. In this article, molecular dynamics (MD) simulations and quantum mechanics (QM) calculations have been applied to investigate the selectivity of the T30695 aptamer toward Pb²⁺ in comparison with some ions. The Free Energy Landscape (FEL) analysis indicates that Pb²⁺ has remained inside the aptamer during the MD simulation, while the other ions have left it. The Molecular Mechanics Poisson-Boltzmann Surface Area (MM-PBSA) binding energies prove that the conformational stability of the aptamer is the highest in the presence of Pb²⁺. According to the compaction parameters, the greatest compressed ion-aptamer complex, and hence, the highest ion-aptamer interaction have been induced in the presence of Pb²⁺. The contact maps clarify the closer contacts between the nucleotides of the aptamer in the presence of Pb²⁺. The density functional theory (DFT) results show that Pb²⁺ forms the most stable complex with the aptamer, which is consistent with the MD results. The QM calculations reveal that the N-H bonds and the O…H distances are the longest and the shortest, respectively, in the presence of Pb²⁺. The obtained results verify that the strongest hydrogen bonds (HBs), and hence, the most compressed aptamer structure are induced by Pb²⁺. Besides, atoms in molecules (AIM) and natural bond orbital (NBO) analyses confirm the results.

Communicated by Ramaswamy H. Sarma     

Stability and solvation of alkali metal ion complexes with dibenzo-30-crown-10

Stability constants for the 1:1 complexes of dibenzo-30-crown-10 (DB30C10) with alkali metal ions have been determined at 25 °C in nitromethane and water by conductometry and capillary electrophoresis, respectively. Transfer activity coefficients of DB30C10 and its complexes from nitromethane to S (S = water, acetonitrile, propylene carbonate, methanol, and N,N-dimethylformamide) have been determined at 25 °C to evaluate the solvation properties. The stability constant in the poorly solvating solvent, nitromethane, decreases with increasing metal ion size, Na⁺ > K⁺ > Rb⁺ > Cs⁺, reflecting the intrinsic selectivity governed by electrostatic interaction between the metal ion and the ether oxygen atoms. It is also suggested that a part of the ether oxygen atoms does not bind to the metal ion in the Na(DB30C10)⁺ complex. The aqueous stability constant varies as Na⁺ ? K⁺ ≈ Rb⁺ ≈ Cs⁺; this selectivity pattern is similar to that in acetonitrile, propylene carbonate, and methanol. The complex stability in water is very low compared to that in the nonaqueous solvents, owing to hydrogen bonding of water to the oxygen atoms of the free crown ether. The transfer activity coefficient values show that DB30C10 shields all the metal ions effectively from the solvents and lead to the conclusion that the complexation selectivity in S receives a significant contribution from the solvation of the free metal ions. The Na(DB30C10)⁺ complex has specific interaction with water, causing much lower K⁺/Na⁺ selectivity in H₂O than in MeOH.     

A mechanistic model of the cysteine synthase complex

Plants and bacteria assimilate and incorporate inorganic sulfur into organic compounds such as the amino acid cysteine. Cysteine biosynthesis involves a bienzyme complex, the cysteine synthase (CS) complex. The CS complex is composed of the enzymes serine acetyl transferase (SAT) and O-acetyl-serine-(thiol)-lyase (OAS-TL). Although it is experimentally known that formation of the CS complex influences cysteine production, the exact biological function of the CS complex, the mechanism of reciprocal regulation of the constituent enzymes and the structure of the complex are still poorly understood. Here, we used docking techniques to construct a model of the CS complex from mitochondrial Arabidopsis thaliana. The three-dimensional structures of the enzymes were modeled by comparative techniques. The C-termini of SAT, missing in the template structures but crucial for CS formation, were modeled de novo. Diffusional encounter complexes of SAT and OAS-TL were generated by rigid-body Brownian dynamics simulation. By incorporating experimental constraints during Brownian dynamics simulation, we identified complexes consistent with experiments. Selected encounter complexes were refined by molecular dynamics simulation to generate structures of bound complexes. We found that although a stoichiometric ratio of six OAS-TL dimers to one SAT hexamer in the CS complex is geometrically possible, binding energy calculations suggest that, consistent with experiments, a ratio of only two OAS-TL dimers to one SAT hexamer is more likely. Computational mutagenesis of residues in OAS-TL that are experimentally significant for CS formation hindered the association of the enzymes due to a less-favorable electrostatic binding free energy. Since the enzymes from A. thaliana were expressed in Escherichia coli, the cross-species binding of SAT and OAS-TL from E. coli and A. thaliana was explored. The results showed that reduced cysteine production might be due to a cross-binding of A. thaliana OAS-TL with E. coli SAT. The proposed models of the enzymes and their complexes provide mechanistic insights into CS complexation.     

Study of complex formation with 2-hydroxyiminocarboxylates: specific metal binding ability of 2-(4-methylthiazol-2-yl)-2-(hydroxyimino)acetic acid

Complex formation properties of a novel water soluble thiazolyloxime 2-(4-methylthiazol-2-yl)-2-(hydroxyimino)acetic acid (H₃L¹) with Cu²⁺ and Ni²⁺ were investigated in solution by potentiometrical and spectral (UV-Vis, EPR, NMR) methods. All Cu²⁺ and most of Ni²⁺ complex species detected in solution were found to have square-planar MN₄ core with oxime and heterocyclic nitrogen atoms which was rationalized in terms of destabilizing effect of repulsive interaction between oxygen atom of carboxylic group and nitrogen atom of thiazole ring in N,O-coordinated ligand conformation. It has been found that stability of metal complexes in a series of oxime ligands is dependent upon basicity of nitrogen atom of oxime group. The thiazolyloxime forms less stable complexes with Cu²⁺ but stronger ones with Ni²⁺ ions when compared to parent 2-(hydroxyimino)propanoic acid. The lower stability obtained for Cu²⁺ complexes was elucidated in terms of negative inductive effect of the thiazole and nitrile substituents as well as an effect of intramolecular attractive interaction between thiazolyl sulfur and oxime oxygen atoms in thiazolyloxime. In the case of Ni²⁺ the complexes formed are square-planar and it is why thiazolyl ligand is more effective in metal ion binding than simple 2-(hydroxyimino)propanoic acid forming only octahedral species. The solid state structure of the Co³⁺ complex K₃[Co(HL¹)₃]·5.5H₂O (1) was studied by X-ray analysis. The thiazolyloxime ligand is coordinated to Co³⁺ via oxime nitrogen and carboxylate oxygen atoms forming five-membered chelate rings.     

Synthesis, crystal structures and magnetic properties of transition metal–azide complexes coordinated with pyridyl nitronyl nitroxides

Two novel complexes Co(N₃)₂(PNN)₄ (I) and Mn(N₃)₂(PNN)₂(CH₃OH)(C₂H₅OH) (II) (PNN=2-(p-pyridyl)-4,4,5,5-tetramethylimidazoline-1-oxyl-3–oxide) were synthesized and characterized by infrared spectra, elemental analyses and UV–Vis techniques. The crystal structures of both complexes have been determined by X-ray diffraction analysis. Complex I is a neutral five-spin system and adopts a centrosymmetric tetragonally compressed octahedral coordination geometry in which Co(II) ion is coordinated to four radicals through the nitrogen atoms of the pyridine rings and two azide anions occupying the axial positions. Complex II is a neutral three-spin system in which Mn(II) ion is bound to two azide anions, two alcohol molecules and two radicals through the nitrogen atom of pyridine rings, and shows one-dimensional chain structure via hydrogen bonds (d_ON=2.78 Å). The magnetic properties for complexes I and II have been investigated in the temperature range 2–300 K. A theoretical model has been developed for complex I and the magnetic behaviors for both complexes have been discussed in detail.     

Structural analysis and sheep pituitary receptor binding of GnRH and its complexes with metal ions

Binding of GnRH and its metal complexes to a sheep pituitary receptor have been investigated showing that Cu(II)-GnRH complex is more effectively bound to the receptor than the metal-free ligand, while Ni(II) and Co(II) complexes are less effective than the metal-free GnRH. Earlier studies have explained reasonably well the complex formation with cupric ion, while in this work extensive 1H NMR measurements have been performed for free gonadotropin-releasing hormone (GnRH) and its complexes with Ni(II) in DMSO (dimethyl sulfoxide) solution. This study shows the high order of organization of the metal-free peptide in DMSO solution with two structured 'domains' whose relative orientation is modulated by the mobility of the central glycine. Furthermore, theoretical calculations were performed for the Ni(II)-GnRH complex. The data obtained in this work supports previous studies on the co-ordination of Ni(II) ions with GnRH in aqueous solutions at high pH [J. Inorg. Biochem. 33 (1988) 11] and suggest an experimental procedure to reproduce high pH in DMSO solution. In the Ni(II) complex, the metal ion was found to co-ordinate with four nitrogen atoms inducing a well definite arrangement of aromatic side-chains and a rigid backbone structure.     

Cd(II) complexes with N8 and N4O4 donor macrocyclic ligands

The coordination capability of the octaaza 24-membered (L¹) and the tetraoxotetraaza 28-membered (L²) macrocycle ligands - with different sizes, nature and number of the donor atoms - has been investigated with nitrate and perchlorate Cd(II) salts. The complexes were prepared in 1:1 and 2:1 Cd:L molar ratio. The characterization by elemental analysis, IR, LSI mass spectrometry, conductivity measurements and ¹H NMR spectroscopy, together with the crystal structure of the complexes [CdL¹](NO₃)₂ · 0.5H₂O, [CdL¹](ClO₄)₂ and [CdL²(CH₃CN)₂](ClO₄)₂ · CH₃CN · H₂O confirms the formation of mononuclear complexes in all cases. The [CdL¹](NO₃)₂ · 0.5H₂O and [CdL¹](ClO₄)₂ present a mononuclear endomacrocyclic structure with the metal ion coordinated by the eight donor nitrogen atoms from the macrocyclic backbone in a square antiprism geometry. The complex [CdL²(CH₃CN)₂](ClO₄)₂ · CH₃CN · H₂O is also mononuclear, but the cadmium ion is in an octahedral environment coordinated by four amine nitrogen atoms from the macrocyclic framework and two nitrogen atoms from two acetonitrile molecules. The ether oxygen atoms from the ligand are not coordinated.     

Zinc complexes of the antibacterial drug oxolinic acid: Structure and DNA-binding properties

The neutral mononuclear zinc complexes with the quinolone antibacterial drug oxolinic acid in the absence or presence of a nitrogen donor heterocyclic ligand 2,2′-bipyridine or 1,10-phenanthroline have been synthesized and characterized. The experimental data suggest that oxolinic acid is on deprotonated mode acting as a bidentate ligand coordinated to the metal ion through the ketone and one carboxylato oxygen atoms. The crystal structures of (chloro)(oxolinato)(2,2′-bipyridine)zinc(II), 2, and bis(oxolinato)(1,10-phenanthroline)zinc(II), 3, have been determined with X-ray crystallography. The biological activity of the complexes has been evaluated by examining their ability to bind to calf-thymus DNA (CT DNA) with UV and fluorescence spectroscopies. UV studies of the interaction of the complexes with DNA have shown that they can bind to CT DNA and the DNA-binding constants have been calculated. Competitive studies with ethidium bromide (EB) have shown that complex 3 exhibits the ability to displace the DNA-bound EB indicating that it binds to DNA in strong competition with EB.     

Computational investigation of the geometric structures of [(CN)5PtTl(CN)n]n− (n=0, 1, 2 or 3)

[(CN)₅PtTl(CN)_n]ⁿ⁻ (n=0–3, complexes I–IV) have been studied computationally using quasi-relativistic gradient-corrected density functional theory. Good agreement is obtained with previous EXAFS and Raman data for complexes II–IV, but calculations significantly overestimate the PtTl bond length and underestimate ν(PtTl) for complex I. The addition of co-ordinating water molecules to the thallium atom in complexes I–III has little effect on complexes II and III, but significantly shortens the PtTl bond in complex I, bringing it into excellent agreement with experiment. The bond length shortening is traced to intramolecular hydrogen bonding. The total molecular bonding energies of hydrated I and I′ (in which the axial ligands on the thallium and platinum atoms are interchanged) are found to be very similar to one another, suggesting that complex I might exist as a mixture of isomers in solution.     

Copper(I) halide chelates of the wide bite angle diphosphane xantphos: Crystal structures of [CuBr(xantphos)(dmpymtH)] and [CuI(xantphos)(imdtH2)] · CH3CN

Copper(I) halide complexes containing the diphosphane xantphos (4,5-bis(diphenylphosphano)-9,9-dimethyl-xanthene) and some heterocyclic thione ligands have been synthesized and characterized by ¹H NMR, IR spectroscopy, elemental analyses and melting point determinations. The complexes can be readily obtained by the addition of the thione ligand to a CuX-diphosphane adduct in acetonitrile/methanol solution. The molecular structures of [CuBr(xantphos)(dmpymtH)] and [CuI(xantphos)(imdtH₂)] · CH₃CN have been established by single-crystal X-ray diffraction. Each of these structures features a tetrahedral copper(I) center with two phosphorus atoms from the chelating diphos ligand, one halogen atom and the exocyclic sulfur atom of the heterocyclic thioamide unit. Rapid decomposition of the mixed-ligand complexes via ligand dissociation occurs upon standing of their acetonitrile solutions at room temperature for several days. The resulting colored crystals, which not only on elemental analysis but also on the basis of their NMR and IR spectra, are found to be phosphane-free coordination polymers of composition [CuX(thione)].     

Metal complexes with two tri-aza,tri-oxa pendant-armed macrocyclic ligands: Synthesis,characterization, crystal structures and fluorescence studies

Metal complexes of two new tri-aza, tri-oxa macrocycles containing ethyl acetate (L¹) or carboxymethyl (H₂L²) pendant arms with hydrated nitrate or perchlorate salts of alkaline earth, post-transition and lanthanide metal ions have been synthesized and characterized by microanalysis FAB MS, conductivity measurements, IR, UV–Vis spectroscopy and fluorescence emission studies. The synthesis and characterization of the Pb(II) complexes with the armless macrocyclic precursors L (Schiff base macrocycle) and L′ (diaminic reduced macrocycle) are also reported. The crystal structures of complexes [PbL(ClO₄)(H₂O)](ClO₄), [PbL′(ClO₄)](ClO₄) and ([Zn₂L²(Cl)(H₂O)](ClO₄))_∞ have been determined. In both lead(II) complexes, the metal ion is located inside the macrocyclic cavity and is coordinated by all N₃O₃ donor atoms in the complex with L′ but only by the nitrogen atoms present in the ligand in the complex with L. In both cases, the coordination sphere of the metal atom is completed with a perchlorate anion or a water molecule in the iminic complex of L. X-ray studies on the Zn(II) complex show the presence of a supramolecular structure that is consistent with a linear polymer formed alternately by an endomacrocyclic metal atom coordinated to a macrocyclic ligand and an exomacrocyclic metal ion in distorted octahedral and tetrahedral environments, respectively. UV–Vis and fluorescent emission studies were carried out on the ligands L¹ and H₂L² and their metal complexes, but only the luminescence spectra of the Eu(III) and Tb(III) complexes with L¹ in aqueous solution at ca. pH 7 show the characteristic visible emission of the metal. The value of the quantum yield determined for the Eu(III) complex is similar to that reported in the literature for other Eu(III) complexes.     

A structural and free energy analysis of Ag complexes to five small peptides

The complexes of Ag⁺ with the peptides MetGly, ProGly, GlyPro, GlyHis and GlyProAla were investigated using hybrid density functional theory at the B3LYP/DZVP level. The silver ion binding free energies at 298 K to each of these peptides was calculated to be 60.8, 52.0, 54.3, 71.2 and 63.3 kcal mol⁻¹, respectively. Structural information and relative free energies are presented for several isomers for each of the five complexes. Each of the global minima found for the five complexes is a charge-solvated ion. An important finding is that the Ag⁺-ProGly is the only complex where a salt bridge structure is energetically favored occurring at 4.0 kcal mol⁻¹ higher in free energy than the global minimum. The Ag⁺ ion in this salt bridge structure is attached to the carboxylate anion of zwitterionic ProGly in which the terminal amino nitrogen is protonated. For all the other complexes studied, the salt bridge structure occurs at much higher energies. All the dipeptide complexes with Ag⁺, but one, exhibit a di- or tri-coordinate metal where the sites of attachment are amino and carbonyl groups. However, the highest coordination numbers are not always the global minima due to steric costs. The global minimum of the Ag⁺-GlyProAla complex is the only structure found in this study where the metal is tetra-coordinated, binding to the terminal amino nitrogen and all three carbonyl oxygen atoms. Silver binding to sulphur and imidazole nitrogen atoms of MetGly and GlyHis, respectively, are present in the three most energetically favored species in each of these cases.     

Direct evidence of nitrogen coupling in the copper(II) complex of bovine serum albumin by S-band electron spin resonance technique

ESR spectra of the tight binding Cu(II) complex of bovine serum albumin (BSA) has been studied using S-band. At physiological pH, only one form of copper binding to BSA was detected from the ESR spectra. From previous X-band ESR spectra, nitrogen superhyperfine splittings were observable in the g perpendicular region; however, the resolution of the g parallel region was not sufficient to confirm the exact donor atoms of the complex. Using low-frequency ESR (2-4 GHz) at 77 K, we have resolved the nitrogen superhyperfine structure in the g parallel region. A computer simulation method has been developed for distinguishing between three and four nitrogen donor atoms. The Hyde-Froncisz theory of g and A strain broadening has been modified to use a field-swept calculation for the line shape. The observed intensity pattern and the computer simulation of such spectra positively confirm the structure of Cu(II) ion coordinated to four in-plane nitrogen atoms in frozen aqueous solutions of Cu(II)-BSA complexes at physiological pH. This is the first time that this binding site has been confirmed on the protein instead of a protein fragment or model compound. This work is another example of the usefulness of the S-band ESR technique for characterizing the metal-protein interactions when random variation in g factors cause line broadening in conventional X-band ESR spectra.     

Binding of sulfonamide and acetamide to the active-site Zn2+ in carbonic anhydrase: a theoretical study

Self-consistent field molecular orbital (SCF MO) calculations at both 4-31G and STO-3G levels have been used to examine the binding conformations of sulfonamide and acetamide compounds to the active site of carbonic anhydrase. The results are as follows: (1) sulfonamide binds to the Zn2+ ion in its deprotonated form through the sulfonamide nitrogen to the fourth coordination site of the metal ion; (2) acetamide as neutral species binds to the basic form of the enzyme through the carbonyl oxygen to the fifth coordination site of the metal ion; and (3) the acetamidate ion binds to the acid form of the enzyme through the amide nitrogen to form a tetracoordinated metal complex with three histidine ligands. Analysis of the effects of individual active-site residues on the binding conformations of these inhibitors suggests that metal alone favors bidentate coordination of sulfonamidate and acetamidate complexes and that electron donation from three histidine ligands to the metal ion determines the formation of a tetracoordinated metal complex, which is further stabilized by the presence of Thr 199, as it receives one hydrogen bond from the sulfonamide NH- or from the acetamide NH- and donates a backbone NH hydrogen bond to a sulfonamide oxygen. The calculated binding conformation of sulfonamide and the hydrogen-bonding interactions between sulfonamide and the enzyme are consistent with the X-ray diffraction study of the AMSulf-HCA II complex. However, no X-ray structures are available for amide-HCA II complexes.(ABSTRACT TRUNCATED AT 250 WORDS)