Generic interrelationships of theCardueae (Compositae): A cladistic analysis of morphological data

A cladistic analysis of 45 genera ofCardueae for 75 characters is presented, taking into account characters of bracts, corolla, stamens, styles and cypselas. Forty-six binary characters completeBremer's (1994) work. Some of the characters considered byBremer are criticised. The traditionalCarlininae is a paraphyletic group, the ten genera studied sharing no common derived character. A new classification of theCardueae is proposed and the distribution of the tribe is presented. Several new combinations are proposed. The nomenclature ofCentaurea is discussed and the status of the genusSerratula is analysed.     

A cladistic analysis of the cockroach wasps based on morphological data (Hymenoptera: Ampulicidae)

The Ampulicidae are one of the most basal groups within the apoid wasps, the paraphyletic assemblage of wasps previously known as Sphecidae. The morphology and taxonomy of the Ampulicidae are poorly studied, and there is no strict cladistic approach on their phylogeny yet. Here we assemble morphological characters of phylogenetic significance and submit them to parsimony analyses using modern cladistic methods. This produces a well-resolved and firmly supported phylogenetic hypothesis on the generic relationships within the group. Based on our phylogenetic results a revised classification is provided, subdividing the Ampulicidae into two monophyletic subfamilies, Ampulicinae ( Ampulex and Trirogma ) and Dolichurinae, the latter comprising two monophyletic tribes, Dolichurini ( Dolichurus and Paradolichurus ) and Aphelotomini, new tribe ( Aphelotoma and Riekefella ). Based on the resulting cladogram, the historical biogeography and the fossil record of Ampulicidae are briefly discussed.
© The Willi Hennig Society 2009.     

Relationships of Droseraceae: a cladistic analysis of rbcL sequence and morphological data

Molecular support for the monophyly of Droseraceae and its phylogenetic relationships to other dicot families was investigated using parsimony analysis of nucleotide sequences of the large subunit of ribulose-1,5-bisphosphate carboxylase (rbcL). Analysis of 100 species of plants including families of subclasses Rosidae, Hamamelidae, Dilleniidae, and Caryophyllidae (sensu Cronquist) placed monophyletic Droseraceae in the same clade as Caryophyllidae and Nepenthaceae (Dilleniidae). In a second analysis of 14 species of Droseraceae, 15 caryophyllids, one Nepenthaceae, and three Santalales, a single most-parsimonious tree was found in which Droseraceae are monophyletic, although the position of Drosophyllum as a member of Droseraceae is only weakly supported. The rbcL tree identified four major lineages within genus Drosera: 1) Dionaea; 2) the regia-clade that contains only Drosera regia; 3) the capensis-clade that contains the South African and temperate species outside of Australia; and 4) the peltata-clade that consists of principally Australian endemics. A separate analysis of 14 morphological and phytochemical characters is in general agreement with the rbcL tree except for the placement of Nepenthes, Drosophyllum, and Drosera burmanni. A combined analysis of both data sets places Drosophyllum in a clade with Triphyophyllum (Dioncophyllaceae).     

A cladistic analysis of Haemanthus and Scadoxus

Estimates, based on various cladistic methods, of the evolutionary relationship between the species of Haemanthus and Scadoxus are presented. The different methods are compared and discussed. On the data available the compatibility analysis gave a result easier to explain biologically compared to the parsimony analysis. In Haemanthus the results are ambiguous and more data needed. In Scadoxus the following sub–generic division is supported: Two subgenera, Scadoxus and Demeusea , the first with two sections, Scadoxus and Gyaxis , the second with three, Demeusea, Gamolepis and Choananthus.     

Relationships within Lentinus subg. Lentinus (Polyporales, Agaricomycetes), with emphasis on sects. Lentinus and Tigrini

Representatives of Lentinus subg. Lentinus sensu Pegler (sects. Lentinus and Tigrini) were evaluated using ribosomal ITS-1-5.8 S-ITS2 sequence data, sexual intercompatibility studies and morphological analysis. Members of sects. Dicholamellatae, Rigidi and Lentodiellum sensu Pegler were also included in the study, but in much smaller numbers. All included sections were shown to be monophyletic with respect to the taxa sampled. While no biogeographical pattern was observed in sect. Lentinus, L. tigrinus (sect. Tigrini) produced a strong phylogeographic signal. Taxa of the related Polyporus “group Polyporellus” sensu Nu?ez and Ryvarden representing two clades were included in this study. Synonymy of Lentinus lindquistii under L. tigrinus is suggested based on sexual intercompatibility studies and molecular data.     

Phylogenetic relationships in Magnoliaceae subfam. Magnolioideae: a morphological cladistic analysis

Relationships within Magnolioideae have been the subject of persistent debate; the main point at issue mostly being the disposition of tribes, genera and sections. A morphological cladistic analysis of the subfamily using Liriodendron as the out-group showed that Magnolioideae consisted of a large basal polytomy, but with five resolved and variously supported clades. Manglietia constituted a clade with sect. Rytidospermum of Magnolia subg. Magnolia. Kmeria and Woonyoungia formed a pair. Pachylarnax, Parakmeria and Manglietiastrum were grouped together, and sect. Splendentes and Dugandiodendron also formed a pair. The largest and best supported clade consisted of Magnolia subg. Magnolia sects. Oyama and Maingola, Magnolia subg. Yulania, Michelia, Aromadendron, Alcimandra, Elmerrillia, Paramichelia and Tsoongiodendron, with sect. Oyama of Magnolia subg. Magnolia is sister to the remainder. Although Magnolia sect. Maingola, Aromadendron, Alcimandra and Elmerrillia constituted a poorly resolved subclade, Aromadendron formed a monophyletic clade with Alcimandra. Within the Michelia/Magnolia subgen. Yulania subclade, Paramichelia was sister to Tsoongiodendron. These results are supported by similar placement of taxa within various molecular analyses of the family, but the low level of resolution indicates that more morphological data are needed to improve phylogenetic signal. Our results support the molecular analyses in suggesting that Magnolia is best considered to be a large and diverse genus, but that the relationships between the taxa within it require more detailed clarification, with more extensive sampling and a combined molecular and morphological approach being needed.     

Phylogenetic relationships of Lecythidaceae: a cladistic analysis using rbcL sequence and morphological data

This study examined in detail the rbcL sequence and morphological support for subfamilial relationships and monophyly of Lecythidaceae. Initially we needed to establish relationships of Lecythidaceae among other dicot families. To complete this we examined 47 rbcL sequences of 25 families along with molecular observations from several large analyses of rbcL data. All analyses strongly support the monophyly of the asterid III grouping. This analysis revealed Lecythidaceae to be paraphyletic and indicated potential outgroup relationships with Sapotaceae. Once relationships had been evaluated using molecular data we then concentrated on analyzing separate and combined morphological and molecular databases. The topology of the morphological data set was similar to the rbcL sequence and combined data sets except for the positioning of Napoleonaeoideae, Grias, Gustavia, and Oubanguia. According to the combined results, Planchonioideae, Lecythidoideae. and Foetidioideae are monophyletic, whereas the subfamily Napoleonaeoideae are paraphyletic. Nested within Napolconaeoideae, we found Asteronthos forms a strongly supported clade with Oubanguia (Scytopetalaceae). Foetidia, the only genus of Foetidioideae, is sister to Planchonioideae, and this clade is sister to Lecythidoideae. The [(Planchonioideae, Foetidioideae) Lecythidoideae are sister to Asteranthos/Oubanguia. Napoleonaeoideae are sister to the rest of Lecythidaceae.     

Synamorphy,monophyly, and cladistic analysis: A reply to Wilkinson

Wilkinson (1991) suggests that the problems of polarity decisions and homoplasy in a cladistic analysis may be solved if cladists simply accept plesiomorphy as a reliable indicator of monophyly. Here we argue that: (1) Wilkinson's argument is based on misapprehension of synapomorphy and the problem of homoplasy; (2) His proposed methodology fails to consider the full ramifications of rooting, polarity, and parsimony; and (3) His method does not solve the problems he raises. We demonstrate the limitations of this methodology by using Wilkinson's practical example. We find no justification for the assertion that plesiomorphy may reliably delimit monophyly and recommend against Wilkinson's suggested methodological revisions.     

A new species of Fomitiporia (Hymenochaetaceae, Basidiomycota) from China based on morphological and molecular characters

Fomitiporia punicata sp. nov., collected from Shaanxi Province, northern China, and so far exclusively on Punica granatum (Punicaceae), is described and illustrated, and its preliminary phylogenetic relationships are inferred based on sequence data from the ribosomal ITS-5.8S regions. Fomitiporia punicata belongs to the F. robusta–F. punctata complex, but is characterized by an effused–reflexed to pileate basidioma with triquetrous to ungulate pilei, pale yellowish brown to cinnamon brown pore surface, moderately thick-walled skeletal hyphae in the context, which are partly collapsed on drying, lack of setae, presence of fusoid to subulate cystidioles, and growth on Punica. It also forms a distinct clade within Fomitiporia, and is related to some species from the temperate or Mediterranean zone of the northern hemisphere. An identification key to the species of Fomitiporia recorded in China is provided. Fomitiporia tibetica is transferred to Pseudoinonotus.     

安徽黄精属(Polygonatum)植物的分支分析

以形态学为依据 ,结合细胞分类学、叶表皮和花粉形态的研究成果 ,用分支分析的方法探讨了安徽产黄精属 11种植物的种间演化关系。在分支分析中 ,选择万寿竹属、舞鹤草属和竹根七属作为复合外类群。根据复合外类群比较原则和一般演化规律 ,确定性状极性。结果表明 :( 1)琅琊黄精与长苞黄精为姊妹群 ,并与其余 9种黄精明显分为 2大支 ;( 2 )另一支 9种黄精中 ,玉竹、长梗黄精和金塞黄精亲缘关系密切并与其余 6种再分为 2支 ;( 3)剩下 6种黄精中 ,距药黄精和多花黄精 2种互生叶黄精极为密切并与 4种轮生叶黄精分为 2组 ;( 4 ) 4种轮生叶黄精中 ,黄精、轮叶黄精和安徽黄精亲缘关系最为密切     

Suprageneric relationships of galliform birds (Aves, Galliformes): a cladistic analysis of morphological characters

Of the basal clades of extant birds (Neornithes) the 'landfowl' or galliforms (Aves, Galliformes) are the most speciose. Cladistic analysis of more than 100 morphological characters coded at the generic level for most putative galliform genera confirms that the megapodes ('mound builders'; Megapodiidae) are the most basal clade within the order. They are followed successively by the curassows, guans and chachalacas (Cracidae), which comprise the sister-group to all other extant Galliformes (i.e. Phasianoidea). Within this large 'phasianoid' clade, analyses suggest that the guineafowl (Numididae) are the most basal taxon, although monophyly of this 'family' is not strictly supported on the basis of the morphological characters employed. An additional major clade within the phasianoid Galliformes is recovered by this analysis, comprising the traditional groupings of New World quails (Odontophoridae) and Old World quails ('Perdicini'), yet only monophyly of the former is supported unambiguously by morphological characters. Relationships within the remainder of the phasianoid taxa, including the grouse (Tetraonidae), turkeys (i.e. Meleagris / Agriocharus spp.) as well as other 'pavonine' galliforms (i.e. peafowl; Pavo , Afropavo , Rheinardia , Argusianus and Polyplectron spp.) remain largely unresolved on the basis of morphological characters, yet monophyly of the major subdivisions is supported here. Although there are a number of important differences, especially with regard to relationships within the nonquail phasianoids, the results of this morphological phylogenetic (cladistic) analysis are broadly congruent both with traditional classifications and existing molecular hypotheses of galliform phylogenetic relationships.     

A cladistic analysis of interspecific relationships ofSaguinus

The dental and cranial morphologies of all species ofSaguinus, S. oedipus, S. geoffroyi, S. leucopus, S. nigricollis, S. fuscicollis, S. labiatus, S. mystax, S. imperator, S. bicolor, andS. midas are examined. The following hypotheses are developed by cladistic methodology, using only synapomorphic characters to assess the interspecific relationships ofSaguinus.Saguinus are divided into two main groups; one consists ofS. oedipus, S. geoffroyi, andS. leucopus, and the other includesS. inustus, S. nigricollis, S. fuscicollis, S. labiatus, S. mystax, S. imperator, S. bicolor, andS. midas. In the former group,S. oedipus is more closely related toS. geoffroyi than either is toS. leucopus. In the latter group,S. labiatus, S. mystax, andS. imperator are classified into one group, andS. bicolor andS. midas form one monophyletic group.     

A cladistic analysis of the anomalocystitid mitrates

A cladistic analysis of the anomalocystitid mitrates is presented. A neutral terminology for the anomalocystitid skeleton is proposed, independent of the zoological interpretation of the fossils as echinoderms or as craniates. The anomalocystitid monophyly is supported by parsimony, although the instability of several basal taxa makes it difficult to ascertain the sequence in which characters were acquired or modified in the transition from the mi-trocystitids to the anomalocystitids. The genus Barrandeocarpus falls outside the anomalocystitids as traditionally defined in the literature, and is either polyphyletic or monophyletic. Diamphidiocystis drepanon is either a basal anomalocystitid or the sister taxon to the group ( Enoploura popei + Allanicytidiidae). Ateleocystites guttenbergensis is placed either at the base of the anomalocystitids or as the sister taxon to a group including mainly boreal forms, the only non-boreal members being the South African Bokkeveldia oosthuizeni and the Australian Victoriacystis wilkinsi.     

A multivariate and cladistic study of Vicia L. ser. Vicia (Fabaceae) based on analysis of morphological characters

 Vicia ser. Vicia, which includes the Vicia sativa aggregate, was studied by observing morphological variation. The study is an attempt to resolve the taxonomic relationships within the Vicia sativa aggregate by novel investigations along with a synthesis of the results obtained by previous researchers. The study has included some accessions and characters used previously, but has drawn accessions from a wider geographical range than has been attempted previously. Cluster analysis on the basis of 53 morphological characters justified the delimitation of four species within the series and six subspecies within the Vicia sativa aggregate. Accessions from South Asia could easily be incorporated in the classification, but some of the accessions from North Africa showed morphological differences. The morphometric data were coded using the gap weighting method of Thiele (1993) and used in a phylogenetic analysis to study the relationships between the taxa. The phylogenetic analysis, using 33 variables, showed Vicia pyrenaica closely related to Vicia sativa subsp. amphicarpa. A dichotomous key and a multi-access key to aid the identification of the taxa in the series are presented. Received January 21, 2002; accepted November 8, 2002 Published online: March 20, 2003     

A phylogenetic analysis of the Gruiformes (Aves) based on morphological characters,with an emphasis on the rails (Rallidae)

The order Gruiformes, for which even familial composition remains controversial, is perhaps the least well understood avian order from a phylogenetic perspective. The history of the systematics of the order is presented, and the ecological and biogeographic characteristics of its members are summarized. Using cladistic techniques, phylogenetic relationships among fossil and modern genera of the Gruiformes were estimated based on 381 primarily osteological characters; relationships among modern species of Grues (Psophiidae, Aramidae, Gruidae, Heliornithidae and Rallidae) were assessed based on these characters augmented by 189 characters of the definitive integument. A strict consensus tree for 20,000 shortest trees compiled for the matrix of gruiform genera (length = 967, CI = 0.517) revealed a number of nodes common to the solution set, many of which were robust to bootstrapping and had substantial support (Bremer) indices. Robust nodes included those supporting: a sister relationship between the Pedionomidae and Turnicidae; monophyly of the Gruiformes exclusive of the Pedionomidae and Turnicidae; a sister relationship between the Cariamidae and Phorusrhacoidea; a sister relationship between a clade comprising Eurypyga and Messelornis and one comprising Rhynochetos and Aptornis; monophyly of the Grues (Psophiidae, Aramidae, Gruidae, Heliornithidae and Rallidae); monophyly of a clade (Gruoidea) comprising (in order of increasingly close relationship) Psophia, Aramus, Balearica and other Gruidae, with monophyly of each member in this series confirmed; a sister relationship between the Heliornithidae and Rallidae; and monophyly of the Rallidae exclusive of Himantornis. Autapomorphic divergence was comparatively high for Pedionomus, Eurypyga, Psophia, Himantornis and Fulica; extreme autapomorphy, much of which is unique for the order, characterized the extinct, flightless Aptornis. In the species-level analysis of modern Grues, special efforts were made to limit the analytical impacts of homoplasy related to flightlessness in a number of rallid lineages. A strict consensus tree of 20,000 shortest trees compiled (length = 1232, CI = 0.463) confirmed the interfamilial relationships resolved in the ordinal analysis and established a number of other, variably supported groups within the Rallidae. Groupings within the Rallidae included: monophyly of Rallidae exclusive of Himantornis and a clade comprising Porphyrio (including Notornis) and Porphyrula; a poorly resolved, basal group of genera including Gymnocrex, Habroptila, Eulabeornis, Aramides, Canirallus and Mentocrex; an intermediate grade comprising Anurolimnas, Amaurolimnas, and Rougetius; monophyly of two major subdivisions of remaining rallids, one comprising Rallina (paraphyletic), Rallicula, and Sarothrura, and the other comprising the apparently paraphyletic ''long-billed'' rails (e.g. Pardirallus, Cyanolimnas, Rallus, Gallirallus and Cabalus and a variably resolved clade comprising ''crakes'' (e.g. Atlantisia, Laterallus and Porzana, waterhens (Amaurornis), moorhens (Gallinula and allied genera) and coots (Fulica). Relationships among ''crakes'' remain poorly resolved; Laterallus may be paraphyletic, and Porzana is evidently polyphyletic and poses substantial challenges for reconciliation with current taxonomy. Relationships among the species of waterhens, moorhens and coots, however, were comparatively well resolved, and exhaustive, fine-scale analyses of several genera (Grus, Porphyrio, Aramides, Rallus, Laterallus and Fulica) and species complexes (Porphyrio porphyrio -group,Gallirallus philippensis -group and Fulica americana -group) revealed additional topological likelihoods. Many nodes shared by a majority of the shortest trees under equal weighting were common to all shortest trees found following one or two iterations of successive weighting of characters. Provisional placements of selected subfossil rallids (e.g. Diaphorapteryx, Aphanapteryx and Capellirallus ) were based on separate heuristic searches using the strict consensus tree for modern rallids as a backbone constraint. These analyses were considered with respect to assessments of robustness, homoplasy related to flightlessness, challenges and importance of fossils in cladistic analysis, previously published studies and biogeography, and an annotated phylogenetic classification of the Gruiformes is proposed.     

Homo floresiensis: a cladistic analysis

The announcement of a new species, Homo floresiensis, a primitive hominin that survived until relatively recent times is an enormous challenge to paradigms of human evolution. Until this announcement, the dominant paradigm stipulated that: 1) only more derived hominins had emerged from Africa, and 2) H. sapiens was the only hominin since the demise of Homo erectus and Homo neanderthalensis. Resistance to H. floresiensis has been intense, and debate centers on two sets of competing hypotheses: 1) that it is a primitive hominin, and 2) that it is a modern human, either a pygmoid form or a pathological individual. Despite a range of analytical techniques having been applied to the question, no resolution has been reached. Here, we use cladistic analysis, a tool that has not, until now, been applied to the problem, to establish the phylogenetic position of the species. Our results produce two equally parsimonious phylogenetic trees. The first suggests that H. floresiensis is an early hominin that emerged after Homo rudolfensis (1.86 Ma) but before H. habilis (1.66 Ma, or after 1.9 Ma if the earlier chronology for H. habilis is retained). The second tree indicates H. floresiensis branched after Homo habilis.     

老鸦瓣属(百合科)的恢复: 以形态性状的分支分析为依据

老鸦瓣群(Amana群)是百合科中的一个东亚特有类群,仅分布在中国中东部、日本和朝鲜半岛。该类群在形态上与广义郁金香属Tulipa L.相似,但也具有与子房近等长的花柱以及2-3(-4)个苞片等与郁金香属不同的形态特征。有关该类群是否应置于郁金香属中或是否应独立为属的问题长期以来存在争议。为了澄清该问题,我们对产于中国的Amana群进行了广泛的标本室和野外形态观察,并采用分支系统学方法,对该类群3个种以及郁金香属的其他15种植物(包括土耳其的3个种)的28个形态性状数据进行了分支分析。结果表明广义郁金香属并非是一个单系类群。Amana群与广义郁金香属的其他4个组sect. Orithyia、sect. Eriostemones、sect. Leiostemones、sect. Tulipanum以及Lloydia属的两个种共同构成一个大支的3个分支。我们对广义郁金香属5个组共19种植物的ITS以及trnL-F分子序列综合分析的结果也表明：sect. Tulipanum、sect. Leiostemones、sect. Eriostemones和sect. Orithyia构成一大支,Amana群和猪牙花属的Erythronium sibiricum构成另一大支。因此,我们认为Amana群应从广义郁金香属中独立出来,恢复其老鸦瓣属Amana Honda作为属的分类地位。