Threshold Conditions for a Non-Autonomous Epidemic System Describing the Population Dynamics of Dengue

A non-autonomous dynamical system, in which the seasonal variation of a mosquito vector population is modeled, is proposed to investigate dengue overwintering. A time-dependent threshold, R(t), is deduced such that when its yearly average, denoted by , is less than 1, the disease does not invade the populations and when is greater than 1 it does. By not invading the population we mean that the number of infected individuals always decrease in subsequent seasons of transmission. Using the same threshold, all the qualitative features of the resulting epidemic can be understood. Our model suggests that trans-ovarial infection in the mosquitoes facilitates dengue overwintering. We also explain the delay between the peak in the mosquitoes population and the peak in dengue cases. An erratum to this article can be found at     

Bistable Dynamics Underlying Excitability of Ion Homeostasis in Neuron Models

When neurons fire action potentials, dissipation of free energy is usually not directly considered, because the change in free energy is often negligible compared to the immense reservoir stored in neural transmembrane ion gradients and the long–term energy requirements are met through chemical energy, i.e., metabolism. However, these gradients can temporarily nearly vanish in neurological diseases, such as migraine and stroke, and in traumatic brain injury from concussions to severe injuries. We study biophysical neuron models based on the Hodgkin–Huxley (HH) formalism extended to include time–dependent ion concentrations inside and outside the cell and metabolic energy–driven pumps. We reveal the basic mechanism of a state of free energy–starvation (FES) with bifurcation analyses showing that ion dynamics is for a large range of pump rates bistable without contact to an ion bath. This is interpreted as a threshold reduction of a new fundamental mechanism of ionic excitability that causes a long–lasting but transient FES as observed in pathological states. We can in particular conclude that a coupling of extracellular ion concentrations to a large glial–vascular bath can take a role as an inhibitory mechanism crucial in ion homeostasis, while the pumps alone are insufficient to recover from FES. Our results provide the missing link between the HH formalism and activator–inhibitor models that have been successfully used for modeling migraine phenotypes, and therefore will allow us to validate the hypothesis that migraine symptoms are explained by disturbed function in ion channel subunits, pumps, and other proteins that regulate ion homeostasis.     

Nanosecond Electric Pulses Affect a Plant-Specific Kinesin at the Plasma Membrane

Electric pulses with high field strength and durations in the nanosecond range (nsPEFs) are of considerable interest for biotechnological and medical applications. However, their actual cellular site of action is still under debate—due to their extremely short rise times, nsPEFs are thought to act mainly in the cell interior rather than at the plasma membrane. On the other hand, nsPEFs can induce membrane permeability. We have revisited this issue using plant cells as a model. By mapping the cellular responses to nsPEFs of different field strength and duration in the tobacco BY-2 cell line, we could define a treatment that does not impinge on short-term viability, such that the physiological responses to the treatment can be followed. We observe, for these conditions, a mild disintegration of the cytoskeleton, impaired membrane localization of the PIN1 auxin-efflux transporter and a delayed premitotic nuclear positioning followed by a transient mitotic arrest. To address the target site of nsPEFs, we made use of the plant-specific KCH kinesin, which can assume two different states with different localization (either near the nucleus or at the cell membrane) driving different cellular functions. We show that nsPEFs reduce cell expansion in nontransformed cells but promote expansion in a line overexpressing KCH. Since cell elongation and cell widening are linked to the KCH localized at the cell membrane, the inverted response in the KCH overexpressor provides evidence for a direct action of nsPEFs, also at the cell membrane.     

Dynamics of Pulsed X-Ray Radiation of a Plasma Micropinch Discharge

Plasma Physics Reports - A complex of diagnostic equipment has been created and a measurement procedure has been developed for a multi-channel scintillation X-ray spectrometer with nanosecond time...     

A Regression Modeling Approach for Describing Patterns of HIV Genetic Variation

We introduce a novel approach for describing patterns of HIV genetic variation using regression modeling techniques. Parameters are defined for describing genetic variation within and between viral populations by generalizing Simpson's index of diversity. Regression models are specified for these variation parameters and the generalized estimating equation framework is used for estimating both the regression parameters and their corresponding variances. Conditions are described under which the usual asymptotic approximations to the distribution of the estimators are met. This approach provides a formal statistical framework for testing hypotheses regarding the changing patterns of HIV genetic variation over time within an infected patient. The application of these methods for testing biologically relevant hypotheses concerning HIV genetic variation is demonstrated in an example using sequence data from a subset of patients from the Multicenter AIDS Cohort Study.     

Caprylic Triglyceride as a Novel Therapeutic Approach to Effectively Improve the Performance and Attenuate the Symptoms Due to the Motor Neuron Loss in ALS Disease

Amyotrophic lateral sclerosis (ALS) is a neurodegenerative disorder of motor neurons causing progressive muscle weakness, paralysis, and finally death. ALS patients suffer from asthenia and their progressive weakness negatively impacts quality of life, limiting their daily activities. They have impaired energy balance linked to lower activity of mitochondrial electron transport chain enzymes in ALS spinal cord, suggesting that improving mitochondrial function may present a therapeutic approach for ALS. When fed a ketogenic diet, the G93A ALS mouse shows a significant increase in serum ketones as well as a significantly slower progression of weakness and lower mortality rate. In this study, we treated SOD1-G93A mice with caprylic triglyceride, a medium chain triglyceride that is metabolized into ketone bodies and can serve as an alternate energy substrate for neuronal metabolism. Treatment with caprylic triglyceride attenuated progression of weakness and protected spinal cord motor neuron loss in SOD1-G93A transgenic animals, significantly improving their performance even though there was no significant benefit regarding the survival of the ALS transgenic animals. We found that caprylic triglyceride significantly promoted the mitochondrial oxygen consumption rate in vivo. Our results demonstrated that caprylic triglyceride alleviates ALS-type motor impairment through restoration of energy metabolism in SOD1-G93A ALS mice, especially during the overt stage of the disease. These data indicate the feasibility of using caprylic acid as an easily administered treatment with a high impact on the quality of life of ALS patients.     

Structure Dependence of the Calcium Dynamics in Purkinje Neuron Dendrites during Generation of Bursting Discharges: a Simulation Study

In the model of a cerebellar Purkinje neuron with reconstructed active dendrites, we investigated the impact of the ratio between volumes of the endoplasmic reticulum (organellar calcium store) and cytosol on the Ca²⁺ dynamics in asymmetrical parts of the dendritic arborization during generation of different structure-dependent patterns of bursting activity. Tonic synaptic excitation homogeneously distributed over the dendrites (a spatially homogeneous stationary input signal) caused spatially heterogeneous variations of the dendritic membrane potential (MP) accompanied by periodical or nonperiodical bursts of action potentials at the cell output. The MP waveforms recorded from the segments of asymmetrical dendrites were then applied to the membrane of selected dendrite segments as command voltages in a dynamic clamp mode. In these segments, the relative size of the stores was varied. This provided equal to each other local calcium currents and influxes into the cytosol of the segment differently filled with the organellar store. Regardless of the impulse pattern, microgeometry of the segment and the store modulated calcium transients exactly in the same way as in previous studies of electrical and concentration responses to local phasic synaptic excitation of the modeled neuron. Peak values of depolarization-induced elevations of the cytosolic Ca²⁺ concentration increased with the portion of the intracellular volume occupied by the store. The most important factor defining this dependence was the ratio of the membrane area vs the organelle-free cytosol volume of the dendritic segment. Concentrations of Са²⁺ deposited in equal-sized segments of asymmetrical parts of the dendritic arborization where asynchronous unequal variations of the MP were observed during generation of nonperiodical bursting at the output demonstrated considerable specificity. A greater amount of calcium was deposited in the segments staying, on average, in a high-depolarization state for a longer time (this intensified activation of calcium channels and amplified the corresponding Ca²⁺ influx into the cytosol). Hence, local dynamics of the Ca²⁺ concentration depend directly on local microgeometry and indirectly on global macrogeometry of the dendrite arborization, as the latter determines spatial asymmetry-related unequal transients in different parts of the dendritic arborization having active membrane properties.     

Inferring the Dynamics of Diversification: A Coalescent Approach

Recent analyses of the fossil record and molecular phylogenies suggest that there are fundamental limits to biodiversity, possibly arising from constraints in the availability of space, resources, or ecological niches. Under this hypothesis, speciation rates decay over time and biodiversity eventually saturates, with new species emerging only when others are driven to extinction. This view of macro-evolution contradicts an alternative hypothesis that biodiversity is unbounded, with species ever accumulating as they find new niches to occupy. These contrasting theories of biodiversity dynamics yield fundamentally different explanations for the disparity in species richness across taxa and regions. Here, we test whether speciation rates have decayed or remained constant over time, and whether biodiversity is saturated or still expanding. We first derive a general likelihood expression for internode distances in a phylogeny, based on the well-known coalescent process from population genetics. This expression accounts for either time-constant or time-variable rates, time-constant or time-variable diversity, and completely or incompletely sampled phylogenies. We then compare the performance of different diversification scenarios in explaining a set of 289 phylogenies representing amphibians, arthropods, birds, mammals, mollusks, and flowering plants. Our results indicate that speciation rates typically decay over time, but that diversity is still expanding at present. The evidence for expanding-diversity models suggests that an upper limit to biodiversity has not yet been reached, or that no such limit exists.     

无噪声Hodgkin-Huxley神经元对正弦信号的响应

研究了无噪声影响下的Hcdgkin-Huxley神经元在正弦信号刺激下的动力学行为,并利用“魔梯”图和峰峰间期分布图来分别描述。数值模拟结果表明,当信号振幅一定时,神经元的发放情况随频率而改变;当信号的频率一定时,峰峰间期分布随振幅而改变,相应地,峰峰间期序列也具有不同的特点。     

Cosmic Dusty Plasma and the Global Electric Circuit of the Earth

Plasma Physics Reports - The model of the global electric circuit of the Earth (GECE) is considered, which is inseparably linked with the processes in space plasma. The Earth is surrounded by...     

Dynamics of Heterogeneous Liners with Prolonged Plasma Creation

Prolonged plasma creation in heterogeneous liners, in which the liner substance is separated into two phase states (a hot plasma and a cold skeleton), is investigated both experimentally and theoretically. This situation is typical of multiwire, foam, and even gas liners in high-current high-voltage facilities. The main mechanisms governing the rate at which the plasma is created are investigated, and the simplest estimates of the creation rate are presented. It is found that, during prolonged plasma creation, the electric current flows through the entire cross section of the produced plasma shell, whose thickness is comparable with the liner radius; in other words, a current skin layer does not form. During compression, such a shell is fairly stable because of its relatively high resilience. It is shown that, under certain conditions, even a thick plasma shell can be highly compressed toward the discharge axis. A simplified numerical simulation of the compression of a plasma shell in a liner with prolonged plasma creation is employed in order to determine the conditions for achieving regimes of fairly compact and relatively stable radial compression of the shell.     

Network Bursting Dynamics in Excitatory Cortical Neuron Cultures Results from the Combination of Different Adaptive Mechanism

In the brain, synchronization among cells of an assembly is a common phenomenon, and thought to be functionally relevant. Here we used an in vitro experimental model of cell assemblies, cortical cultures, combined with numerical simulations of a spiking neural network (SNN) to investigate how and why spontaneous synchronization occurs. In order to deal with excitation only, we pharmacologically blocked GABA_Aergic transmission using bicuculline. Synchronous events in cortical cultures tend to involve almost every cell and to display relatively constant durations. We have thus named these “network spikes” (NS). The inter-NS-intervals (INSIs) proved to be a more interesting phenomenon. In most cortical cultures NSs typically come in series or bursts (“bursts of NSs”, BNS), with short (∼1 s) INSIs and separated by long silent intervals (tens of s), which leads to bimodal INSI distributions. This suggests that a facilitating mechanism is at work, presumably short-term synaptic facilitation, as well as two fatigue mechanisms: one with a short timescale, presumably short-term synaptic depression, and another one with a longer timescale, presumably cellular adaptation. We thus incorporated these three mechanisms into the SNN, which, indeed, produced realistic BNSs. Next, we systematically varied the recurrent excitation for various adaptation timescales. Strong excitability led to frequent, quasi-periodic BNSs (CV∼0), and weak excitability led to rare BNSs, approaching a Poisson process (CV∼1). Experimental cultures appear to operate within an intermediate weakly-synchronized regime (CV∼0.5), with an adaptation timescale in the 2–8 s range, and well described by a Poisson-with-refractory-period model. Taken together, our results demonstrate that the INSI statistics are indeed informative: they allowed us to infer the mechanisms at work, and many parameters that we cannot access experimentally.     

Dissecting the Functional Consequences of De Novo DNA Methylation Dynamics in Human Motor Neuron Differentiation and Physiology

1. Download high-res image (284KB)
2. Download full-size image

     

Analysis of Dynamics of Plasma Current Quench in the Globus-M Spherical Tokamak

Data on the dynamics of the plasma current quench in the Globus-M tokamak are presented. The main current quench characteristics at different toroidal magnetic fields are compared. The distribution of the toroidal current induced in the vessel wall is determined from magnetic measurements, and the electromagnetic loads acting on the vessel wall during the current quench are calculated. By extrapolating the experimental data, the additional pressure on the vessel wall during the current quench in the upgraded Globus-M2 tokamak is estimated. It is shown that the current quench results in the appearance of bending stresses in the vessel domes. Using numerical simulations, it is shown that the best agreement between the measured and calculated plasma current dynamics during the current quench corresponds to the linear (in time) influx of the carbon impurity.     

A Langevin Canonical Approach to the Dynamics of Chiral Systems: Thermal Averages and Heat Capacity

A Langevin canonical framework for a chiral two‐level system coupled to a bath of harmonic oscillators was developed within a coupling scheme different from the well‐known spin‐boson model. Thermal equilibrium values were reached at asymptotic times by solving the corresponding set of nonlinear coupled equations in a Markovian regime. In particular, phase difference thermal values (or, equivalently, the so‐called coherence factor) and heat capacity through energy fluctuations were obtained and are discussed in terms of tunneling rates and asymmetries. Chirality 26:319–325, 2014. © 2014 Wiley Periodicals, Inc.