Flood pulse trophic dynamics of larval fishes in a restored arid-land, river-floodplain, Middle Rio Grande, Los Lunas, New Mexico

Rio Grande water is intensively managed and regulated by international and interstate compacts, Native American treaties, local water rights, and federal, state, and local agencies. Legislation and engineering projects in the early twentieth century brought about water impoundment projects and channelization of the Rio Grande which led to the eventual loss of floodplain habitats. In particular, current water management practices in the Middle Rio Grande (MRG) have altered the natural flood regime altering the riparian community and floodplain dynamics which may be causing the demise of many fish species by altering food web processes. The Rio Grande silvery minnow (Hybognathus amarus), a federally endangered species, has been classified as an herbivore, detritivore, or carnivore. During low flow conditions H. amarus is primarily an algivore; however, during flood conditions, hydrodynamic scouring reduces or eliminates benthic algal food sources. The objective of this study was to identify and characterize food resources and trophic interactions for H. amarus on a restored floodplain during an extended flood-pulse release from reservoirs using stable isotope analyses (δ¹³C and δ¹⁵N) and paleolimnology techniques. Results from stable isotope ratios indicate that H. amarus obtained carbon primarily from chironomids while aquatic invertebrates (including chironomids) obtained their carbon from macrophytes. Results from the GLIMMIX procedure indicate that the range of isotopic signatures for prey items was much broader at parallel habitats (i.e. floodplain flow parallel to main stem flow) than perpendicular (i.e. floodplain flow perpendicular to main stem flow) or leeward habitats (i.e. leeward sides of island where flow was near zero) indicating a wider selection of food resources. This study suggests that increased duration of floodplain inundation in the MRG provides vital habitats for spawning, nursery, and recruitment of threatened and endangered fish species. A combination of allochthonous and autochthonous resources best describes the nutrient and energy transfers for the Los Lunas, NM restored floodplain.     

Biogeography of ‘Cyprinella lutrensis’: intensive genetic sampling from the Pecos River ‘melting pot’ reveals a dynamic history and phylogenetic complexity

Thorough sampling is necessary to delineate lineage diversity for polytypic ‘species’ such as Cyprinella lutrensis. We conducted extensive mtDNA sampling (cytochrome b and ND4) from the Pecos River, Rio Grande, and South Canadian River, New Mexico. Our study focussed on the Pecos River due to its complex geological history and potential to harbour multiple lineages. We used geometric–morphometric, morphometric, and meristic analyses to test for phenotypic divergence and combined nucDNA with mtDNA to test for cytonuclear disequilibrium and combined our sequences with published data to conduct a phylogenetic re‐assessment of the entire C. lutrensis clade. We detected five co‐occurring mtDNA lineages in the Pecos River, but no evidence for cytonuclear disequilibrium or phenotypic divergence. Recognized species were interspersed amongst divergent lineages of ‘C. lutrensis’. Allopatric divergence among drainages isolated in the Late Miocene and Pliocene apparently produced several recognized species and major divisions within ‘C. lutrensis’. Pleistocene re‐expansion and subsequent re‐fragmentation of a centralized lineage founded younger, divergent lineages throughout the Rio Grande basin and Edwards Plateau. There is also evidence of recent introductions to the Rio Grande, Pecos and South Canadian Rivers. Nonetheless, deeply divergent lineages have coexisted since the Pleistocene.     

Microbial contamination and chemical toxicity of the Rio Grande

Background  

The Rio Grande River is the natural boundary between U.S. and Mexico from El Paso, TX to Brownsville, TX. and is one of the major water resources of the area. Agriculture, farming, maquiladora industry, domestic activities, as well as differences in disposal regulations and enforcement increase the contamination potential of water supplies along the border region. Therefore, continuous and accurate assessment of the quality of water supplies is of paramount importance. The objectives of this study were to monitor water quality of the Rio Grande and to determine if any correlations exist between fecal coliforms, E. coli, chemical toxicity as determined by Botsford's assay, H. pylori presence, and environmental parameters. Seven sites along a 112-Km segment of the Rio Grande from Sunland Park, NM to Fort Hancock, TX were sampled on a monthly basis between January 2000 and December 2002.     

No Genetic Evidence for Hybridization Between Rio Grande Sucker, Catostomus Plebeius, and the Introduced White Sucker, Catostomus Commersoni, in the Rio Grande

Hybridization with the introduced white sucker, Catostomus commerson, has been blamed in part for the decline of the Rio Grande sucker, C. plebeius, in the upper Rio Grande basin of Colorado and New Mexico but without convincing evidence. Here we report results from a genetic study of hybridization between the two species across their sympatric range in New Mexico. We used two nuclear microsatellite markers and one mitochondrial DNA marker to identify hybrids. These genetic methods detected no F1 or backcross hybrids in larvae, young-of-the-year or adults from the upper Rio Grande basin. This indicates that hybridization between the two species occurs rarely, if ever.     

The Rio Grande Complex and the Northern Plains

Abstract

The earliest component at the La Bolsa site in the Galisteo Basin of north-central New Mexico is an early manifestation of what is defined in this paper as the Quemado Phase of the proposed Rio Grande Complex. Relatively dated to about 7000 to 6000 years ago, this Proto-Archaic Phase is postulated to be ultimately rooted in the Agate Basin Complex of the northern Plains.     

Spatio‐temporal variation in parasite communities maintains diversity at the major histocompatibility complex class IIβ in the endangered Rio Grande silvery minnow

Climate change will strongly impact aquatic ecosystems particularly in arid and semi‐arid regions. Fish–parasite interactions will also be affected by predicted altered flow and temperature regimes, and other environmental stressors. Hence, identifying environmental and genetic factors associated with maintaining diversity at immune genes is critical for understanding species’ adaptive capacity. Here, we combine genetic (MHC class IIβ and microsatellites), parasitological and ecological data to explore the relationship between these factors in the remnant wild Rio Grande silvery minnow (Hybognathus amarus) population, an endangered species found in the southwestern United States. Infections with multiple parasites on the gills were observed and there was spatio‐temporal variation in parasite communities and patterns of infection among individuals. Despite its highly endangered status and chronically low genetic effective size, Rio Grande silvery minnow had high allelic diversity at MHC class IIβ with more alleles recognized at the presumptive DAB1 locus compared to the DAB3 locus. We identified significant associations between specific parasites and MHC alleles against a backdrop of generalist parasite prevalence. We also found that individuals with higher individual neutral heterozygosity and higher amino acid divergence between MHC alleles had lower parasite abundance and diversity. Taken together, these results suggest a role for fluctuating selection imposed by spatio‐temporal variation in pathogen communities and divergent allele advantage in maintenance of high MHC polymorphism. Understanding the complex interaction of habitat, pathogens and immunity in protected species will require integrated experimental, genetic and field studies.     

No quarter: Lack of refuge during flow intermittency results in catastrophic mortality of an imperiled minnow

1. Many once-perennial rivers have become intermittent. Channel drying can result in fish mortality if refuges are not available. Understanding where refuges occur and if fishes use these refuges can provide insight for species persistence and help stakeholders manage limited resources. Streamflow diversions in the Rio Grande of New Mexico can result in >60 km losses of aquatic habitat, affecting up to 30% of the range of imperiled Rio Grande silvery minnow (Hybognathus amarus). Potential refuges include areas with perennial flow below diversion dams, isolated pools, and irrigation return flows.
2. We examined spatial and temporal patterns of both adult and young-of-year Rio Grande silvery minnow collected in isolated pools that formed during streamflow intermittency from 2009 to 2019. We hypothesised that: (1) Rio Grande silvery minnow would be more numerous in pools that persisted longer; (2) they would be more numerous in isolated pools located closer to upstream areas of perennial flow, due to upstream movement to escape drying; and (3) increased rate of aquatic habitat loss each day would result in more Rio Grande silvery minnow in isolated pools.
3. During the 12 years of the study, we counted Rio Grande silvery minnow in 3,985 isolated pools that formed during streamflow intermittency. We related counts of Rio Grande silvery minnow in each pool to the maximum pool depth, rate of loss of aquatic habitat that occurred that day, and distance each pool was to an upstream barrier. In 2016, we examined persistence of 290 isolated pools until complete desiccation or reconnection with continuous flows occurred, and the factors that influenced pool persistence.
4. Deeper pools persisted for longer, but depth had a small positive effect on counts of adult Rio Grande silvery minnow and no effect on counts of young-of-year in isolated pools. Adults were more numerous in upstream isolated pools, whereas young-of-year were more numerous in downstream isolated pools. Rate of channel drying had little effect on the numbers of adult Rio Grande silvery minnow in isolated pools, but more young-of-year were stranded when the rate of drying was faster. On average, pools persisted <4 days and 263 of 290 dried completely before continuous flows returned. Only 66 of 4,749 Rio Grande silvery minnow occurred in pools that did not dry completely.
5. Rio Grande silvery minnow did not appear to escape channel intermittency; instead, they became stranded in shrinking isolated pools that did not persist long enough to act as refuges for fishes. Lack of refuge during channel intermittency would result in catastrophic mortality of fishes through complete desiccation of pools if there were no management actions, such as translocating fish. To increase persistence through streamflow intermittency, conservation actions should match the species response to intermittency by ensuring the availability of perennial-water refuges at the appropriate spatial and temporal scale.

     

Habitat and resource use by larval and juvenile fishes in an arid-land river (Rio Grande, New Mexico)

1. Studies of mesic temperate and tropical rivers suggest an important role for floodplain habitats as nursery areas for larval and juvenile fishes. In arid‐land rivers the extent and duration of flooding is diminished and habitats and resources used by larval fishes are poorly known. Our study documented habitat and resource use of larval fishes in the Rio Grande, New Mexico, an arid‐land river. 2. Spatial and temporal distribution of larval and juvenile fishes and their inferred microhabitat preferences were studied during spring, summer and autumn, 2003. Stable carbon (¹³C : ¹²C) and nitrogen (¹⁵N : ¹⁴N) isotope ratios were measured to identify nutrient sources and characterise trophic positions of young‐of‐year fishes in this system. 3. Some fishes recruited during high flows (in spring), whereas others recruited during low‐flow periods in late summer. Regardless of the timing of reproduction, microhabitats with lower current velocity and higher temperature appeared to serve as vital nursery grounds for Rio Grande fishes. Ephemeral backwaters and disconnected side channels held the highest abundance and diversity of larvae and juveniles. 4. Stable isotope analyses revealed that fish larvae obtained carbon predominately from algal production in early summer, but used organic carbon derived from emergent macrophytes as river discharge decreased in mid‐summer. This shift may have been facilitated by microinvertebrate prey that grazed down edible algae and then switched to macrophytes in mid‐summer. Nitrogen isotope ratios did not differ among species or early life stages, suggesting that larval and juvenile fishes use similar food resources, especially when restricted to isolated pools in summer.     

Geographic distribution of genetic diversity in populations of Rio Grande Chub <Emphasis Type="Italic">Gila pandora</Emphasis>

In the southwestern United States (US), the Rio Grande chub (Gila pandora) is state-listed as a fish species of greatest conservation need and federally listed as sensitive due to habitat alterations and competition with non-native fishes. Characterizing genetic diversity, genetic population structure, and effective number of breeders will assist with conservation efforts by providing a baseline of genetic metrics. Genetic relatedness within and among G. pandora populations throughout New Mexico was characterized using 11 microsatellite loci among 15 populations in three drainage basins (Rio Grande, Pecos, Canadian). Observed heterozygosity (H_O) ranged from 0.71–0.87 and was similar to expected heterozygosity (0.75–0.87). Rio Ojo Caliente (Rio Grande) had the highest allelic richness (A_R = 15.09), while Upper Rio Bonito (Pecos) had the lowest allelic richness (A_R = 6.75). Genetic differentiation existed among all populations with the lowest genetic variation occurring within the Pecos drainage. STRUCTURE analysis revealed seven genetic clusters. Populations of G. pandora within the upper Rio Grande drainage (Rio Ojo Caliente, Rio Vallecitos, Rio Pueblo de Taos) had high levels of admixture with Q-values ranging from 0.30–0.50. In contrast, populations within the Pecos drainage (Pecos River and Upper Rio Bonito) had low levels of admixture (Q = 0.94 and 0.87, respectively). Estimates of effective number of breeders (N _b ) varied from 6.1 (Pecos: Upper Rio Bonito) to 109.7 (Rio Grande: Rio Peñasco) indicating that populations in the Pecos drainage are at risk of extirpation. In the event that management actions are deemed necessary to preserve or increase genetic diversity of G. pandora, consideration must be given as to which populations are selected for translocation.     

Population structure and genetic management of Rio Grande cutthroat trout (Oncorhynchus clarkii virginalis)

The Rio Grande cutthroat trout, Oncorhynchus clarkii virginalis, has declined precipitously over the past century, and currently exhibits a highly fragmented distribution within the Canadian, Pecos and Rio Grande river systems of the western United States. The relationships between populations in the three river drainages, and between O. c. virginalis and the closely related taxa O. c. pleuriticus and O. c. stomias, are not well understood. In order to guide management decisions for the subspecies, we investigated the distribution of variation at 12 microsatellite loci and two regions of the mitochondrial genome. We observed a high level of genetic differentiation between O. c. virginalis populations occupying different headwater streams (global F_st = 0.41). However, we found evidence for previous gene flow within the Rio Grande drainage, indicating that inter-population differentiation may have been exacerbated by the recent effects of population fragmentation. Despite large-scale anthropogenic movement of individuals from the Rio Grande into the Canadian and Pecos, the genetic signature of long-term evolutionary independence between the three drainages has been retained.     

Three new species,four new records and an updated checklist of Habenaria (Orchidaceae) from Rio Grande do Sul,Brazil

Three new species of Habenaria (Orchidaceae) section Nudae from Rio Grande do Sul, southern Brazil, are described and illustrated: Habenaria australis, H. kleinii and H. sobraliana. These are the first records of H. sect. Nudae for the state. Based on the examination of living and dried specimens, a total of 33 species and 400 collections of Habenaria were recorded for Rio Grande do Sul. Based on this survey, an updated checklist of the genus Habenaria for Rio Grande do Sul has been compiled. Four species are known only from this state, while seven other species are restricted to southern Brazil, Argentina and Uruguay. Habenaria hieronymi, previously known only from Argentina, is recorded for the first time from Brazil, and H. brachyphyton, H. ekmaniana and H. melanopoda are new records for Rio Grande do Sul.     

C : N : P stoichiometry of dominant riparian trees and arthropods along the Middle Rio Grande

1. We examined the role of flooding on the leaf nutrient content of riparian trees by comparing the carbon : nitrogen : phosphorus (C : N : P) ratio of leaves and litter of Rio Grande cottonwood (Populus deltoides ssp. wislizenii) in flood and non‐flood sites along the Middle Rio Grande, NM, U.S.A. The leaf C : N : P ratio was also examined for two non‐native trees, saltcedar (Tamarix chinensis) and Russian olive (Elaeagnus angustifolia), and six species of dominant riparian arthropods. 2. Living leaves and leaf litter of cottonwoods at flood sites had a significantly lower leaf N : P ratio and higher %P compared with leaves and litter at non‐flood sites. A non‐flood site downstream from wastewater effluent had a significantly lower litter C : N ratio than all other sites, suggesting N fertilisation through ground water. The non‐native trees, saltcedar and Russian olive, had higher mean leaf N content, N : P ratio, and lower C : N ratio compared with cottonwoods across study sites. 3. Riparian arthropods ranged from 5.2 to 7.1 for C : N ratio, 56–216 for C : P ratio, and 8.9–34 for N : P ratio. C content ranged from 25 to 52% of dry mass, N content from 4.7 to 10.8%, and P content from 0.59 to 1.2%. Differences in stoichiometry between high C : nutrient leaf litter and low C : nutrient invertebrates suggests possible food‐quality constraints for detritivores. 4. These results suggest that spatial and temporal variation in the C : N : P ratio of cottonwood leaves and leaf litter is influenced by surface and subsurface hydrologic connection within the floodplain. Reach‐scale variation in the elemental composition of riparian organic matter inputs may have important implications for decomposition, nutrient cycling, and food webs in river floodplain systems.     

Nest site fidelity and dispersal of Rio Grande wild turkey hens in Texas

Rio Grande wild turkey (Meleagris gallopavo intermedia) nests suffer high predation rates exceeding 65%, which may limit recruitment. We evaluated post-nesting movements of reproductively active female Rio Grande wild turkeys. We monitored 194 nesting attempts between 2005 and 2010 and documented 17% and 32% overall apparent nest success for the Edwards Plateau and Central Rio Grande Plains study regions, respectively. Rio Grande wild turkey hens move approximately 1.2 km (SD = 0.7) between nesting attempts within a nesting season and approximately 1.4 km (SD = 1.6) between initial nesting attempts among years. Rio Grande wild turkey hens selected open areas with moderate woody cover for nesting ( = 37.7%; range = 3.0–88.2%). Patchiness of vegetation in the nesting landscape also was borne out by typically low edge-to-area ratios ( = 0.20; range = 0.040–0.732). We found no clear pattern in movement distance and either landscape composition or edge-to-area ratio for within or between breeding season nest site selection for either the Edwards Plateau or Central Rio Grande Plains study region. Based on our results, movement distances post-nest failure do not seem to influence habitat selection. © 2012 The Wildlife Society.     

Geophilic dermatophytes recovered from Rio Grande do Sul soil

Summary A total of 109 soil samples from a very large zone of Rio Grande do Sul (Brasil) was studied for the presence of dermatophytes.M. gypseum andK. ajelloi were the dermatophytes isolated.

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Sumário 109 amostras do solo de uma ampla zona do Rio Grande do Sul (Brasil) foram estudadas.OM. gypseum e oK. ajelloi foram os únicos dermatófitos isolados.É comentada a literatura brasileira sôbre isolamento dos dermatófitos do solo. São comparados dados do isolamento de dermatófitos do solo do Rio Grande do Sul e Uruguay — zonas fisiogeográficas semelhantes — e dos diversos estados brasileiroa — zonas fisiogeográficas distintas.

     

A Survey Of Paleo-Indian Sites Along the Middle Rio Grande Drainage

Abstract

Sandia Cave is so important to the Paleo-Indian picture that it dominates the “classic” hunting site complex in the middle Rio Grande. As a result there is a tendency to minimize the considerable variety of other “classic” hunting points that have been found in the region, expecially in the Estancia Valley where such pluvial lakes as Lake Estancia and the Galisteo Basin once existed.

In addition 3 sites in the Rio Grande valley exhibit a different cultural horizon associated with the period of extinct fauna. This complex is characterized by lack of projectile points, a dearth of milling stones, and the dominance of crude scrapers, and choppers.     

Invertebrate Abundance at Rio Grande Wild Turkey Brood Locations

ABSTRACT Abundance of Rio Grande wild turkeys (Meleagris gallopavo intermedia) has declined in the southeastern Edwards Plateau (EP) of Texas, USA, whereas abundance has remained stable in the northwestern EP. Invertebrates are a critical protein source for poults < 6 weeks posthatch. We collected invertebrates at brood and paired locations in both the stable and declining regions. Our objective was to determine if differences in invertebrate abundance existed in regions typified by declining versus stable Rio Grande wild turkey abundance. We found no difference in invertebrate abundance between brood or paired locations within regions, but invertebrate abundance, whether measured as dry mass or frequency, was greater in the stable region. Decreased invertebrate abundance may have contributed to the decline in Rio Grande wild turkey abundance in the southeastern Edwards Plateau.     

Hirsutella thompsonii a fungal parasite of the citrus rust mitePhyllocoptruta oleivora in the Rio Grande Valley of Texas

Hirsutella thompsonii, a hyphomycetous fungus, was found attacking the citrus rust mitePhyllocoptruta oleivora for the first time in May, 1972, in the Lower Rio Grande Valley of Texas. Sharp reductions in mite populations occurred during this period. The fungus was isolated from mites collected from citrus fruits and leaves. The parasitic nature and the distribution of the pathogen are described.     

Genetic and morphologic variation of the Pecos assiminea,an endangered mollusk of the Rio Grande region,United States and Mexico (Caenogastropoda: Rissooidea: Assimineidae)

Assiminea pecos is an endangered species of amphibious gastropod that occupies four widely separated portions of the Rio Grande region in the southwestern United States (Pecos River basin) and northeastern Mexico (Cuatro Cienegas basin). Our statistical and discriminant function analyses of shell variation among the disjunct populations of this species indicate that Mexican specimens differ in their morphometry from those of the United States and can be diagnosed by several characters. We also analyzed variation in the mitochondrial genome by sequencing 658 bp of mitochondrial COI from populations of A. pecos, representatives of the other three North American species of Assiminea, and several outgroups. Our results indicated substantial divergence of the Mexican population of A. pecos, which was consistently depicted as a monophyletic unit nested within or sister to the shallowly structured group comprised of American members of this species. Consistent with our findings, we describe the Mexican population as a new species, which is provisionally placed in the large, worldwide genus Assiminea pending further study of the phylogentic relationships of the North American assimineids. Our molecular data suggest that the Rio Grande region assimineids, which are among the few inland members of the otherwise estuarine subfamily Assimineinae, diverged from coastal progenitors in the late Miocene, with subsequent Pleistocene vicariance of Mexican and American species perhaps associated with development of the modern, lower course of the Rio Grande. Handling editor: K. Martens     

Influence of Experimental Flooding on Litter Dynamics in a Rio Grande Riparian Forest,New Mexico

Flow regulation, which has largely eliminated flooding along the Rio Grande in central New Mexico, has substantially changed the riparian ecosystem. We investigated managed flooding as a means of restoring ecosystem function. After collecting baseline data during 1991 and 1992 in two riparian forest sites that had not flooded for about 50 years, we flooded an experimental site for 27–32 days during late spring of 1993, 1994, and 1995, leaving the reference site unflooded. During the final year of the study we compared these sites to two additional sites located within the riverside levee, one of which has been flooding naturally while the second remained largely unflooded. Three years of experimental flooding did not change the total biomass of either woody debris or forest-floor litter at the experimental flood site. Both woody debris and forest-floor litter, however, were significantly lower at the natural flood site than at the experimental flood site and two unflooded sites. Leaf and wood decomposition rates increased with flooding. The decay rate for cottonwood logs at the unflooded site (0.010 per year) predicted a half-life of 69.3 years, while the decay rate of 0.065 per year after 3 years of experimental flooding predicted a half-life of 10.6 years. This suggests that a decade of annual flooding may be used to restore the organic debris to pre-regulation levels. Flooding may also have caused an increase in litter production. These results suggest that experimental flooding has initiated a process of restoring ecosystem function within the riparian forest.