Application of otolith microchemistry to estimate the migratory history of Japanese eel Anguilla japonica on the Sanriku Coast of Japan

The age and migratory history of the Japanese eel, Anguilla japonica Temminck & Schlegel, collected in Miyako Bay along the Sanriku coast of Japan, was examined using the otolith microstructure and analysis of strontium (Sr) and calcium (Ca) concentrations conducted with wavelength dispersive X‐ray spectrometry by an electron microprobe. The line analysis of Sr : Ca ratios along the life history transect of each otolith showed a peak (ca. 15–17 × 10^?3) which corresponded with the period of their leptocephalus and early glass eel stages in the ocean. The mean Sr : Ca ratios from the elver mark to the otolith edge indicated that there were eels with several general categories of migratory history, including sea eels that never entered freshwater (average Sr : Ca ratios, ≥6.0 × 10^?3), and others that entered freshwater for brief periods but returned to the estuary or bay. This evidence of the occurrence of sea eels in this northern area indicates that Japanese eels of the Sanriku coast do not necessarily migrate into freshwater rivers during recruitment as do glass eels at the beginning of their growth phase; even those that do enter freshwater may later return to the marine environment. Thus, anguillid eel migrations into freshwater are clearly not an obligatory migratory pathway, but rather a facultative catadromy with seawater or estuarine residents as an ecophenotype.     

Microprobe analyses of anadromous Arctic charr, Salvelinus alpinus, otoliths to infer life history migration events

Otoliths of Arctic charr, Salvelinus alpinus, from north Labrador were examined to gather life history information pertinent to anadromous migrations. Wavelength dispersive electron microprobe measurements confirm the presence of strontium in otolith tissue. Trace element analyses of charr otoliths imply that otolith strontium/calcium concentration ratios are related to external environmental factors with salinity having a great influence. Otoliths clearly record habitat shifts consistent with migration across major salinity boundaries. Most charr first migrate to sea following at least 2 years in freshwater. Generally, when anadromy begins, it continues annually. Robust relationships in otolith chemistry, combined with macrostructure patterns in field-captured specimens, provide time-series data describing individual migrational histories. Validation studies are still required in order to couple information contained within daily increments with chemical analyses to infer additional temporal events in diadromous migrations. Received: 6 November 1996 / Accepted: 18 May 1997     

Using human demographic history to infer natural selection reveals contrasting patterns on different families of immune genes

Detecting regions of the human genome that are, or have been, influenced by natural selection remains an important goal for geneticists. Many methods are used to infer selection, but there is a general reliance on an accurate understanding of how mutation and recombination events are distributed, and the well-known link between these processes and their evolutionary transience introduces uncertainty into inferences. Here, we present and apply two new, independent approaches; one based on single nucleotide polymorphisms (SNPs) that exploits geographical patterns in how humans lost variability as we colonized the world, the other based on the relationship between microsatellite repeat number and heterozygosity. We show that the two methods give concordant results. Of these, the SNP-based method is both widely applicable and detects selection over a well-defined time interval, the last 50 000 years. Analysis of all human genes by their Gene Ontology codes reveals how accelerated and decelerated loss of variability are both preferentially associated with immune genes. Applied to 168 immune genes used as the focus of a previous study, we show that members of the same gene family tend to yield similar indices of selection, even when located on different chromosomes. We hope our approach will provide a useful tool with which to infer where selection has acted to shape the human genome.     

Differential life history responses of several pelagic Daphnia clones differing in migratory behaviour

Females of the hybrid Daphnia galeata × hyalina were isolated from a natural population in Lake Maarsseveen and from these individuals clones were cultured in the laboratory. Some clones were assumed to be migrating and some non-migrating. Life history experiments were performed with these clones in the presence and absence of fish kairomones. Results show that clones differed in life history strategy in concert with their presumed migration strategies which suggests a link between life history and behaviour. However, no sharp border exists between migrating and non-migrating clones since a gradual response pattern was found for the traits investigated. In the absence of fish kairomones, the relation between length at maturity and number of eggs was found to differ between the clones of the non-migrating and the migrating group. The latter had a lower number of eggs at similar length values. In the presence of fish kairomones, the length–clutch size relation was the same. However, non-migrating clones were smaller at the age at maturity and had fewer eggs. Although clones of both groups were thus found to differ significantly, overlap existed. Age at maturity was found to be the same.     

Biology and life history of Dabry's sturgeon, Acipenser dabryanus, in the Yangtze River

Dabry's sturgeon, Acipenser dabryanus, is a relatively small (130 cm, 16 kg) and now rare sturgeon restricted to the Yangtze River Basin. It behaves as a resident freshwater fish, does not undertake long distance migrations (except for spawning), and lives in a variety of habitats. It historically spawned in the upper Yangtze River, but the spawning sites are unknown. Acipenser dabryanus reaches maturity earlier than do other Chinese sturgeons, which gives the species aquaculture potential, and artificial spawning has been carried out. However, the native population in the Yangtze has sharply declined in the last two decades due to overfishing, pollution and habitat alteration and destruction, especially since the construction of the Gezhouba Dam, which was built in 1981 across the Yangtze River at Yichang, Hubei Province. Since 1981, Dabry's sturgeon rarely occurs below the Gezhouba Dam because downstream movements are blocked. Clearly, conservation of Dabry's sturgeon must be emphasized. Conservation methods may include protecting habitats, controlling capture and stock replenishment.     

Direct analysis of human blood (mothers and newborns) by energy dispersive X-ray fluorescence

This work is an application of energy dispersive X-ray fluorescence (EDXRF) as analytical technique for trace element determination in human tissues. Potassium (K), calcium (Ca), iron (Fe), copper (Cu), zinc (Zn), bromine (Br), rubidium (Rb) and lead (Pb) were determined directly in blood samples from 66 mothers at delivery after full-term pregnancies. The corresponding 66 cord-blood samples of the newborns were also analysed, in order to find element correlations between maternal and newborn blood at birth. The studied samples were obtained from mothers aged between 15 and 39 years old, the gestational age being between 35 and 41 weeks and the newborns' weight between 2.310 and 4.310 kg. Samples were lyophilised and analysed without any chemical treatment. Very low levels of Pb were found both in maternal and fetal cord blood samples. Cu values ranged from 3 to 13 microg g-1, both for mothers and children. A correlation between Cu and Fe concentrations in maternal and fetal cord blood was found. Zn is considered as one of the key elements in newborn health. Concentrations between 10 and 40 microg g-1 were measured. A positive correlation between Br levels in mothers and children was observed. Positive correlations for mothers were observed between Zn and Rb as well as K and Fe. The corresponding correlations in fetal cord blood samples were not observed, however positive correlations were found between Ca and K; Cu and Fe. The mean concentrations for each element were similar in maternal and in fetal cord blood, except for Cu and Zn, being higher in maternal samples. No correlations between element concentrations and pathologies of the mothers were observed.     

Differential distribution of some elements in a camera type eye-lens as revealed by energy dispersive x-ray micro-analysis

Differential distribution of some elements have been detected in the cortex and medulla of the camera type eye-lens in a fresh water fish, Notopterus sp., using energy dispersive X-ray spectroscopy. This unique pattern of elemental distribution explains the less understood mechanism by which the optical properties of different parts of the fish lens are altered continuously and differentially during growth. The study also suggests the possible optical roles of some elements in ocular refractive structures.     

Feeding motivation and response to predation risk in Atlantic salmon parr adopting different life history strategies

Feeding intensity was measured before (baseline level) and after (disturbed level) brief exposure to a potential predator in groups of 0+ Atlantic salmon, Salmo salar. parr destined to follow either a fast-growth, early-smolting life history (upper modal group or UMG fish) or a slow-growth, late-smolting life history (lower modal group or LMG fish). Feeding intensity decreased following exposure to the predator. While the absolute decrease in feeding intensity is constant regardless of baseline level, the proportionate decrease is negatively related to pre-presentation feeding intensity. Parr that are strongly motivated to feed thus maintain a higher food intake and incur greater risks when foraging in the presence of a predator. No differences in baseline or disturbed feeding intensity of UMG and LMG parr were found up to September of their first year. Previous work has shown that baseline feeding intensities decrease in LMG fish after September but increase in UMG fish. In the present study, these differences were reflected in greater disturbed feeding intensities in UMG fish, but fish destined to follow different life history patterns do not differ in risk-taking, once these differences in baseline feeding motivation have been taken into account.     

Using genome scans of DNA polymorphism to infer adaptive population divergence

Elucidating the genetic basis of adaptive population divergence is a goal of central importance in evolutionary biology. In principle, it should be possible to identify chromosomal regions involved in adaptive divergence by screening genome-wide patterns of DNA polymorphism to detect the locus-specific signature of positive directional selection. In the case of spatially separated populations that inhabit different environments or sympatric populations that exploit different ecological niches, it is possible to identify loci that underlie divergently selected traits by comparing relative levels of differentiation among large numbers of unlinked markers. In this review I first address the question of whether diversifying selection on polygenic traits can be expected to produce predictable patterns of allelic variation at the underlying quantitative trait loci (QTL), and whether the locus-specific effects of selection can be reliably detected against the genome-wide backdrop of stochastic variability. I then review different approaches that have been developed to identify loci involved in adaptive population divergence and I discuss the relative merits of model-based approaches that rely on assumptions about population structure vs. model-free approaches that are based on empirical distributions of summary statistics. Finally, I consider the evolutionary and functional insights that might be gained by conducting genome scans for loci involved in adaptive population divergence.     

Effects of life history variation on size and growth in stream-dwelling Atlantic salmon

A large size variation amongst life histories for stream-dwelling Atlantic salmon Salmo salar was found and the relative effect of life histories on size varied over time. As early as December (age 0+ years), fish that later smolted at age 2+ years were significantly larger than fish that did not smolt at age 2+ years. In contrast, there were no mass differences at age 0+ years between fish that would mature or not at age 1+ years (October). The mass differences between smolts and non-smolts persisted until smolting, and differences between mature and immature fish first appeared in May (age 1+ years). Following September (age 1+ years), there was also a significant interaction between smolting and maturity. Previously mature and immature age 2+ year smolts were not significantly different in size, but immature age 2+ year non-smolts were much lighter than mature age 2+ year non-smolts. Based on mass differences, the apparent 'decision' to smolt occurred c . 5 months before (winter, age 0+ years) the decision to mature (late spring, age 1+ years). In addition to strong seasonal growth variation, sizes of freshwater Atlantic salmon were largely structured by the complex interaction between smolt-age and maturity.     

Using matrix of thresholding partial correlation coefficients to infer regulatory network

DNA arrays measure the expression levels for thousands of genes simultaneously under different conditions. These measurements reflect many aspects of the underlying biological processes. A method based on the matrix of thresholding partial correlation coefficients (MTPCC) is proposed for network inference from expression profiles. It includes three main parts: (1) hierarchical cluster analysis, (2) cluster boundaries establishment, and (3) regulatory network inference. The method was applied to the expression data of 2467 genes in Saccharomyces cerevisiae measured under 79 different conditions [Eisen, M.B., Spellman, P.T., Brown, P.O., Botstein, D., 1998. Cluster analysis and display of genome-wide expression patterns. Proc. Natl. Acad. Sci. 95, 14863-14868]. Using hierarchical clustering and cluster boundaries establishment, the 2467 genes were grouped into 12 clusters. The expression profiles of each cluster were expressed as a set of expression levels average over the cluster that constituted genes of each condition. Then the expression data of these clusters were subjected to the analysis of partial correlation, and the significance of each element in the obtained partial correlation coefficient matrix (PCCM) was examined by a permutation test. The corresponding undirected dependency graph (UDG) was obtained as a model of the regulatory network of S. cerevisiae. The veracity of the network was evidenced by the consistency of our results with the collected results from experimental studies.     

Experimental and observational studies of seasonal interactions between overlapping life history stages in a migratory bird

Prior to reproduction, migratory animals are at the juxtaposition of three life history stages in which they must finish the non-breeding stage, initiate and complete migration, and prepare for the onset of breeding. However, how these stages interact with one another is not fully understood. We provide evidence that, for migratory birds that begin breeding development prior to departure from non-breeding sites, the level of breeding preparation can drive migration phenology, a critical behavioral determinant of reproductive success. Specifically, male American redstart (Setophaga ruticilla) plasma androgen levels, which increase in males during the period leading into migration, were positively correlated with energetic condition. We empirically tested the hypothesis that elevated androgen simultaneously supports migratory and breeding preparation in a hormone manipulation field experiment. Males with testosterone implants showed advanced preparation for migration and breeding, and ultimately departed on migration earlier than controls. It is assumed that early departure leads to early arrival at breeding areas, which increases breeding success. Collectively, our observational and experimental results demonstrate how overlapping life history stages can interact to influence important components of an individual's fitness. This highlights the critical need for understanding population processes across the full life cycle of an organism to better understand the ecological and evolutionary origins of complex life history events.