Detection of coconut cadang-cadang viroid-like sequences in oil and coconut palm and other monocotyledons in the south-west Pacific

Fractionation, electroblotting and molecular hybridisation of nucleic acids extracted from tissue of African oil palm and coconut palm and some other monocotyledonous species, collected in several areas of the south-west Pacific region, demonstrated the presence of small nucleic acids with nucleotide sequences and secondary structure similar to coconut cadang-cadang viroid (CCCVd). The oil palms which contained CCCVd-related molecules showed orange leaf spots resembling those described for oil palm naturally infected with CCCVd in the Philippines, and also characteristic of a condition known as "genetic orange spotting" (GOS). We provide preliminary evidence that GOS is an infectious disorder caused by a viroid. The coconut palms did not show symptoms typical of cadang-cadang disease, but sometimes were chlorotic, stunted, or had a reduced yield. The possibility that the isolates represent variants of CCCVd is discussed. The data suggest that viroids with nucleotide sequences similar to CCCVd occur widely in palms and other monocotyledons outside the Philippines.     

Detection of Coconut cadang-cadang viroid sequences in oil and coconut palm by ribonuclease protection assay

A ribonuclease protection assay (RPA) has been developed for detecting Coconut cadang-cadang viroid (CCCVd) sequences. An RNA probe complementary to full-length CCCVd₂₄₆ was used, terminating at nucleotide 65 in the upper conserved region, and linked to a non-viroid 5' sequence, which acted as an internal control for ribonuclease activity. Extracts from CCCVd-infected coconut ( Cocos nucifera ) and African oil ( Elaeis guineensis ) palms protected three major fragments of approximately 250, 125 and 50 nt and a variable number of minor fragments. Extracts of healthy coconut palms, Potato spindle tuber viroid -infected tomato and transfer RNA did not protect the probe. The approximately 250 nt fragment is predicted to indicate the presence of monomers and dimers of circular CCCVd₂₄₆, linear CCCVd₂₄₆ with the same termini as the probe and point mutants of these forms. The origin of smaller protected fragments is discussed. RPA-detected CCCVd sequences in 13 of 18 oil palms surveyed in a commercial plantation in Malaysia. Signal intensity varied between the positive oil palms and was generally lower than in coconut palms infected with CCCVd. An infection phenotype was implied but not confirmed by the observation that in a group of 10 oil palms with orange leaf spotting, 9 contained CCCVd, whereas in a group of 8 palms without orange spotting, the viroid was detected in 4. Of four coconut palms in Sri Lanka shown by dot-blot assay to contain CCCVd-related RNA, one was shown by RPA to be positive for the CCCVd₂₄₆ sequence. RPA is therefore a robust and sensitive test for CCCVd sequences, and our results show that sequences closely related to CCCVd₂₄₆ are not confined to the Philippines.     

The Oryctes virus: its detection, identification, and implementation in biological control of the coconut palm rhinoceros beetle, Oryctes rhinoceros (Coleoptera: Scarabaeidae)

In view of the increasing and devastating damage by rhinoceros beetle (Oryctes rhinoceros) to coconut palms in the middle of last century, many efforts were made to find an efficient natural control factor against this pest, which could not be controlled by pesticides. The basic procedures of these monitoring programmes are outlined together with the final detection of a virus disease in oil palm estates in Malaysia in 1963. In extensive laboratory studies, the virus was isolated and identified as the first non-occluded, rod-shaped insect virus, morphologically resembling the baculoviruses. Infection experiments clarified the pathology, histopathology, and virulence of the virus and demonstrated that the virus was extremely virulent to larvae after peroral application. These findings encouraged the first pilot release of virus in 1967 in coconut plantations of Western Samoa where breeding sites were contaminated with virus. Surprisingly, the virus became established in the Samoan rhinoceros beetle populations and spread autonomously throughout the Western Samoan islands. As a consequence, there was a drastic decline of the beetle populations followed by a conspicuous recovery of the badly damaged coconut stands. This unexpected phenomenon could only be explained after it was shown that the adult beetle itself is a very active virus vector and thus was responsible for the efficient autodissemination of the virus. The functioning of the beetle as a 'flying virus factory' is due to the unique cytopathic process developing in the midgut after peroral virus infection. Pathological details of this process are presented. Because of the long-term persistence of the virus in the populations, rhinoceros beetle control is maintained. Incorporation of virus into integrated control measures and successful virus releases in many other countries are recorded.     

Evaluation of lignocellulosic biomass from coconut palm as substrate for cultivation of Pleurotus sajor-caju (Fr.) Singer

The lignocellulosic biomass from coconut palm (Cocos nucifera Linn.) such as bunch waste (spathe+spadices), leafstalk (petiole), leaflets and coir pith (by-product from coir processing industry) were evaluated as substrates for cultivation of oyster mushroom, Pleurotus sajor-caju (Fr.) Singer. A low-cost mushroom shed built exclusively of coconut materials such as coconut wood and plaited coconut leaves inside a coconut plantation was used for spawn run and cropping. Leafstalk and bunch waste were superior to leaflets and coir pith in producing significantly more edible biomass of mushrooms. Biological efficiency of 58.9% was obtained in leafstalk, followed by bunch waste (56.9%), coir pith (39.7%) and leaflets (38.2%). The yield of sporophore was positively related to cellulose content and the cellulose : lignin ratio of the substrates.     

Comparison of eight isolates of beet yellows virus by filter hybridisation and enzyme-linked immunosorbent assay

An improved method of virus purification was developed for beet yellows virus (BYV), which resulted in higher virus yields and fewer broken particles than from other methods. Double antibody sandwich enzyme-linked immunosorbent assay (ELISA) was not able to differentiate eight isolates of BYV, but filter hybridisation analyses, using cloned cDNA from one of the isolates as the probe was successful in distinguishing some of these isolates. The degree of hybridisation did not correlate with the severity of the symptoms associated with infection by isolates. Therefore, hybridisation cannot be used as a means of predicting symptom severity. The hybridisation data also indicated that the isolates consisted of stable mixtures of strains. Cross-hybridisation of clones derived from one isolate indicated that certain areas of the BYV genome cloned preferentially to other areas.     

Investigation of varicella-zoster virus DNA in lymphocyte subpopulations by quantitative PCR assay

To investigate the nature of viremia during the acute phase of varicella, we studied the viral load in nine otherwise healthy children with varicella. Plasma and peripheral blood mononuclear cells (PBMC) were obtained, then PBMC were divided into CD4+T, CD8+T, and B lymphocytes and monocyte/macrophage fractions. The viral DNA in each component was quantified using a real-time quantitative polymerase chain reaction assay. Varicella-zoster virus (VZV) DNA was detected in plasma, PBMC and all subpopulations. The amount of viral DNA was similar in each PBMC subpopulation, suggesting that each lymphocyte fraction and monocytes carry similar amounts of VZV DNA during viremia.     

Long-distance dispersal of the coconut palm by migration within the coral atoll ecosystem

Background

The location of the original home of the coconut palm, Cocos nucifera, and the extent of its natural dispersal are not known. Proponents of a South American origin must explain why it is not indigenous there and why it shows greatest diversity in southern Asia. Conversely, proponents of an Asian origin must explain why there are no Asian Cocoseae and why the closest botanical relative to Cocos is in South America. Both hypotheses share the common problems of how, when, where and in what directions long-distance dispersal occurred.

Hypothesis

These difficulties are resolved by accepting that C. nucifera originated and dispersed by populating emerging islands of the coral atoll ecosystem, where establishment conditions impose high selection pressures for survival. When lifted by wave action onto virtually sterile, soilless coralline rocks just above sea level and exposed to the full impact of the sun, seednuts must germinate, root and establish vigorous populations. The cavity within the nut augments the buoyancy provided by the thick husk, which in turn protects the embryo and, by delaying germination, simultaneously extends viability while floating and provides a moisture-retentive rooting medium for the young seedling. These adaptations allow coconuts to disperse widely through the coral atoll ecosystem.

Conclusions

The monthly production of fruit and the long floating duration ensure that viable seednuts are always available in the lagoon to replace those destroyed by hurricanes and tsunamis, or to populate newly emerged coral atolls elsewhere. Long-distance dispersal is secondary, because it was the spontaneous, independent migration of coral polyps on a prolonged geological time scale that generated new coral atolls in new areas where the coconuts would be amongst the earliest inhabitants. The coconut palm became an intermittent, itinerant, pioneer endemic there, and also on suitable beaches on volcanic or large islands and continental coastlines.     

Localisation and movement of Plum pox virus in apricot stem tissues

Localisation and movement of Plum pox virus (PPV), sharka disease, in stem tissues of susceptible and resistant apricot (Prunus armeniaca L.) cultivars was studied. Two different assays were performed. In the first assay, apricot cultivars were grafted on to a non‐inoculated GF305 peach rootstock and, after two months, the sprouted apricot was inoculated by chip‐grafting. In the second assay, apricot cultivars were grafted on to a previously chip‐inoculated GF305 showing strong PPV symptoms. Localisation of virus was studied in apricot stem by immuno‐tissue printing and sharka symptoms in GF305 and apricot leaves were also observed. Virus was mainly localised in the xylem, and sometimes in the cortex and pith. Results revealed that, while all the cultivars allowed limited virus movement from the inoculation point, only the susceptible cultivars (Screara, Bebeco and Colomer) allowed long distance movement and even showed symptoms in leaves.     

Studies on the methods of inorganic nutrient application in coconut

Summary Using carrier free³²P, tagged single superphosphate and⁸⁶Rb, the efficiency of different methods of plant injection and soil placement techniques for fertilizer application was examined. In the plant injection techniques the radioactivity was fed to the palms through growing roots tips, cut ends of roots, stem injection and leaf axils. The application of radioactivity through the cut ends of roots was most efficient since³²P was detected in 10 m tall palms, four hours after application. In stem, leaf axil and growing roots tips injection the³²P was detected after 8, 12 and 18 h. Out of four methods of soil application, the quickest recovery of³²P in the palms was detected after 7 days of placement when applied by the hole method. The³²P activity in the palms through circular trenches, strips and basin methods was recorded after 8, 8 and 11 days of application respectively. The accumulation of⁸⁶Rb was significantly higher than³²P. With plant injection technique the accumulation of activity was found to be significantly higher than with soil placement methods. The rate of radioactivity absorption was 10 to 60 time faster in the former technique as compared to that of the latter. The application of radioactivity through cut ends of roots and circular trench methods, were found to be better and may be recommended for nutrient application in coconut.     

The epizootiology of the baculovirus of the coconut palm rhinoceros beetle (Oryctes rhinoceros) in Tonga

The incidence and distribution of the baculovirus of the coconut palm rhinoceros beetle was determined in Tongatapu, Tonga, 7 years after being first introduced. Surveys showed the virus to be spread throughout the beetle population, affecting 14.6% of breeding sites and over 84% of all adult beetles taken. Counts of damaged palms and of breeding site occupancy indicated that beetle numbers had remained at low levels. It appears that the virus has the potential for long-term control of beetle populations in these habitats.     

Long-term effects of experimental nitrogen additions on foliar litter decay and humus formation in forest ecosystems

Decomposition rates and N dynamics of foliar litter from 4 tree species were measured over a 72 month period on the Chronic Nitrogen Addition plots at the Harvard Forest, Petersham MA, beginning in November 1988. Plots received nitrogen additions of 0, 5 and 15 g N m^-2yr^-1 in two different stand types: red pine and mixed hardwood. Bags were collected in August and November of each year and litter analysed for mass remaining, nitrogen, cellulose and lignin content. Mass remaining was significantly greater for litter in nitrogen treated plots than in control plots after 48 months. Lignin content of litter was significantly higher with nitrogen treatments but there was little effect of treatment on cellulose content. N concentration was similar between treatments, but greater mass remaining in treated plots resulted in a higher total amount of N in humus produced in the high N plot. This mechanism could be a sink for up to 1.5 g N·m^-2yr^-1 of the 1.5 g N·m^-2yr^-1 added annually to the high N plots. Reduced decomposition rates in conjunction with increased lignin accumulation could impact global carbon sequestration as well.     

椰子油对变形链球菌抑菌作用的体外研究

目的 研究椰子油对变形链球菌的生长抑制作用,通过观察其对生物膜活性、产酸及粘附的影响,探讨其在口腔中防龋的作用。方法 采用96孔微量板液体稀释法进行抑菌试验,并测得最低抑菌浓度（MIC）。体外建立变形链球菌生物膜模型,通过激光共聚焦显微镜（CLSM）扫描生物膜,观察不同浓度药物作用24 h后对生物膜活性的影响。其次测定处理后各组培养基上清液的终末pH值。最后通过玻璃棒粘附试验计算出不同浓度药物作用48 h后对生物膜粘附的影响。结果 椰子油对变形链球菌的生长有抑制作用,其对变形链球菌的MIC为3.13%。CLSM观察24 h后生物膜内活菌比例逐渐下降,死菌逐渐增多。培养基上清液的终末pH值随椰子油浓度的增大而升高,且均高于阴性对照组,差异具有统计学意义（P<0.05）。实验组变形链球菌的粘附率随椰子油浓度增高而降低,与阴性对照组相比差异有统计学意义(P<0.05)。结论 椰子油对变形链球菌有抑制作用,并能抑制其生物膜的活性、产酸及粘附等作用。     

Use of SSR markers to determine the anther-derived homozygous lines in coconut

Anther culture was used to obtain dihaploid (DH) coconut plants and their ploidy level was determined by flow cytometric analysis. Simple sequence repeat (SSR) marker analysis was conducted to identify the homozygous diploid individuals. Ploidy analysis showed that 50% of the tested plantlets were haploid and 50% were diploid. Polymorphic fragments of the mother palm and their segregation patterns in anther-derived plantlets were used to determine the origin of the diploid plantlets. Using a diagnostic SSR marker (CNZ43), all the diploid plantlets tested were identified as being derived from microspores (i.e. were homozygous) and were thus candidates for use in coconut breeding programs.     

Localisation of degradative enzymes in white-rot decay of lignocellulose

The use of immunogold-cytochemical labelling techniques in electron microscopy of wood infected by basidiomycete fungi has assisted in the elucidation of the localisation of enzymes which degrade lignocellulose. The use of specific immunocytochemical techniques is discussed with respect to the authenticity and accuracy of the methods, the use of adequate controls in the gold-labelling procedure, and the immunospecificity of the antibodies.Localisation of the lignin-degrading enzymes, lignin-peroxidase and laccase, has shown that these enzymes do not bind to wood cell walls unless the process of decay has already commenced. Similarly localisation of cellulases Endoglucanase II (EGII) and Cellobiohydrolase I (CBHI) has shown that these enzymes only bind to exposed ends of cellulose fibrils and to partially degraded areas of the wood cell wall. -Glucosidase is always immobilised within the extracellular polysaccharide layer surrounding fungal hyphae.This review postulates that there is regulation of the release sequence of these lignocellulolytic enzymes defining the spatial arrangement between the hyphae and the wood cell wall. This hypothesis is presented diagrammatically.     

麻疹疑似病例血清学与病原学检测结果比较

目的 分析麻疹疑似病例血清学和病原学的检测结果,比较两种检测方法,为麻疹的早期诊断提供实验室支持。方法 同时采集2017‒2018年北京市海淀区麻疹疑似病例的血清和咽拭子标本,用酶联免疫吸附试验（ELISA）方法检测血清中的麻疹IgM抗体,用荧光定量PCR（Real-time PCR）方法检测咽拭子标本中的麻疹病毒核酸。结果 血清IgM抗体检测阳性率为11.54%,Real-time PCR法检测阳性率为44.23%,其检测阳性率显著高于血清检测阳性率,差异有统计学意义（2=13.82,P0.05）。血清学检测敏感性为25.00%,病原学检测敏感性为95.83%,两种检测方法的阳性符合率为21.74%,阴性符合率为96.55%,总符合率为63.46%。ELISA和Real-time PCR法对有免疫史的病例检测阳性率分别为18.75%和37.50%,两种检测方法的阳性率差异无统计学意义（2=1.39,P>0.05）;对无免疫史或免疫史不详病例检测的阳性率分别为8.30%和47.20%,两种检测方法的阳性率差异有统计学意义（2=13.57,P<0.01）。结论 Real-time PCR方法检测的阳性率和灵敏度均高于血清学检测方法,可以在日常检测工作中作为常规方法推广,无论采用哪种检测方法,应在出疹3 d内采集样本。     

Gastroprotective and mucosa homeostatic activities of coconut milk and water on experimentally induced gastropathies in male wistar rats

In this biphasic study, 45 male wistar rats were divided into 9 groups. In Phase 1, Group 1 was treated with normal saline and served as the overall control, group 2 was treated with 95% Ethanol and represents the ulcer control, groups 3 and 4 received coconut water (CW; 4 ml/100 g BWt) and milk (CM; 4 ml/100 g BWt) for 4weeks while group 5 received Omeprazole (Omep; 20 mg/kg BWt) during terminal week. 95% Ethanol-induced ulceration followed the treatments in all except group 1. In the second phase, Group 1 was the overall control, group 2 served as ulcer control by receiving acetic acid only, group 3 received coconut milk, and group 4 received omep. CM and omep were administered post-ulcer induction for 3 and 6 days twice daily. Blood collection after 1hour was through cardiac puncture for haemocytometry, and gastric tissues harvested for histopathological investigations. Results showed significantly reduced ulcer score and gastric lesion index in Omep, CW and CM groups compared to ulcer control. WBC, neutrophil, lymphocyte counts in Omep, CW and CM groups were significantly reduced compared to ulcer and overall control groups. C-reactive protein was significantly reduced in CM compared to control. Neutrophil Infiltration score reduced while mucus cell density increased significantly in Omep; CM compared to control. EGFR and CD 31 assessment revealed significantly higher expressions in coconut-milk group compared to the ulcer control. We conclude that the protective effects of coconut (water and milk) is expressed by inflammation suppression, upregulation of mucus cell population and catalyses mucosa homeostasis via angiogenesis and mucosal cell proliferation following mucosa. erosion.     

Detection of Tobacco mosaic virus and Tomato mosaic virus in pepper and tomato by multiplex RT-PCR

Aims: To develop a highly sensitive and rapid protocol for simultaneous detection and differentiation of Tobacco mosaic virus (TMV) and Tomato mosaic virus (ToMV) in pepper and tomato. In this study, we use the multiplex PCR technique to detect dual infection of these two viruses. Methods and Results: A multiplex RT–PCR method consisting of one‐tube reaction with two primer pairs targeted to replicase genes was developed to simultaneously detect TMV and ToMV in seed samples of pepper and tomato. Specific primers were designed from conserved regions of each of the virus genomes, and their specificity was confirmed by sequencing PCR products. RT–PCR detected up to 10^?6 dilution of total RNA extracted from infected leaves. Multiplex RT–PCR revealed the presence of both TMV and ToMV in three of 18 seed samples of tomato and one of 18 seed samples of pepper. Conclusions: The multiplex PCR assay was a cost effective, quick diagnostic technique, which was helpful in differentiating TMV and ToMV accurately. Significance and Impact of the Study: The multiplex PCR assay described in this study is a valuable tool for plant pathology and basic research studies. This method may facilitate better recognition and distinction of TMV and ToMV in both pepper and tomato.     

The activity of dung beetles increases foliar nutrient concentration in tropical seedlings

Dung beetles are extensively used as a focal taxon in tropical forests. Yet, information for most of their ecological functions comes from other systems. We present results from a field experiment in a tropical rain forest showing that dung beetle activity increases foliar phosphorus concentration in seedlings of the tree Brosimum lactescens. Our results open new lines of research to assess the multiple effects that dung beetles may have on rain forest plants.