GIgantonoclea: an enigmatic Permian plant from North China

Gigantonoclea is a distinctive and enigmatic plant from the Permian of North China proper, with an unusual frond architecture and a pollen organ and vascular structure which are unique; it demonstrates a sudden rise and a rapid extinction. This paper reviews previous work on Asian gigantopterids and describes new material from the Upper Permian of Shanxi Province, including a new type of pollen organ (Jiaochengia lagrelii) and two new species of frond (Gigantonoclea crenataG. pubescens). Jiaochengia shows opposite, dissected and rather modified microsporophylls, laxly aggregating into an independent organ, which is markedly different from ‘Gigantotheca’ from Fujian. This presents evidence of heterogeneity among Asian gigantopterids and partly supports a relationship with the Carboniferous Callistophytales. Jiaochengia sporangia have what may be the first record of a waxy covering on the outer surface of a fossil plant, which is interpreted to have functioned to repel water, to protect against fungal attack and to scatter light. According to Hickey's rule, the venation of true Gigantonoclea fronds consists of three orders of main veins (rachis, midvein and secondary veins) and two orders of anastomosing veins (tertiary veins and veinlets). Certain putative ‘Gigantonoclea’ species from South China and some peripheral areas of North China do not have this type of venation and are thus excluded from the genus. Frond dimorphism is common among gigantopterids in both North and South China and can be compared with the amphibious variation from submerged to emergent leaves in extant aquatic plants. G. pubescens has a thick, bi-layered adaxial cuticle with an indumentum covering with dense papillae and trichomes bases, and deeply sunken, papillate stomata, suggesting that it favoured more arid conditions. An observed gradient from pubescent to glabrate or even glabrous gigantopterid cuticle structures between North and South China suggests a change from xeric, mesic to humid habitats.     

Substances of plant flowering

The investigation of the hormonal nature of plant flowering in connection with their photoperiodic reaction has shown that flowering depends on a bicomponental system of hormones, gibberellins regulating stem formation and growth and substances of the anthesin type regulating flower formation. In agreement with the division of the photoperiodic reaction into a leaf and a stem phase the study of the internal factors acting on plant flowering was carried out by means of leaf and stem (apex, bud and callus) models. The results obtained from work with leaf models proved the presence of two groups of hormones of flowering in plants. The data obtained from the application of stem models pointed to the localization of the action of gibberellin and anthesin in different zones of the shoot apices and characterized the potential capacity for flower formation of isolated callus tissue of neutral and photoperiodically sensitive species.     

MsERK1: a mitogen-activated protein kinase from a flowering plant.

The induction of proliferation and differentiation in cultured mammalian cells is mediated by a cascade of protein phosphorylations. A key enzyme in this signaling pathway is mitogen-activated protein (MAP) kinase (or ERK, extracellular signal-regulated kinase). We report the recovery of a full-length cDNA clone encoding a MAP kinase from alfalfa. We have named the 44-kD protein encoded by this clone MsERK1. Recombinant MsERK1 (rMsERK1), when overexpressed in Escherichia coli, is recognized by antibodies raised against MAP kinases from rat, Xenopus, and sea star and by anti-phosphotyrosine antibodies. Site-directed mutagenesis of MsERK1 demonstrated that Tyr-215 is either directly or indirectly responsible for recognition of the protein by anti-phosphotyrosine antibodies. Semipurified rMsERK1 phosphorylated itself and a model substrate, myelin basic protein, in vitro, but the Tyr-215 mutant did neither. Genomic DNA gel blot analysis suggested that the gene that encodes MsERK1 is either a member of a small multigene family or a member of a polymorphic allelic series in alfalfa. Because MAP kinase activation has been associated with mitotic stimulation in animal systems, such an enzyme may play a role in the mitogenic induction of symbiotic root nodules on alfalfa by Rhizobium signal molecules.     

Gene transfer from a parasitic flowering plant to a fern

The rattlesnake fern (Botrychium virginianum (L.) Sw.) is obligately mycotrophic and widely distributed across the northern hemisphere. Three mitochondrial gene regions place this species with other ferns in Ophioglossaceae, while two regions place it as a member of the largely parasitic angiosperm order Santalales (sandalwoods and mistletoes). These discordant phylogenetic placements suggest that part of the genome in B. virginianum was acquired by horizontal gene transfer (HGT), perhaps from root-parasitic Loranthaceae. These transgenes are restricted to B. virginianum and occur across the range of the species. Molecular and life-history traits indicate that the transfer preceded the global expansion of B. virginianum, and that the latter may have happened very rapidly. This is the first report of HGT from an angiosperm to a fern, through either direct parasitism or the mediation of interconnecting fungal symbionts.     

Macroevolutionary synthesis of flowering plant sexual systems

Sexual system is a key determinant of genetic variation and reproductive success, affecting evolution within populations and within clades. Much research in plants has focused on evolutionary transitions away from the most common state of hermaphroditism and toward the rare state of dioecy (separate sexes). Rather than transitions predominantly toward greater sexual differentiation, however, evolution may proceed in the direction of lesser sexual differentiation. We analyzed the macroevolutionary dynamics of sexual system in angiosperm genera that contain both dioecious and nondioecious species. Our phylogenetic analyses encompass a total of 2145 species from 40 genera. Overall, we found little evidence that rates of sexual system transitions are greater in any direction. Counting the number of inferred state changes revealed a mild prevalence of transitions away from hermaphroditism and away from dioecy, toward states of intermediate sexual differentiation. We identify genera in which future studies of sexual system evolution might be especially productive, and we discuss how integrating genetic or population‐level studies of sexual system could improve the power of phylogenetic comparative analyses. Our work adds to the evidence that different selective pressures and constraints act in different groups, helping maintain the variety of sexual systems observed among plants.     

Reinvestigation of Nystroemia pectiniformis Halle, an enigmatic seed plant from the Upper Permian of China

Reinvestigation of Nystroemia pectiniformis Halle from the Upper Shihhotze Formation of Shanxi Province, China, has led to the identification of new and important features of this enigmatic Late Permian seed plant, permitting its typification and diagnosis. After reassembling several of the previously studied specimens to form a single articulated branching system comprising at least four orders of branching, previously unknown features of its branching pattern and morphology have been characterized. First–order axes are wide and branch to one side only, bearing second–order branches either singly or in pairs and of two kinds: one fertile and bearing characteristic ovulate branching systems and the other presumably vegetative. Ovulate second–order axes are narrow and branch to one side only, producing numerous, closely spaced lateral branches in two alternate to sub–opposite rows. Lateral branches are slender and produce numerous ovulate branching systems to one side of the axis only. Ovulate branching systems divide unequally to produce 3–15 ultimate axes of different lengths that are planated. Each ultimate axis bears a single terminal ovule with 180 degree rotational symmetry and two horn–like integumentary projections distally. The other kind of second–order axes are distinct from those bearing ovules; they are wider and longer and branches occur on both sides of the secondary axis, lacking divisions in close proximity to the first–order axis. These have only been observed incomplete although their distinct morphology indicates they are unlikely to be ovulate branches from which ovules/seeds have been shed. Additional organs of the Nystroemia plant are considered, including pollen organs previously assigned by Halle to the same species (displaying its characteristic branching style), and also leaves of Chiropteris reniformis Halle that were probably borne on the larger kind of second–order branches. Implications of Nystroemia on seed plant evolution and distribution are discussed, and it is concluded that this most likely represents a late stratigraphic occurrence of a plesiomorphic hydrasperman–type seed plant with affinities closely allied to members of the Lyginopteridales.     

可变剪接调控植物开花的作用机制进展

开花是植物生长发育的关键转折,与种子生产和作物产量密切相关。开花转变受到复杂的基因网络调控,许多开花相关基因通过可变剪接产生多种转录本,调控开花时间。文中从多个角度系统地综述了可变剪接调控植物开花的分子机制,并对将来的研究进行了展望。     

Phylogenomics and the flowering plant tree of life

The advances accelerated by next-generation sequencing and long-read sequencing technologies continue to provide an impetus for plant phylogenetic study.In the past decade,a large number of phylogenetic studies adopting hundreds to thousands of genes across a wealth of clades have emerged and ushered plant phylogenetics and evolution into a new era.In the meantime,a roadmap for researchers when making decisions across different approaches for their phylogenomic research design is imminent.This r...     

Sensitivity of flowering plant gametophytes to temperature fluctuations

Research on plant responses to temperature stress is receiving increased interest due to the growing awareness about global warming. High and low temperature stresses help establish the narrow geographic distribution of some cultivated plants, the limited geographic extension of some other economically nutritionally important species, and also induce irregular bearing for some species. However, the understanding of plant responses to temperature stress lags behind other biotic and abiotic stresses probably due to the complex response at the molecular, cellular, and organismal level. Temperature stress affects, indeed, many developmental processes during the plant's life cycle. However, the reproductive stage, the outcome of which represents the economic value for many cultivated plants, is especially vulnerable. Here the effect of low and high temperature stresses during the flowering phase is reviewed in flowering plants in an attempt to unravel sensitive stages that are behind irregular cropping. The review presents detailed findings from 33 previously published reports spanning 19 different flowering plant species. Both the male and female organs of the flower are especially sensitive to temperature fluctuations both during their development before pollination and during the post-pollination stage. The effect of temperature stress is, however, obscured by the complex male–female interaction superimposed on the individual behavior of each organ. Interestingly, a review of the literature on this topic shows that genetic variation does exist in reproductive behavior under temperature fluctuations. This genetic diversity must be preserved and characterized in further detail to understand how plants naturally cope with changing environmental conditions, which will, undoubtedly, help us to design better strategies to face current and future challenging temperature fluctuations.     

Molecular repertoire of flowering plant male germ cells

Sperm cells—the male gametes of flowering plants—constitute the male founding lineage of angiosperms, possessing the unique capacity to fuse with the egg and central cells during double fertilization. Although it is well established that these cellular fusions are involved with initiating the development of the seedling-forming zygote and the endosperm that nourishes it, considerable information will be needed to characterize the full male molecular repertoire, which includes expressed genes of the male lineage, encoded proteins, and regulatory elements controlling male germ line identity, as well as male molecules that may mediate interactions with the female partner that initiate fertilization and development. Progress is being made using increasingly sensitive molecular methods to uncover important genes. With the pace of this discovery rapidly increasing, the likely outcome is that key molecules will be discovered within the next several years that control the founding cells of the embryo and endosperm and are involved in directing early development. Further insights into the genes and gene pathways that regulate male germ line differentiation will advance not only our fundamental understanding of these reproductive cells, but also the nature of cell–cell recognition, membrane fusion, double fertilization, zygote activation, early plant development and may aid our understanding of factors that have contributed to the overwhelming evolutionary success of flowering plants.     

EcoIS: An image serialization library for plot-based plant flowering phenology

Image series are increasingly being used to output ecological indicators because they provide the ability to reanalyze data that has already been collected and they improve temporal as well as spatial resolution. We address both the increased utilization and the need to diversify the way they are produced by introducing an open source Python (www.python.org) library called EcoIS that creates image series from unaligned pictures of specially equipped plots. We use EcoIS to sample flowering phenology plots in a high arctic environment and create image series that later generate phenophase counts and automatically estimate phenological dates of interest. Our results exhibit one day difference between EcoIS estimations of local indicators and the ones calculated with the established field-based process. We show that EcoIS' error is similar to the one of image series generated with fixed camera setups. We see that EcoIS processes an image in 3.8 s and show how it is equipped to handle data intensive scenarios. We additionally identify in-camera automatic image formatting and image acquiring oversight as contributing factors for increasing the overall error. Our main conclusion is that EcoIS creates usable image series that maintain the spatiotemporal qualities of the original images and can successfully be utilized to generate ecological indicators. EcoIS is relevant as a replacement for traditional image series infrastructure where the cost of deploying EcoIS is smaller or less intrusive to the ecosystem.     

Butanol production from renewable biomass: rediscovery of metabolic pathways and metabolic engineering

Biofuel from renewable biomass is one of the answers to help solve the problems associated with limited fossil resources and climate change. Butanol has superior liquid-fuel characteristics, with similar properties to gasoline, and thus, has the potential to be used as a substitute for gasoline. Clostridia are recognized as a good butanol producers and are employed in the industrial-scale production of solvents. Due to the difficulty of performing genetic manipulations on clostridia, however, strain improvement has been rather slow. Furthermore, complex metabolic characteristics of acidogenesis followed by solventogenesis in this strain have hampered the development of engineered clostridia strains with highly efficient and selective butanol-production capabilities. In recent years, the butanol-producing characteristics in clostridia have been further characterized and alternative pathways discovered. More recently, systems-level metabolic engineering approaches were taken to develop superior strains. Herein, we review recent discoveries of metabolic pathways for butanol production and the metabolic engineering strategies being developed.     

Pattern formation in the flowering plant embryo.

Recent mutation studies in Arabidopsis suggest rules by which the primary organization of the plant body is established in the early embryo. The main types of plant tissue arise independently of pattern formation along the axis of polarity. The axis is initially partitioned into three regions. This prepattern is later refined, possibly by position-specific cell activities, as indicated by morphological features as well as the distribution of molecular markers.     

植物开花的组蛋白甲基化调控分子机理

开花是指植物从营养生长转变到生殖生长的生理过程, 是植物个体发育和后代繁衍的中心环节, 既受遗传基础决定,同时又受到温度和光周期等多种环境因素的调控。在拟南芥中, 已经分离了大量的与开花相关的基因, 从遗传学上已初步形成了一个开花调控的网络。组蛋白甲基化是植物发育过程的重要调节方式, 近年来关于其参与开花调控的研究有了重要进展。本文综述了具有代表性的组蛋白H3赖氨酸甲基化修饰参与调控植物开花发育的机制, 提出该研究领域的发展方向和前景。     

Praziquantel: The enigmatic antiparasitic

Praziquantel (PZQ), a pyrazinoisoquinoline, was introduced as a novel anthelmintic in 1975. PZQ is currently the drug of choice for the treatment of a wide range of both veterinary and human trematode and cestode infections, including human schistosomiasis. Current estimates suggest that 150 million humans are infected with schistosomes, and it is expected that PZQ will play the lead role in chemotherapeutic control of those infections. Despite the time that has passed since its introduction and its obvious importance in global health care, it is not yet understood why PZQ is so selective and effective. The target molecules for PZQ have not been defined, nor are the sites of its effects within the parasites known. Here, Tim Day, James Bennett and Ralph Pax summarize some of the progress that has been made toward reaching these objectives in recent years.     

Changes in first flowering dates and flowering duration of 232 plant species on the island of Guernsey

Climate change has affected plant phenology; increasing temperatures are associated with advancing first flowering dates. The impact on flowering duration, however, has rarely been studied. In this study, we analysed first flowering dates and flowering durations from a 27 year dataset of weekly flower observations on 232 plant species from the island of Guernsey in the English Channel. The aim of this study was to explore variation in trends and relationships between first flowering dates, flowering duration and temperature. We specifically looked for evidence that traits, such as life forms and phylogenetic groups, explained variation in sensitivity of first flowering and flowering duration among species. Overall trends revealed significantly earlier flowering over time, by an average of 5.2 days decade^?1 since 1985. A highly significant shortening of flowering duration was observed by an average of 10 days decade^?1. Correlations between first flowering, flowering duration and year varied between different species, traits and flowering periods. Significant differences among traits were observed for first flowering and to a lesser degree for flowering duration. Overall, in comparison to first flowering, more species had significant trends in flowering duration. Temperature relationships revealed large differences in strength and direction of response. 55% of the species revealed a significant negative relationship of first flowering dates and temperature. In contrast, only 19% of flowering durations had a significant negative temperature relationship. The advance in first flowering date together with a shortening of flowering duration suggests potentially serious impacts on pollinators, which might pose a major threat to biodiversity, agriculture and horticulture. Human health, in terms of pollen allergies, however, might benefit from a shortening of specific plant pollen seasons.     

Cryphonectria radicalis: rediscovery of a lost fungus

In an attempt to isolate the ascomycete Cryphonectria parasitica (Diaporthales, Valsaceae) from dead chestnut stems, we obtained three C. radicalis strains. All three strains were isolated in areas of Switzerland with high chestnut blight incidence. To confirm our species designation, we compared the three C. radicalis strains to hypovirus (hv)-free and hv-infected C. parasitica strains. The comparison revealed several distinctive characteristics. On potato dextrose agar in the dark, the C. radicalis strains produced a fluffy mycelium and small droplets of a purple exudate giving the mycelium a light pinkish appearance. On corn meal medium in the dark, the C. radicalis strains caused a color change of the medium to purple, whereas the C. parasitica strains did not cause any color change. Ascospores from C. radicalis were significantly smaller than C. parasitica ascospores and their dimensions fit within other published size ranges. Southern hybridization analysis of the two species using nuclear and mitochondrial probes support their taxonomic separation. This separation is further supported by the lack of successful interspecific crosses. In virulence tests on chestnut trees, the C. radicalis strains exhibited very low virulence, comparable to highly hypovirulent hv-infected C. parasitica strains. Our results suggest that C. radicalis still coexists with C. parasitica although at a low frequency.     

An enigmatic heteronemertean from the Gulf of Mexico

The effects of acid (HNO3) on drift and survival of benthic invertebrate communities were assessed in stream microcosms over a 7-day exposure period. Communities were obtained from the Cache la Poudre River, Colorado, using artificial substrates colonized in the stream for 30 days and then transferred to stream microcosms. Streams receiving the highest acid concentration (pH 4.0) contained significantly fewer individuals ( F = 378.42, p < 0.0001) and taxa ( F = 7.8, p = 0.0123) at the end of the experiment compared to the other two treatments (pH 5.5, 6.5) and the control (pH 7.4). Reduced macroinvertebrate abundance resulted primarily from reduced abundance of mayflies (Ephemeroptera) which were particularly sensitive. Comparisons of Plecoptera, Trichoptera, and Diptera abundances showed no statistically significant differences among treatments. Analysis of invertebrate drift samples, collected after 2, 6, 18, and 42 h exposure, revealed that percent drift in the most acidic streams was nine times that of control streams. Ephemeroptera was the only aquatic insect order to exhibit a significant drift response, and timing and magnitude of responses varied among mayfly taxa. Differences in sensitivity to acid among aquatic insect orders observed in our experimental streams were similar to those reported from field studies in other regions. Effects of acid on drift and survival of benthic invertebrate communities were also similar to effects of heavy metals, one of the primary water quality concerns in the Rocky Mountain region. These results suggest a general pattern of responses to chemical stressors in benthic communities from Rocky Mountain streams. This revised version was published online in July 2006 with corrections to the Cover Date.