The methane cycle in ferruginous Lake Matano

In Lake Matano, Indonesia, the world’s largest known ferruginous basin, more than 50% of authigenic organic matter is degraded through methanogenesis, despite high abundances of Fe (hydr)oxides in the lake sediments. Biogenic CH₄ accumulates to high concentrations (up to 1.4 mmol L^?1) in the anoxic bottom waters, which contain a total of 7.4 × 10⁵ tons of CH₄. Profiles of dissolved inorganic carbon (ΣCO₂) and carbon isotopes (δ¹³C) show that CH₄ is oxidized in the vicinity of the persistent pycnocline and that some of this CH₄ is likely oxidized anaerobically. The dearth of NO₃^? and SO₄^2? in Lake Matano waters suggests that anaerobic methane oxidation may be coupled to the reduction of Fe (and/or Mn) (hydr)oxides. Thermodynamic considerations reveal that CH₄ oxidation coupled to Fe(III) or Mn(III/IV) reduction would yield sufficient free energy to support microbial growth at the substrate levels present in Lake Matano. Flux calculations imply that Fe and Mn must be recycled several times directly within the water column to balance the upward flux of CH₄. 16S gene cloning identified methanogens in the anoxic water column, and these methanogens belong to groups capable of both acetoclastic and hydrogenotrophic methanogenesis. We find that methane is important in C cycling, even in this very Fe‐rich environment. Such Fe‐rich environments are rare on Earth today, but they are analogous to conditions in the ferruginous oceans thought to prevail during much of the Archean Eon. By analogy, methanogens and methanotrophs could have formed an important part of the Archean Ocean ecosystem.     

磷影响陆地生态系统碳循环过程及模型表达方法

全球气候变暖已大大改变了陆地植物碳吸收能力, 提高了全球植被净初级生产力。随着气候变暖的加剧, 磷对植物生长的限制作用逐渐显现且不断增强, 磷影响陆地生态系统碳循环的机理和模型研究已成为研究热点。该文系统分析了磷影响陆地生态系统碳循环的相关机理以及模型对相关过程的定量化表达方法。综合对比分析了国际上的Carnegie- Ames-Stanford Approach-CNP (CASA-CNP)、Community Land Model-CNP (CLM-CNP)和Jena Scheme for Biosphere-Atmosphere Coupling in Hamburg-CNP (JSBACH-CNP)等碳、氮、磷耦合模型中磷影响植物光合作用与同化物分配过程、植物对磷的吸收过程、土壤中磷的转化过程以及生态系统磷输入与输出等过程的相关数学表达方法, 指出了模型算法的局限与不确定性以及未来模型发展与改进的方向。同时综合对比分析了CASA-CNP、CLM-CNP、JSBACH-CNP模型的基本特征, 总结了磷循环模型的建模方法, 为未来开展磷影响陆地生态系统碳循环的模型模拟研究提供了借鉴方法与参考思路。     

Resource-based adaptive divergence in the freshwater fish Telmatherina from Lake Matano, Indonesia

Adaptive radiations are an important source of biodiversity, but resolving which ecological pressures seed these processes in natural systems remains difficult. Here the adaptive radiation among Telmatherina, a genus of freshwater fish endemic to an ancient lake in central Sulawesi, Indonesia, was examined to determine its causal root. We demonstrate that all Telmatherina in this lake can be categorized into three lineages each possessing specialized skull shapes and pharyngeal jaw bones allowing them to exploit different resources. These data demonstrate a natural example of how resource partitioning has likely initiated adaptive radiation in a resource limited environment.     

Rates and pathways of CH4 oxidation in ferruginous Lake Matano,Indonesia

This study evaluates rates and pathways of methane (CH₄) oxidation and uptake using ¹⁴C‐based tracer experiments throughout the oxic and anoxic waters of ferruginous Lake Matano. Methane oxidation rates in Lake Matano are moderate (0.36 nmol L^?1 day^?1 to 117 μmol L^?1 day^?1) compared to other lakes, but are sufficiently high to preclude strong CH₄ fluxes to the atmosphere. In addition to aerobic CH₄ oxidation, which takes place in Lake Matano's oxic mixolimnion, we also detected CH₄ oxidation in Lake Matano's anoxic ferruginous waters. Here, CH₄ oxidation proceeds in the apparent absence of oxygen (O₂) and instead appears to be coupled to some as yet uncertain combination of nitrate (), nitrite (), iron (Fe) or manganese (Mn), or sulfate () reduction. Throughout the lake, the fraction of CH₄ carbon that is assimilated vs. oxidized to carbon dioxide (CO₂) is high (up to 93%), indicating extensive CH₄ conversion to biomass and underscoring the importance of CH₄ as a carbon and energy source in Lake Matano and potentially other ferruginous or low productivity environments.     

Genetic and morphological data supporting the hypothesis of adaptive radiation in the endemic fish of Lake Matano

Adaptive radiation resulting from differential selection acting on functional features is believed to be an important source of biodiversity. In this study, morphometric measures and mitochondrial DNA are used to test for adaptive radiation within four fish genera (Glossogobius, Oryzias, Dermogenys and Telmatherina) endemic to an ancient island lake (Lake Matano, Sulawesi, Indonesia), using the framework proposed by Schluter (The Ecology of Adaptive Radiation, Oxford University Press, 2000). We demonstrate common ancestry and rapid divergence in one genus (Telmatherina) based on 560 bp of 16S sequence data. We found higher levels of variation in feeding-related traits (N = 8) for Telmatherina relative to the other genera, while no differences were found for sexual display traits (N = 8) or neutral morphological traits (N = 8). Telmatherina also had the highest number of distinct colouration patterns among the four genera. These data, combined with the very low productivity of the lake, are indicative of selection driving adaptive radiation. The morphometric divergence in the Telmatherina likely results from selection acting on feeding traits in this low productivity lake, leading to trophic specialization among closely related morphotypes. These results provide indirect but compelling data supporting the adaptive radiation of Telmatherina in this system.     

Spectral data reveal unexpected cryptic colour polymorphism in female sailfin silverside fish from ancient Lake Matano

Persistent colour polymorphisms can result from natural and/or sexual selection, and may occur in males, females, or both sexes. Contrary to conspicuous patterns frequently observed in courtship colouration, differences in cryptic colouration are not always perceived by the human sensory system. In sexually dimorphic sailfin silversides fishes, males show conspicuous colour polymorphisms whereas females appear monomorphic and cryptic. We measured the spectral composition of body, fin and peduncle colouration in male and female Telmatherina antoniae ‘small’, a sailfin silverside species endemic to ancient Lake Matano, and found evidence for a colour polymorphism in both sexes. The three colour morphs distinguished by spectral data correspond to those commonly reported for males, and are also present in the visually (to a human eye) cryptic females. Females show hue value patterns similar to those present in males, but differ from males substantially in chroma and brightness. This is, to the best of our knowledge, the first example of a cryptic colour polymorphism in fishes; however, its significance for the mating system remains unknown. The present finding highlights the need for incorporating female spectral data into analyses of colour patterns, and suggests that colour analyses should include cryptic sexes.     

Body shape vs. colour associated initial divergence in the Telmatherina radiation in Lake Matano, Sulawesi, Indonesia

Highly polymorphic colouration patterns are often associated with sexual selection in fish and can be the initial cause of divergence among closely related taxa. Here we use genetic, body colour and geometric morphometric data collected on 118 fish from Lake Matano, Sulawesi, Indonesia to test if colouration is the initial cause of divergence in the radiating Telmatherina genus. Results reveal that all Telmatherina previously described in this system can be categorized into three mitochondrial lineages and that colouration is only weakly associated with early divergence. Clade-specific body shapes, however, likely adapted to microenvironments are key to the initial divergence in this system. Data also show that although colourations were not likely instrumental in seeding divergence in these fish, they appear to have developed in parallel within each clade. Our results are consistent with an emerging pattern repeated in many vertebrate radiations, whereby divergence by colouration or other display traits is preceded by specialization to environmental adaptive peaks.     

No barriers to gene flow among sympatric polychromatic 'small'Telmatherina antoniae from Lake Matano, Indonesia

Genetic divergence, assortative courtship and intermale aggression were assessed between sympatric colour morphs of the sailfin silverside Telmatherina antoniae , endemic to Lake Matano, Indonesia. Genetic analysis using microsatellite markers showed no barriers to gene flow among T. antoniae primary colour morphs (blue and yellow) within sampling sites, sympatric populations or at the lake-wide level. Low but significant genetic differentiation was found between yellow morphs and mixed (blue–yellow) morphs. Behavioural surveys indicated assortative courtship does occur along primary colour lines; however, intermale aggression among paired and intruding male morphs appeared equal with respect to male colour. These observations support the hypothesis that males view other males as threats to their courtship regardless of their colour. This study supports recent work suggesting that assortative mating is present in T. antoniae despite a lack of reproductive isolation among colour morphs.     

Adaptive sympatric speciation of polychromatic "roundfin" sailfin silverside fish in Lake Matano (Sulawesi)

The significance of sympatric speciation is one of the most controversial topics in evolutionary biology. Theory suggests that different factors can lead to speciation in full geographical contact, including selection and nonrandom mating. Strict criteria have been established for assessing sympatric speciation, which have been met in only a very few cases. Here, we investigate differentiation among sympatric morphospecies and color morphs of "roundfin" sailfin silversides (Telmatherinidae), small freshwater fish endemic to ancient Lake Matano in Central Sulawesi (Indonesia). Morphospecies are distinct according to body shape (geometric morphometrics), population structure (population-level amplified fragment length polymorphism [AFLP] markers), ecology, and mating behavior (habitat transects, stomach contents). Explorative genome scans based on AFLPs indicate that divergent selection affects only 1.3-4.2% of the analyzed loci, suggesting an early stage of speciation. Transect data demonstrate strong assortative mating and adaptive niche differentiation. However, we find no restrictions in gene flow among the conspicuous male color morphs. In summary, our data are consistent with a sympatric mode of divergence among three morphospecies under conditions effectively ruling out allopatric scenarios. Substantial, but incomplete, reproductive isolation suggests an early stage of speciation, most likely due to ecological selection pressure.     

Modeling the impact of liana infestation on the demography and carbon cycle of tropical forests

There is mounting empirical evidence that lianas affect the carbon cycle of tropical forests. However, no single vegetation model takes into account this growth form, although such efforts could greatly improve the predictions of carbon dynamics in tropical forests. In this study, we incorporated a novel mechanistic representation of lianas in a dynamic global vegetation model (the Ecosystem Demography Model). We developed a liana‐specific plant functional type and mechanisms representing liana–tree interactions (such as light competition, liana‐specific allometries, and attachment to host trees) and parameterized them according to a comprehensive literature meta‐analysis. We tested the model for an old‐growth forest (Paracou, French Guiana) and a secondary forest (Gigante Peninsula, Panama). The resulting model simulations captured many features of the two forests characterized by different levels of liana infestation as revealed by a systematic comparison of the model outputs with empirical data, including local census data from forest inventories, eddy flux tower data, and terrestrial laser scanner‐derived forest vertical structure. The inclusion of lianas in the simulations reduced the secondary forest net productivity by up to 0.46 t_C ha^?1 year^?1, which corresponds to a limited relative reduction of 2.6% in comparison with a reference simulation without lianas. However, this resulted in significantly reduced accumulated above‐ground biomass after 70 years of regrowth by up to 20 t_C/ha (19% of the reference simulation). Ultimately, the simulated negative impact of lianas on the total biomass was almost completely cancelled out when the forest reached an old‐growth successional stage. Our findings suggest that lianas negatively influence the forest potential carbon sink strength, especially for young, disturbed, liana‐rich sites. In light of the critical role that lianas play in the profound changes currently experienced by tropical forests, this new model provides a robust numerical tool to forecast the impact of lianas on tropical forest carbon sinks.     

Alkane-oxidizing metalloenzymes in the carbon cycle

This review examines the metalloenzymes that catalyze the oxidation of alkanes in the environment. The focus of the review is on what is known about the relative abundances of these metalloenzymes, their metal ion requirements, and their reaction mechanisms. The relative significance of these reactions in the global transformation of alkanes is discussed.     

Modeling the mammalian sleep cycle

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The role of macrophytes,especiallyZostera marina,in the carbon cycle of Lake Grevelingen (IV)

Summary Macrophytes in Lake Grevelingen comprise macroalgae (Ulva, Enteromorpha, Chaetomorpha) and eelgrass (Zostera marina). In terms of production of organic matter far out the largest share comes from eelgrass. Eelgrass showed an enormous increase after the closure of the dam in 1971: in 1968 the phanerogam covered an area of 1200 ha, and in 1978 this area was 4400 ha (Fig. 3).     

The seasonal cycle of inorganic carbon species in Cazenovia Lake,New York, 1977 *

SUMMARY. Spatial and temporal distributions of inorganic carbon and related ionic species (Ca²⁺, H⁺) were monitored weekly for 1 year in Cazenovia Lake, a small mesotrophic marl lake. Attendant [H₂CO*₃]([H₂CO₃] + [CO₂(aq)]) and CaCO₃ equilibrium conditions were determined through application of equilibrium equations adjusted for appropriate temperatures and ionic strength. A seasonal cycle was demonstrated for the inorganic carbon species which was temporally correlated to the lake's thermal and productivity cycles. Vertical homogeneity in carbonate chemistry was evident during turnover periods while dramatic differences developed between the epilimnion and hypolimnion during winter and summer stratification. The lake was supersaturated throughout the year with H₂CO*₃, though saturation was approached during the productive summer months in the epilimnion. The epilimnion was supersaturated with respect to CaCO₃, from the start of spring turnover to the end of autumn turnover. Calcium (Ca²⁺) levels within the epilimnion decreased through much of the same period. Dissolution of CaCO₃ in the hypolimnion is indicated by increases in Ca²⁺ and alkalinity as stratification periods progress. Analysis of potentially influencing factors indicates that the seasonal trends were mostly a result of CO₂ metabolism. This was further supported by concurrent algal biomass and ¹⁴C uptake.     

The plankton community of Lake Matano: factors regulating plankton composition and relative abundance in an ancient,tropical lake of Indonesia

Recent evidence reveals that food webs within the Malili Lakes, Sulawesi, Indonesia, support community assemblages that are made up primarily of endemic species. It has been suggested that many of the species radiations, as well as the paucity of cosmopolitan species in the lakes, are related to resource limitation. In order to substantiate the possibility that resource limitation is playing such an important role, a study of the phytoplankton and zooplankton communities of Lake Matano was implemented between 2000 and 2004. We determined species diversity, relative abundances, size ranges, and total biomass for the phytoplankton and zooplankton, including the distribution of ovigerous individuals throughout the epilimnion of Lake Matano in three field seasons. The phytoplankton community exhibited very low biomass (<15 μg l^?1) and species richness was depressed. The zooplankton assemblage was also limited in biomass (2.5 mg l^?1) and consisted only of three taxa including the endemic calanoid Eodiaptomus wolterecki var. matanensis, the endemic cyclopoid, Tropocyclops matanensis and the rotifer Horaella brehmi. Zooplankton were very small (<600 μm body length), and spatial habitat partitioning was observed, with Tropocylops being confined to below 80 m, while rotifer and calanoid species were consistently observed above 80 m. Less than 0.1% of the calanoid copepods in each year were egg-bearing, suggesting very low population turnover rates. It was concluded that chemical factors as opposed to physical or biological processes were regulating the observed very low standing crops of phytoplankton which in turn supports a very minimal zooplankton community restricted in both species composition and abundance. As chemical factors are a function of the catchment basin of Lake Matano, it is predicted that resource limitation has long played an important role in shaping the unique endemic assemblages currently observed in the food web of the lake.     

Seasonal primary production cycle in Lake Onega

A long-term average curve of seasonal changes in the primary production of phytoplankton in the pelagial zone of Lake Onega has been plotted on the basis of experimental data approximated by a prescribed function. Long-term average values of primary production for each day of the growing season and its integrated and daily average values for different periods of the season have been calculated. Interannual variation of the seasonal process of primary production has been analyzed, and its quantitative estimations are given. The influence of basic environmental factors on the seasonal dynamics of primary production is discussed.     

Predictability of the terrestrial carbon cycle

Terrestrial ecosystems sequester roughly 30% of anthropogenic carbon emission. However this estimate has not been directly deduced from studies of terrestrial ecosystems themselves, but inferred from atmospheric and oceanic data. This raises a question: to what extent is the terrestrial carbon cycle intrinsically predictable? In this paper, we investigated fundamental properties of the terrestrial carbon cycle, examined its intrinsic predictability, and proposed a suite of future research directions to improve empirical understanding and model predictive ability. Specifically, we isolated endogenous internal processes of the terrestrial carbon cycle from exogenous forcing variables. The internal processes share five fundamental properties (i.e., compartmentalization, carbon input through photosynthesis, partitioning among pools, donor pool‐dominant transfers, and the first‐order decay) among all types of ecosystems on the Earth. The five properties together result in an emergent constraint on predictability of various carbon cycle components in response to five classes of exogenous forcing. Future observational and experimental research should be focused on those less predictive components while modeling research needs to improve model predictive ability for those highly predictive components. We argue that an understanding of predictability should provide guidance on future observational, experimental and modeling research.