Methane turnover in exposed sediments of an Amazon floodplain lake

In the Amazon floodplain large areas of unvegetatedlake sediments are exposed to air during low water. Imeasured methane fluxes from exposed sediments of anAmazonian floodplain lake and assessed the regulatingfactors. Methane emission decreased from values between 10 and 40 mol CH₄ m^{minus 2} h^{minus 1}to zero when the sediments were exposed to air. Meanfluxes were about 3.7 mol CH₄m^{minus 2} h^{minus 1}. Fluxes were low compared tomeasurements taken from flooded habitats makingexposed lake sediments a negligible source ofatmospheric CH₄. This was mainly due to the lackof ebullition which governs methane flux in theflooded phase. Methane oxidation at the sedimentsurface consumed up to 75% of the methane enteringthe oxidised zone. Compared with CO₂ emissionmethane turnover was of minor importance for thecarbon budget of the sediments.     

Representation of tundra vegetation by pollen in lake sediments of northern Alaska

Aim To understand better the representation of arctic tundra vegetation by pollen data, we analysed pollen assemblages and pollen accumulation rates (PARs) in the surface sediments of lakes. Location Modern sediment samples were collected from seventy‐eight lakes located in the Arctic Foothills and Arctic Coastal Plain regions of northern Alaska. Methods For seventy of the lakes, we analysed pollen and spores in the upper 2 cm of the sediment and calculated the relative abundance of each taxon (pollen percentages). For eleven of the lakes, we used ²¹⁰Pb analysis to determine sediment accumulation rates, and analysed pollen in the upper 10–15 cm of the sediment to estimate modern PARs. Using a detailed land‐cover map of northern Alaska, we assigned each study site to one of five tundra types: moist dwarf‐shrub tussock‐graminoid tundra (DST), moist graminoid prostrate‐shrub tundra (PST) (coastal and inland types), low‐shrub tundra (LST) and wet graminoid tundra (WGT). Results Mapped pollen percentages and multivariate comparison of the pollen data using discriminant analysis show that pollen assemblages vary along the main north–south vegetational and climatic gradients. On the Arctic Coastal Plain where climate is cold and dry, graminoid‐dominated PST and WGT sites were characterized by high percentages of Cyperaceae and Poaceae pollen. In the Arctic Foothills where climate is warmer and wetter, shrub‐dominated DST, PST and LST were characterized by high percentages of Alnus and Betula pollen. Small‐scale variations in tundra vegetation related to edaphic variability are also represented by the pollen data. Discriminant analysis demonstrated that DST sites could be distinguished from foothills PST sites based on their higher percentages of Ericales and Rubus chamaemorus pollen, and coastal PST sites could be distinguished from WGT sites based on their higher percentages of Artemisia. PARs appear to reflect variations in overall vegetation cover, although the small number of samples limits our understanding of these patterns. For coastal sites, PARs were higher for PST than WGT, whereas in the Arctic Foothills, PARs were highest in LST, intermediate in DST, and lowest in PST. Main conclusion Modern pollen data from northern Alaska reflect patterns of tundra vegetation related to both regional‐scale climatic gradients and landscape‐scale edaphic heterogeneity.     

Methane‐derived carbon flow through microbial communities in arctic lake sediments

Aerobic methane (CH₄) oxidation mitigates CH₄ release and is a significant pathway for carbon and energy flow into aquatic food webs. Arctic lakes are responsible for an increasing proportion of global CH₄ emissions, but CH₄ assimilation into the aquatic food web in arctic lakes is poorly understood. Using stable isotope probing (SIP) based on phospholipid fatty acids (PLFA‐SIP) and DNA (DNA‐SIP), we tracked carbon flow quantitatively from CH₄ into sediment microorganisms from an arctic lake with an active CH₄ seepage. When 0.025 mmol CH₄ g^?1 wet sediment was oxidized, approximately 15.8–32.8% of the CH₄‐derived carbon had been incorporated into microorganisms. This CH₄‐derived carbon equated to up to 5.7% of total primary production estimates for Alaskan arctic lakes. Type I methanotrophs, including Methylomonas, Methylobacter and unclassified Methylococcaceae, were most active at CH₄ oxidation in this arctic lake. With increasing distance from the active CH₄ seepage, a greater diversity of bacteria incorporated CH₄‐derived carbon. Actinomycetes were the most quantitatively important microorganisms involved in secondary feeding on CH₄‐derived carbon. These results showed that CH₄ flows through methanotrophs into the broader microbial community and that type I methanotrophs, methylotrophs and actinomycetes are important organisms involved in using CH₄‐derived carbon in arctic freshwater ecosystems.     

Use of the Beaufort Sea by King Eiders Breeding on the North Slope of Alaska

Abstract: We estimated areas used by king eiders (Somateria spectabilis) in the Alaskan Beaufort Sea, how distributions of used areas varied, and characteristics that explained variation in the number of days spent at sea, to provide regulatory agencies with baseline data needed to minimize impacts of potential offshore oil development. We implanted sixty king eiders with satellite transmitters at nesting areas on the North Slope of Alaska, USA, in 2002-2004. More than 80% of marked eiders spent >2 weeks staging offshore prior to beginning a postbreeding molt migration. During postbreeding staging and migration, male king eiders had much broader distributions in the Alaskan Beaufort Sea than female eiders, which were concentrated in Harrison and Smith Bays. Distribution did not vary by sex during spring migration in the year after marking. Shorter residence times of eiders and deeper water at locations used during spring migration suggest the Alaskan Beaufort Sea might not be as critical a staging area for king eiders during prebreeding as it is postbreeding. Residence time in the Beaufort Sea varied by sex, with female king eiders spending more days at sea than males in spring and during postbreeding. We conclude the Alaskan Beaufort Sea is an important staging area for king eiders during postbreeding, and eider distribution should be considered by managers when mitigating for future offshore development. We recommend future studies examine the importance of spring staging areas outside the Alaskan Beaufort Sea.     

Microbial methane cycling in sediments of Arctic thermokarst lagoons

Thermokarst lagoons represent the transition state from a freshwater lacustrine to a marine environment, and receive little attention regarding their role for greenhouse gas production and release in Arctic permafrost landscapes. We studied the fate of methane (CH₄) in sediments of a thermokarst lagoon in comparison to two thermokarst lakes on the Bykovsky Peninsula in northeastern Siberia through the analysis of sediment CH₄ concentrations and isotopic signature, methane-cycling microbial taxa, sediment geochemistry, lipid biomarkers, and network analysis. We assessed how differences in geochemistry between thermokarst lakes and thermokarst lagoons, caused by the infiltration of sulfate-rich marine water, altered the microbial methane-cycling community. Anaerobic sulfate-reducing ANME-2a/2b methanotrophs dominated the sulfate-rich sediments of the lagoon despite its known seasonal alternation between brackish and freshwater inflow and low sulfate concentrations compared to the usual marine ANME habitat. Non-competitive methylotrophic methanogens dominated the methanogenic community of the lakes and the lagoon, independent of differences in porewater chemistry and depth. This potentially contributed to the high CH₄ concentrations observed in all sulfate-poor sediments. CH₄ concentrations in the freshwater-influenced sediments averaged 1.34 ± 0.98 μmol g⁻¹, with highly depleted δ¹³C-CH₄ values ranging from −89‰ to −70‰. In contrast, the sulfate-affected upper 300 cm of the lagoon exhibited low average CH₄ concentrations of 0.011 ± 0.005 μmol g⁻¹ with comparatively enriched δ¹³C-CH₄ values of −54‰ to −37‰ pointing to substantial methane oxidation. Our study shows that lagoon formation specifically supports methane oxidizers and methane oxidation through changes in pore water chemistry, especially sulfate, while methanogens are similar to lake conditions.     

Shifts in identity and activity of methanotrophs in arctic lake sediments in response to temperature changes

Methane (CH(4)) flux to the atmosphere is mitigated via microbial CH(4) oxidation in sediments and water. As arctic temperatures increase, understanding the effects of temperature on the activity and identity of methanotrophs in arctic lake sediments is important to predicting future CH(4) emissions. We used DNA-based stable-isotope probing (SIP), quantitative PCR (Q-PCR), and pyrosequencing analyses to identify and characterize methanotrophic communities active at a range of temperatures (4°C, 10°C, and 21°C) in sediments (to a depth of 25 cm) sampled from Lake Qalluuraq on the North Slope of Alaska. CH(4) oxidation activity was measured in microcosm incubations containing sediments at all temperatures, with the highest CH(4) oxidation potential of 37.5 μmol g(-1) day(-1) in the uppermost (depth, 0 to 1 cm) sediment at 21°C after 2 to 5 days of incubation. Q-PCR of pmoA and of the 16S rRNA genes of type I and type II methanotrophs, and pyrosequencing of 16S rRNA genes in (13)C-labeled DNA obtained by SIP demonstrated that the type I methanotrophs Methylobacter, Methylomonas, and Methylosoma dominated carbon acquisition from CH(4) in the sediments. The identity and relative abundance of active methanotrophs differed with the incubation temperature. Methylotrophs were also abundant in the microbial community that derived carbon from CH(4), especially in the deeper sediments (depth, 15 to 20 cm) at low temperatures (4°C and 10°C), and showed a good linear relationship (R = 0.82) with the relative abundances of methanotrophs in pyrosequencing reads. This study describes for the first time how methanotrophic communities in arctic lake sediments respond to temperature variations.     

Terrestrial organic matter biomarkers as tracers of Hg sources in lake sediments

Terrestrial organic matter (TOM) plays a key role in mercury (Hg) dynamics between watersheds and lakes. In this study we attempts to determine the role of TOM source and quality and not only quantity, in the fate and transport of total Hg (T-Hg) to boreal lakes. Integrating the watershed complexity is a daunting task. Within the scope of this project, we characterized this organic matter at a molecular level in order to determine Hg transfer conditions to the sediments. We sampled ten lakes in the Quebec boreal forest. In each lake, we took a sediment core at the deepest point in addition to analyzing T-Hg and a set of terrigenous biomarkers in recent sediments. Our results show no relationship between TOM quantity and T-Hg concentration in lake sediments. However, [T-Hg] variation is well explained by the increase of 3,5Bd/V ratios (R²?=?0.84; p?<?0.0002) and the decrease of C/V ratios (R²?=?0.5; p?<?0.0227). Our study shows that TOM source and quality are determinant for Hg loadings in lake sediments. More precisely, increasing TOM derived from humified soil horizons explains most of Hg level variation within sediments.     

Identification of functionally active aerobic methanotrophs in sediments from an arctic lake using stable isotope probing

Arctic lakes are a significant source of the greenhouse gas methane (CH₄), but the role that methane oxidizing bacteria (methanotrophs) play in limiting the overall CH₄ flux is poorly understood. Here, we used stable isotope probing (SIP) techniques to identify the metabolically active aerobic methanotrophs in upper sediments (0–1 cm) from an arctic lake in northern Alaska sampled during ice‐free summer conditions. The highest CH₄ oxidation potential was observed in the upper sediment (0–1 cm depth) with 1.59 µmol g wet weight^?1 day^?1 compared with the deeper sediment samples (1–3 cm, 3–5 cm and 5–10 cm), which exhibited CH₄ oxidation potentials below 0.4 µmol g wet weight^?1 day^?1. Both type I and type II methanotrophs were directly detected in the upper sediment total communities using targeted primer sets based on 16S rRNA genes. Sequencing of 16S rRNA genes and functional genes (pmoA and mxaF) in the ¹³C‐DNA from the upper sediment indicated that type I methanotrophs, mainly Methylobacter, Methylosoma, Methylomonas and Methylovulum miyakonense, dominated the assimilation of CH₄. Methylotrophs, including the genera Methylophilus and/or Methylotenera, were also abundant in the ¹³C‐DNA. Our results show that a diverse microbial consortium acquired carbon from CH₄ in the sediments of this arctic lake.     

Sea-ice use by arctic foxes in northern Alaska

The extensive use of sea-ice by three arctic foxes (Alopex lagopus) in northern Alaska was documented using satellite telemetry during the winter of 2005–2006. Here we present the first detailed data on movements of individual foxes while on the sea-ice. Two juvenile males and one juvenile female traveled long distances (904, 1,096, and 2,757 km) and remained on the sea-ice for extended periods of time (76, 120, and 156 days). Average distances traveled per day ranged from 7.5 to 17.6 km and foxes achieved maximum rates of travel of up to 61 km/day. These findings verify the use of sea-ice by arctic foxes and raise concerns that the diminishing arctic ice cover may negatively impact populations by limiting access to marine food sources.     

Nitrogen and phosphorus concentrations and export for the upper Kuparuk River on the North Slope of Alaska in 1980

Nitrogen and phosphorus concentrations were measured from May to August 1980 in the upper Kuparuk River, a tundra stream on the North Slope of Alaska. Mean values for nitrogen were 10.8 μg N 1⁻¹ for ammonium, 21.4 μg N 1⁻¹ for nitrate plus nitrite and 248 μg N 1⁻¹ for dissolved organic nitrogen. Mean values for phosphorus were 8.1 μg P 1⁻¹ for total dissolved phosphorus and 4.7 μg P 1⁻¹ for fine particulate phosphorus. Nitrate concentrations were inversely correlated with flow whereas particulate phosphorus concentrations increased during high flows. Export of nitrogen and phosphorus from the watershed during 1980 was estimated to be 4.69, 3.25 and 91 kg km⁻² yr⁻¹ for NO₃-N, NH₄-N and DON-N, respectively, and 2.86 and 3.03 kg km⁻² yr⁻¹ for TDP-P and PP-P. Both the relative concentrations of N and P and the relative amounts exported suggest that phosphorus is in short supply but both nutrients are present in low concentrations comparable to those found previously in tundra ponds at Point Barrow, Alaska.     

Water and sediment export of the upper Kuparuk River drainage of the North Slope of Alaska

Stream discharge and fine suspended sediment load were determined for the upper Kuparuk River, a clear-water tundra stream and tributary of the main Kuparuk River of the North Slope of Alaska. From 75 observations over 3 years we found a range of flows of 0.3 to 28.3 m³ sec⁻¹ and a range of sediment loads of 0.4 to 35 mg liter⁻¹. Specific water yields of 15.7, 29.7 and 33.2 cm and summer specific sediment yields of 0.5, 1.1 and 3.5 metric tons km⁻² were estimated for the period 20 May through freeze-up in 1978, 1979 and 1980, respectively. The fine suspended sediment concentrations and yields for the upper Kuparuk River were less than those in many temperate streams but similar to those reported for small rivers draining the taiga of the Mackenzie Valley lowlands in subarctic Canada.     

River and lake sediments as sources of infective Frankia (Alnus)

Exudation of carboxylic anions and protons by plant roots plays an important role in mobilizing soil P under P-deficiency conditions. The objective of this work was to quantify short-term (6 h) carboxylate and H⁺ exudation by tomato roots in response to P concentration (0, 0.1, 0.5 and 1.0 mt M P) in nutrient solution (C_p). The exudation rate of tri- and dicarboxylates decreased exponentially with increasing C_p, from 0.3 to 0.03 mol plant^–1 6h^–1. At low C_p the predominant exudates were fumarate, citrate and succinate, while at C_p=0.5 and 1.0 mt M the prevalent anions were succinate and citrate. The solution pH declined sharply as C_p was lowered from 0.1 (pH=4.2) to 0 mt M P (pH=3.7).     

Diversity of active aerobic methanotrophs along depth profiles of arctic and subarctic lake water column and sediments

Methane (CH₄) emitted from high-latitude lakes accounts for 2–6% of the global atmospheric CH₄ budget. Methanotrophs in lake sediments and water columns mitigate the amount of CH₄ that enters the atmosphere, yet their identity and activity in arctic and subarctic lakes are poorly understood. We used stable isotope probing (SIP), quantitative PCR (Q-PCR), pyrosequencing and enrichment cultures to determine the identity and diversity of active aerobic methanotrophs in the water columns and sediments (0–25 cm) from an arctic tundra lake (Lake Qalluuraq) on the north slope of Alaska and a subarctic taiga lake (Lake Killarney) in Alaska''s interior. The water column CH₄ oxidation potential for these shallow (∼2 m deep) lakes was greatest in hypoxic bottom water from the subarctic lake. The type II methanotroph, Methylocystis, was prevalent in enrichment cultures of planktonic methanotrophs from the water columns. In the sediments, type I methanotrophs (Methylobacter, Methylosoma and Methylomonas) at the sediment-water interface (0–1 cm) were most active in assimilating CH₄, whereas the type I methanotroph Methylobacter and/or type II methanotroph Methylocystis contributed substantially to carbon acquisition in the deeper (15–20 cm) sediments. In addition to methanotrophs, an unexpectedly high abundance of methylotrophs also actively utilized CH₄-derived carbon. This study provides new insight into the identity and activity of methanotrophs in the sediments and water from high-latitude lakes.     

Annually laminated lake sediments and environmental changes in Bashang Plateau, North China

Angulinuo Lake is the biggest lake on the Bashang Plateau, North China, and is 47.6 km² in area and 2-6 m in depth. A core from the inner part of Angulinuo Lake was sliced and the sediment was observed by Scanning Electronic Microscope (SEM). Annual laminations characterized by variable color and grain size were found and interpreted as recording the cyclic deposition of lacustrine clay and aeolian dust. The results of chemical analysis of coarse grains conducted by SEM-EDAX, and grain size analysis of modern aeolian dust in the ice on Angulinuo Lake, support an aeolian origin for the light coarse layers. Image analysis technique was used to calculate the size and number of coarse grains in each layer. The coarse grains were fractionated into four classes: > 42 μm, 14-42 μm, 14-4.2 μm and 1.4-4.2 μm. In general, the abundance of the four classes shows similar temporal variation patterns. Around Angulinuo Lake, the winter monsoon is strong and transports aeolian dust into the lake. When the winter monsoon is strong, the size and amount of coarse grains are expected to increase. We infer that the winter monsoon was weaker during 8430-5440 year BP, and was unstable in the later part of this period. From 5440 year BP, the winter monsoon became stronger, and then weaker from 3250 to 2490 year BP. During 2490-1170 year BP, the winter monsoon was slightly stronger, but since 1170 year BP, it has become weaker again. The changes of the winter monsoon intensity recorded in the annual laminations in Angulinuo Lake sediments correspond well to environmental changes in North China and to changes in sea level during the same period. Periods of weaker winter monsoon correspond to times of higher sea levels while the periods of stronger winter monsoon correspond to the Neoglaciation stage in China and the periods of lower sea levels.     

Littoral chironomid communities in an arctic Alaskan lake

The soft-sediment littoral zone of arctic Toolik Lake (68°N) is composed of patches of macrophytes and bare sediments, which support distinct communities of chironomid larvae. Macrophytes were typically dominated by Stictochironomus rosenschoeldi (Zett.) but also had persistent populations of Heterotrissocladius maeaeri Brund., Paratanytarsus spp., Ablabesmyia sp., as well as several other less common taxa. Bare sediments were dominated by H. maeaeri, Parakiefferiella sp., and Zalutschia zalutschicola Lip. S. rosenschoeldi was common in bare sediments hut far less so than in macrophytes. Few taxa were restricted to either habitat. Life cycle lengths, estimated for some species, ranged from 1 to 4 yr. Analysis of indicator species suggested that Toolik is oligotrophic to ultra-oligotrophic, which is consistent with the available primary production estimate for Toolik Lake. Littoral chironomid communities, in addition to profundal communities, may be useful in lake typology.     

Diatoms of modern bottom sediments in Siberian arctic

The investigation of the species composition and ecology of diatoms of modern bottom sediments in water bodies of arctic polygonal tundra in three subregions of North Yakutiya has been carried out. As a result, 161 taxons of diatoms were determined; the determinant role of the depth, conductivity, pH of the water, and geographic latitude in their distribution was confirmed, and two complexes of species with respect to the leading abiotic factors were distinguished. The diatoms of the first complex prefer shallow water bodies of high latitudes with neutral and slightly alkaline water and relatively high conductivity. The second complex is confined to the water bodies of lower latitudes with small conductivity, as well as neutral and slightly acidic water.     

Palynological investigations in sediments of ancient lake Duvensee,Schleswig-Holstein (North Germany)

The Duvensee originated before the Alleroed in the Late Glacial, and had its largest areal coverage during the Preboreal. After the lake retreat, which began in early Boreal times, the marginal shore areas and nearshore islands were repeatedly inhabited by man in the early Mesolithicum. Archaeological excavations of human settlements and pollen analyses of sediment cores show evidence of lake level fluctuations in the ensuing period. The results disclose that shallow water sediments such as lake marls, algal muds and coarse detrital gyttjas predominate in the sequence. In keeping with the shallow water conditions, strong lateral facies changes were observed in the cores. The early Holocene deposits have almost the same thickness irrespective of their position in the shallow or deep parts of the lake basin. The subaerial exposure of the nearshore and island areas sometimes resulted in fern and reed peats. The last remnants of the lake, which was drained in 1850, lay in the marginal areas over shallow water sediments.     

Patterns and drivers of anaerobic nitrogen transformations in sediments of thermokarst lakes

Significant attention has been given to the way in which the soil nitrogen (N) cycle responds to permafrost thaw in recent years, yet little is known about anaerobic N transformations in thermokarst lakes, which account for more than one-third of thermokarst landforms across permafrost regions. Based on the N isotope dilution and tracing technique, combined with qPCR and high-throughput sequencing, we presented large-scale measurements of anaerobic N transformations of sediments across 30 thermokarst lakes over the Tibetan alpine permafrost region. Our results showed that gross N mineralization, ammonium immobilization, and dissimilatory nitrate reduction rates in thermokarst lakes were higher in the eastern part of our study area than in the west. Denitrification dominated in the dissimilatory nitrate reduction processes, being two and one orders of magnitude higher than anaerobic ammonium oxidation (anammox) and dissimilatory nitrate reduction to ammonium (DNRA), respectively. The abundances of the dissimilatory nitrate reduction genes (nirK, nirS, hzsB, and nrfA) exhibited patterns consistent with sediment N transformation rates, while α diversity did not. The inter-lake variability in gross N mineralization and ammonium immobilization was dominantly driven by microbial biomass, while the variability in anammox and DNRA was driven by substrate supply and organic carbon content, respectively. Denitrification was jointly affected by nirS abundance and organic carbon content. Overall, the patterns and drivers of anaerobic N transformation rates detected in this study provide a new perspective on potential N release, retention, and removal upon the formation and development of thermokarst lakes.