表观遗传学及其研究方法

表观遗传学是一门重要的生命学科,主要包括DNA的甲基化、组蛋白修饰以及非编码RNA等内容,其中任何一方面的表观遗传学变化对生物体的生命过程都有重要的影响。近年来随着生命科学的快速发展,表观遗传学越来越受到人们的关注,各种先进科技的应用也使得表观遗传学实验技术得到快速的发展。本文对DNA甲基化、组蛋白修饰及非编码RNA的基本内容及实验方法进行了综述,并对不同的研究方法进行分析,有利于表观遗传学的深入研究。     

植物组蛋白赖氨酸甲基化建立过程及其遗传性研究进展

表观遗传学主要包括DNA甲基化、组蛋白修饰和非编码RNA,组蛋白甲基化作为组蛋白修饰中的一种重要修饰,在植物体的发育和环境适应中发挥着重要作用。组蛋白甲基化主要发生在赖氨酸残基上,同时根据不同的赖氨酸位点和每个赖氨酸位点甲基化程度的不同,形成了不同的赖氨酸甲基化修饰。根据对基因的不同功能,通常将组蛋白赖氨酸甲基化修饰分为2大类:(1)能够促进基因表达的,如H3K4me3和H3K36me3;(2)能够抑制基因表达的,如H3K9me2和H3K27me3。不同的组蛋白赖氨酸甲基化去甲基化过程需要相应的阅读(reader)、书写(writer)和擦除(eraser)3种蛋白。同时,组蛋白赖氨酸甲基化的遗传性质目前还不是很清楚。综述了植物中组蛋白赖氨酸甲基化建立与去除过程,以及对组蛋白赖氨酸甲基化可遗传性的探讨。     

高致病性A(H5N8)亚型禽流感病毒NA基因核酸检测方法的建立

建立以Real-time PCR为基础的新型高致病性A(H5N8)亚型禽流感病毒NA基因检测方法。针对2016年6月起频繁暴发的H5N8禽流感疫情,从GenBank和Global Initiative on Sharing All Influenza Data(GISAID)下载2014年以来的H5N8亚型禽流感病毒的NA序列,通过序列比对,在相对保守区域设计适用于实时荧光逆转录聚合酶链式反应(rRT-PCR)的引物和探针。选用28株不同NA亚型的流感病毒进行特异性验证,结果显示本文设计的引物探针组合能够特异性检测高致病性H5N8亚型禽流感病毒的NA基因。灵敏度检测结果显示,本文设计的引物探针组合能检出最低23个拷贝的RNA。本文建立了高致病性H5N8亚型禽流感病毒NA基因特异性荧光定量检测方法,与世界卫生组织(WHO)推荐的A型流感病毒M基因、H5基因检测引物探针的最低检测限一致,可以组合用于H5N8亚型禽流感病毒的检测。     

表观遗传学: 生物细胞非编码RNA调控的研究进展

表观遗传学是研究基因表达发生了可遗传的改变, 而DNA序列不发生改变的一门生物学分支, 对细胞的生长分化及肿瘤的发生发展至关重要。表观遗传学的主要机制包括DNA甲基化、组蛋白修饰及新近发现的非编码RNA。非编码RNA 是指不能翻译为蛋白的功能性RNA分子, 其中常见的具调控作用的非编码RNA包括小干涉RNA、miRNA、piRNA 以及长链非编码RNA。近年来大量研究表明非编码RNA在表观遗传学的调控中扮演了越来越重要的角色。文章综述了近年来生物细胞非编码RNA调控的表观遗传学研究进展, 以有助于理解哺乳动物细胞中非编码RNA及其调控机制和功能。     

植物DNA甲基化及其研究策略

DNA甲基化是表观遗传学研究的热点问题之一,植物DNA甲基化的研究对植物研究领域的发展有着举足轻重的作用。本文阐述了植物DNA甲基化的相关机制,其中包括RdDM（RNA—dependent DNA methylation）、DNA甲基化与组蛋白修饰以及DNA去甲基化等近几年研究的热点问题：讨论了DNA甲基化在植物发育中的功能（包括基因组防御和调控基因表达）、DNA甲基化与转基因沉默的关系以及其在表观遗传学中的地位。最后就目前国内外研究植物DNA甲基化所采取的常用策略,即高效液相色谱法、亚硫酸盐测序法、甲基化敏感的限制性内切酶结合Southern杂交分析法和MSAP（methylation—sensitive amplified polymorphism）法进行了详尽的介绍和讨论。     

关注学科前沿，促进学术交流——站在新起点的2009年Science China: Life Sciences

《中国科学》杂志英文版生命科学辑Science China: Life Sciences在2009年进行了全面的改革,贯彻“关注学科前沿,促进学术交流”的编辑出版方针,刊发了5个前沿学科专题,包括基因组学研究,非编码RNA与RNA组学,高致病性禽流感病毒,表观遗传学,干细胞——从分子病理到临床应用,发表了近200篇学术论文,使刊物从形式到内容都展现了一个新的水平．以此为标志,刊物正站在一个前进的新起点,以全新的态势开始其发展的新里程．就此对已发表的一些重要学术论文作一简要回顾和评述．     

DNA甲基化和去甲基化的研究现状及思考

DNA甲基化通过调节基因转录、印记、X染色体灭活和防御外源性遗传物质入侵等, 在细胞分化、胚胎发育、环境适应和疾病发生发展上发挥重要作用, 是当前表观遗传学研究的热点领域之一。文章介绍了在过去几年中TET介导的DNA羟甲基化及其在早期胚胎发育中的作用, DNA主动去甲基化及其与被动去甲基化的关系, DNA甲基化建立及其与组蛋白修饰、染色质构象、多梳蛋白和非编码RNA结合等关系方面的重要研究进展和存在的问题以及DNA甲基化的转化应用前景。     

表观遗传学及其与疾病相关性

表观遗传学(Epigenetics)是指基因的DNA序列不发生改变的情况下,基因的表达水平与功能发生改变,并产生可遗传表型的遗传现象。主要内容包括DNA甲基化,组蛋白共价修饰,染色质重塑,非编码RNA 4个调控机制。这些表观遗传学变化与多种疾病的发生发展有关,该文就表观遗传学及其与疾病相关性作一综述。     

H7N9禽流感病毒与其他流感病毒对雪貂致病性与传播力的比较

目的针对2013年3月中国爆发的人感染H7N9禽流感病毒,在雪貂体内进行致病性及传播力的研究,并与甲型H1N1流感病毒、H5N1禽流感病毒进行比较。方法对新发H7N9毒株、甲型H1N1流感病毒、H5N1禽流感病毒感染雪貂后的临床症状、体征,呼吸道排毒情况,组织病理学变化等进行评价和比较,并对H7N9毒株在雪貂群体中的传播力进行研究。结果雪貂模型的临床症状、死亡率、病毒传播以及组织病理学分析显示:H7N9病毒的致病性低于H5N1,与2009年起源于北美的甲型H1N1流感病毒相当。新发H7N9禽流感病毒可以在雪貂的呼吸道、心脏、肝脏以及嗅球进行复制。值得注意的是H7N9禽流感可以通过飞沫在雪貂间进行低水平的传播,并且在传播过程中,病毒基因组内有多个位点的氨基酸发生了替换。结论 H7N9禽流感病毒对雪貂的致病性较H5N1禽流感病毒低,与甲型H1N1流感病毒对雪貂的致病性相当,H7N9禽流感病毒可在雪貂间进行传播。     

RNA甲基化修饰调控和规律

表观遗传学修饰包括DNA、RNA和蛋白质的化学修饰,基于非序列改变所致基因表达和功能水平变化。近年来,在DNA和蛋白质修饰基础上,可逆RNA甲基化修饰研究引领了第3次表观遗传学修饰研究的浪潮。RNA存在100余种化学修饰,甲基化是最主要的修饰形式。鉴定RNA甲基化修饰酶及研发其转录组水平高通量检测技术,是揭示RNA化学修饰调控基因表达和功能规律的基础。本文主要总结了近年来本课题组与合作团队及国内外同行在RNA甲基化表观转录组学研究中取得的主要前沿进展,包括发现了RNA去甲基酶、甲基转移酶和结合蛋白,揭示RNA甲基化修饰调控RNA加工代谢,及其调控正常生理和异常病理等重要生命进程。这些系列研究成果证明RNA甲基化修饰类似于DNA甲基化,具有可逆性,拓展了RNA甲基化表观转录组学研究新领域,完善了中心法则表观遗传学规律。     

Current research status of immunology in the genomic era

This review updates the current status of immunology research under the influence of genomics, both conceptually and technologically. It particularly highlights the advantages of employing the high-throughput and large-scale technology, the large genomic database, and bioinformatic power in the immunology research. The fast development in the fields of basic immunology, clinical immunology (tumor and infectious immunology) and vaccine designing is illustrated with respect to the successful usage of genomic strategy. We also speculate the future research directions of immunology in the era of genomics and post-genomics. Supported by the National High-Tech Research and Development Program of China (Grant No.2006AA02A252), National Natural Science Foundation of China (Grant No.30771965) and Shanghai Pujiang Program (Grant No.07pj14066).     

R~3中的一类拟齐次向量场的性质

利用三维拟齐次向量场和三维齐次向量场之间的等价关系并借鉴对齐次向量场的研究方法,把齐次向量场的一些结论推广到拟齐次向量场.并运用这些理论分析了具有不同增长率的三种群竞争模型的动力学性质和生物意义,得到增长率最大的种群在此竞争系统中占优,增长率最小的种群在此竞争系统中灭绝的结论.     

A multi-site experiment to test biocontrol effects of wildflower strips in different French climate zones

Sowing of wildflower strips has been integrated in agri-environment schemes of several European countries. Their beneficial effects on natural enemies of pest insects are well documented but (1) the desired spill-over into crop fields has not always been demonstrated, and (2) the need to adapt sown mixtures to regional climatic differences has been rarely addressed.We set up a multi-site experiment in different French climatic regions to compare effects of a wildflower strip with a grass mixture and spontaneous vegetation. The design included five regions, three to five fields per region and the three strip treatments being repeated in each field. We tested strip treatment effects on vegetation (plant species richness, plant and flower cover) and on natural enemies (hoverflies, ladybirds, aphid predation). In a subset, we further analysed the spill-over into winter wheat fields including natural enemies and pest insects (cereal aphids, leaf beetles).The wildflower strip mixture developed well in all regions and increased plant species richness and flower cover compared with grass strips and spontaneous vegetation. We found a corresponding higher hoverfly abundance and aphid predation in wildflower strips that were consistent in all regions, whereas ladybird abundance was not affected. A significantly higher hoverfly abundance, aphid predation and aphid parasitism in wheat fields close to wildflower strips indicated a spill-over. No corresponding margin treatment effects were observed for aphid and leaf beetle abundance in the field. A multivariate analysis comparing the influence of climate and vegetation parameters showed that floral cover better explained variation in natural enemy abundance and predation than climate. Our results demonstrated that similar mixtures of native plants can be used over large climatic gradients to improve biocontrol. Further research is needed to improve spill-over into crop fields and to obtain consistently strong effects in different climate zones.     

Benthic diatom assemblages in mountain streams: community structure in relation to environmental and human pressures

The objective of this study was to determine the environmental factors that best explain the distribution and community composition of benthic diatoms in undisturbed mountain streams in the Eastern Highlands of Zimbabwe. Benthic diatoms were sampled during the dry season from 21 sampling sites established along altitudinal gradient of the study rivers. A total of 119 diatom species belonging to 38 genera and twelve families were recorded for all the 21 sites sampled. No significant differences were observed in species diversity and equitability amongst the three river systems. However, species richness, diversity and equitability decreased significantly along the longitudinal gradient of the rivers, with the highest richness, diversity and evenness being recorded in the upper reaches. Temperature, velocity, NO₃^? and Ca²⁺ levels were strongly associated with changes in diatom communities in the three rivers. Inventory of diatom communities has applications in many fields of biological research including conservation and biological monitoring of ecosystem changes.     

如何检索国外植物生物学相关网站

植物生长与发育、植物细胞信号和基因调控、植物基因组研究等三个领域是当前植物生物学研究的热点。我们介绍了与这三个领域有关的国外主要网站,以期对植物生物学研究者有所帮助。     

The status of cognitive neuroscience.

Cognitive neuroscience rests on findings, methods, and theory from three fields: experimental psychology, systems-level neuroscience, and computer science. The strong trend over the past few years has been for a greater integration across these fields. The influence of this interdisciplinary approach on current research on memory, perception, and language will be illustrated.     

Electric field effects on human spinal injury: Is there a basis in the in vitro studies?

An important basis for the clinical application of small DC electric current to mammalian spinal injury is the responses of neurons in culture to applied electric fields. Our recent finding that zebrafish neurons were unresponsive to applied fields prompted us to critically examine previous results. We conclude that compelling evidence for neuronal guidance and directional stimulation of growth toward either the cathode or anode in an electric field exists only for cultured Xenopus neurons, and not for any mammalian neurons. No basis for the reported success in treating spinal injury exists in the in vitro studies, and considerable research will be required if the conditions of field application in mammalian spinal injury are to be optimized.     

朝向人类起源与演化研究的共业:古人类学、考古学与遗传学的交叉与整合

对于方兴未艾的现代人类起源与演化问题的研究,目前主要在遗传学、古人类学和旧石器时代考古学三个领域内进行。学者们提出了"多地区进化说"、"连续进化附带杂交说"、"出自非洲说"、"融合说"等观点与假说,有的学说针锋相对,南辕北辙。究其原因,除了相关研究还处于盲人摸象的阶段,只是在局部问题与材料上做分析和解释,尚无法得出全面、能被普遍接受的结论外,由于不同学科存在研究对象、方法和思路的不同,学科间缺少了解、沟通与协作,出现一些学术语言和研究结论不被彼此理解和接受的情况,存在一定的误解与无谓的争论,影响了相互之间的借鉴、互动和成果的共享,进而妨碍了跨学科的整合研究并达成学术共识。其实,每个学科都有自己的特点和不可替代的优势,每个学科也有难以克服的弱点,在解决人类起源与演化这样重大的学术问题上,任何一个学科都不可能包打天下,独享其成。因而,开展相关领域的交流合作,尤其是传统的古人类学、考古学与新兴的分子生物学之间的交叉与协作,明确彼此的关注点、需求和专长,凝练共同的学术问题和目标,整合现有的研究问题、资源与成果并向着共同的学术方向一道前行,是推动相关研究走向深入并破译现代人起源这一重大命题的必要举措。     

Perspectives of DNA microarray and next-generation DNA sequencing technologies

DNA microarray and next-generation DNA sequencing technologies are important tools for high-throughput genome research, in revealing both the structural and functional characteristics of genomes. In the past decade the DNA microarray technologies have been widely applied in the studies of functional genomics, systems biology and pharmacogenomics. The next-generation DNA sequencing method was first introduced by the 454 Company in 2003, immediately followed by the establishment of the Solexa and Solid techniques by other biotech companies. Though it has not been long since the first emergence of this technology, with the fast and impressive improvement, the application of this technology has extended to almost all fields of genomics research, as a rival challenging the existing DNA microarray technology. This paper briefly reviews the working principles of these two technologies as well as their application and perspectives in genome research. Supported by the National High-Tech Research Program of China (Grant No.2006AA020704) and Shanghai Science and Technology Commission (Grant No. 05DZ22201)     

Putative neurotransmitters in three experimental filariasis models

Some putative neurotransmitters in three experimental filariasis models were investigated by a new relevant chromatographic method, sensitive and specific. No catecholaminergic compounds have been detected, but serotonin was found in Dipetalonema vitae. However, further investigations revealed very high levels of gamma amino butyric acid (GABA) in the macro-filariae. These data allow us to foresee new fields in filariasis therapeutics.